Wall clock time and date at job start Tue Mar 31 2020 11:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38632 * 120.46907 * 2 1 4 4 C 1.38583 * 118.49060 * 179.97438 * 3 2 1 5 5 C 1.38608 * 119.34634 * 359.97438 * 4 3 2 6 6 N 1.31489 * 120.90246 * 0.02562 * 5 4 3 7 7 C 1.32750 * 121.64424 * 359.68857 * 6 5 4 8 8 C 1.48167 * 119.71950 * 180.30831 * 7 6 5 9 9 O 1.21515 * 119.99208 * 186.06305 * 8 7 6 10 10 N 1.34777 * 120.00607 * 6.06453 * 8 7 6 11 11 C 1.46492 * 120.00137 * 180.02562 * 10 8 7 12 12 C 1.53949 * 113.58126 * 252.72247 * 11 10 8 13 13 C 1.52911 * 86.78399 * 220.66555 * 12 11 10 14 14 C 1.52904 * 121.13654 * 150.61628 * 13 12 11 15 15 C 1.53950 * 86.78472 * 100.82289 * 14 13 12 16 16 N 1.46492 * 113.58307 * 139.33441 * 15 14 13 17 17 C 1.36944 * 119.99948 * 107.27758 * 16 15 14 18 18 H 1.07994 * 120.00091 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99803 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99617 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00163 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47133 * 89.99876 * 21 19 17 23 23 H 1.48506 * 109.47112 * 210.00182 * 21 19 17 24 24 H 1.48500 * 109.47120 * 329.99826 * 21 19 17 25 25 C 1.52910 * 121.13533 * 259.17742 * 13 12 11 26 26 C 1.52909 * 88.04158 * 24.89729 * 13 12 11 27 27 H 1.09000 * 109.47284 * 96.73564 * 1 2 3 28 28 H 1.09000 * 109.46720 * 336.73592 * 1 2 3 29 29 H 1.09001 * 109.46657 * 216.73526 * 1 2 3 30 30 H 1.07997 * 120.75448 * 359.95438 * 3 2 1 31 31 H 1.07994 * 120.32861 * 180.02562 * 4 3 2 32 32 H 1.08003 * 119.54302 * 180.02562 * 5 4 3 33 33 H 0.96998 * 119.99718 * 359.97438 * 10 8 7 34 34 H 1.09003 * 112.82579 * 23.91406 * 11 10 8 35 35 H 1.09005 * 113.66085 * 335.13456 * 12 11 10 36 36 H 1.08996 * 113.66718 * 106.19219 * 12 11 10 37 37 H 1.09003 * 113.65755 * 215.28861 * 14 13 12 38 38 H 1.08997 * 113.66880 * 346.34542 * 14 13 12 39 39 H 1.09002 * 113.57331 * 270.12691 * 15 14 13 40 40 H 0.97002 * 120.00362 * 287.27674 * 16 15 14 41 41 H 0.97004 * 119.99710 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.66093 * 13.65088 * 25 13 12 43 43 H 1.08999 * 113.66472 * 144.60876 * 25 13 12 44 44 H 1.09003 * 113.66253 * 220.63663 * 26 13 12 45 45 H 1.08997 * 113.66535 * 89.57292 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 0.0005 5 6 4.2322 -0.0839 0.0016 6 7 3.5407 -1.2023 0.0016 7 6 2.2132 -1.2003 0.0067 8 6 1.4768 -2.4860 0.0134 9 8 0.2663 -2.4932 -0.0930 10 7 2.1493 -3.6473 0.1376 11 6 1.4212 -4.9184 0.1436 12 6 1.3579 -5.5854 1.5297 13 6 1.6002 -6.9112 0.8075 14 6 2.3224 -8.0679 1.4993 15 6 0.9307 -8.6830 1.7330 16 7 0.8886 -10.1328 1.5275 17 6 0.7808 -10.9740 2.6028 18 1 0.7264 -10.5685 3.6022 19 6 0.7405 -12.3478 2.4080 20 7 0.6364 -13.1561 3.4415 21 14 0.8339 -13.0492 0.6792 22 1 2.2542 -13.2898 0.3188 23 1 0.0850 -14.3304 0.6237 24 1 0.2365 -12.0848 -0.2791 25 6 0.4490 -7.8741 0.5149 26 6 2.2715 -6.1175 -0.3138 27 1 -0.3634 -0.1205 -1.0206 28 1 -0.3633 0.9441 0.4059 29 1 -0.3633 -0.8236 0.6147 30 1 1.6901 2.1415 -0.0007 31 1 4.1722 2.0598 0.0010 32 1 5.3115 -0.1249 0.0025 33 1 3.1156 -3.6415 0.2222 34 1 0.4541 -4.8542 -0.3552 35 1 2.1720 -5.2935 2.1932 36 1 0.3786 -5.5179 2.0035 37 1 2.9525 -8.6533 0.8295 38 1 2.8327 -7.7784 2.4179 39 1 0.4697 -8.3744 2.6713 40 1 0.9371 -10.4971 0.6298 41 1 0.6085 -14.1162 3.3054 42 1 -0.5375 -7.4296 0.6472 43 1 0.5516 -8.4038 -0.4322 44 1 2.0219 -6.4750 -1.3129 45 1 3.3424 -5.9751 -0.1686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963657278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:10 Heat of formation + Delta-G solvation = 36.371671 kcal Electronic energy + Delta-G solvation = -25153.245622 eV Core-core repulsion = 21557.507325 eV Total energy + Delta-G solvation = -3595.738296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.95816 -41.31871 -39.74927 -37.38618 -35.45087 -34.55394 -33.69822 -32.87057 -31.87509 -28.46699 -26.79601 -26.68722 -26.19543 -25.53024 -23.78769 -22.94720 -21.85566 -21.53447 -19.87329 -19.10949 -18.58295 -17.85243 -17.02608 -16.90686 -16.51951 -16.43540 -16.19542 -15.83138 -15.73722 -15.23635 -14.79605 -14.67797 -14.53191 -14.04617 -13.73564 -13.71855 -13.64615 -13.61534 -13.44344 -13.17128 -13.00649 -12.91978 -12.89469 -12.39238 -12.21307 -12.01636 -11.85753 -11.45368 -11.08335 -11.05837 -10.84860 -10.81952 -10.77112 -10.40293 -10.18146 -9.83532 -9.26116 -8.02217 -5.34929 -0.34714 0.23962 1.37851 1.41573 1.48900 1.70105 2.09030 2.48817 2.83743 3.16370 3.27571 3.44377 3.48220 3.65541 3.74438 3.80655 3.86241 3.87851 3.97450 4.05441 4.08474 4.28881 4.41862 4.53050 4.57948 4.58624 4.76970 4.77982 4.78632 4.80323 4.92909 4.96817 5.03249 5.06115 5.09349 5.11227 5.18429 5.25286 5.36218 5.47101 5.60243 5.62285 5.69155 5.78784 6.23382 6.42345 6.81198 7.08357 7.15041 7.86007 8.05605 9.19463 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.036634 B = 0.002140 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.125757 B =13081.994202 C =13298.583684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.088 4.088 4 C -0.131 4.131 5 C 0.081 3.919 6 N -0.474 5.474 7 C 0.041 3.959 8 C 0.563 3.437 9 O -0.559 6.559 10 N -0.691 5.691 11 C 0.127 3.873 12 C -0.122 4.122 13 C -0.090 4.090 14 C -0.140 4.140 15 C 0.149 3.851 16 N -0.743 5.743 17 C -0.233 4.233 18 H 0.055 0.945 19 C -0.069 4.069 20 N -0.985 5.985 21 Si 0.958 3.042 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.251 1.251 25 C -0.121 4.121 26 C -0.115 4.115 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.179 0.821 32 H 0.191 0.809 33 H 0.417 0.583 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.367 0.633 41 H 0.257 0.743 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.943 34.835 -11.560 37.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.114 4.114 4 C -0.151 4.151 5 C -0.080 4.080 6 N -0.185 5.185 7 C -0.095 4.095 8 C 0.349 3.651 9 O -0.438 6.438 10 N -0.341 5.341 11 C 0.022 3.978 12 C -0.161 4.161 13 C -0.091 4.091 14 C -0.180 4.180 15 C 0.040 3.960 16 N -0.384 5.384 17 C -0.364 4.364 18 H 0.073 0.927 19 C -0.260 4.260 20 N -0.636 5.636 21 Si 0.785 3.215 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.176 1.176 25 C -0.159 4.159 26 C -0.153 4.153 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.187 0.813 31 H 0.196 0.804 32 H 0.208 0.792 33 H 0.254 0.746 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.200 0.800 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.454 33.895 -11.415 36.534 hybrid contribution -0.087 -0.432 -0.357 0.567 sum 7.368 33.463 -11.772 36.230 Atomic orbital electron populations 1.20987 0.89208 1.03648 1.03260 1.21153 0.98615 0.93073 0.96233 1.21965 0.94884 0.98204 0.96316 1.22835 0.95091 1.00855 0.96280 1.23407 1.01855 0.87212 0.95500 1.67482 1.06607 1.33715 1.10736 1.20888 0.90603 0.93296 1.04725 1.18299 0.86504 0.84131 0.76124 1.90724 1.14397 1.87204 1.51450 1.45839 1.11642 1.04759 1.71865 1.22504 0.96978 0.80980 0.97312 1.23170 1.02581 0.93556 0.96743 1.21883 0.97402 0.92193 0.97659 1.23427 0.98216 0.96476 0.99882 1.21885 0.95729 0.81248 0.97102 1.42756 1.88795 1.02379 1.04460 1.19112 1.40636 0.88428 0.88190 0.92736 1.25562 1.02766 0.96327 1.01323 1.69899 1.59576 1.02959 1.31162 0.85362 0.77987 0.77672 0.80477 1.20337 1.22354 1.17568 1.23114 0.97666 0.96349 0.98817 1.23134 1.00149 0.93273 0.98767 0.91001 0.89782 0.90717 0.81265 0.80388 0.79212 0.74594 0.87867 0.88839 0.91565 0.90448 0.92265 0.91565 0.79977 0.93399 0.91109 0.89530 0.89933 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 8.75 71.24 0.62 -1.31 16 2 C -0.09 -1.48 5.93 -19.52 -0.12 -1.60 16 3 C -0.09 -0.85 9.83 22.45 0.22 -0.63 16 4 C -0.13 -0.89 10.12 22.44 0.23 -0.66 16 5 C 0.08 0.84 11.18 84.83 0.95 1.79 16 6 N -0.47 -8.26 9.56 -184.91 -1.77 -10.03 16 7 C 0.04 0.85 6.75 41.89 0.28 1.13 16 8 C 0.56 13.74 7.75 86.88 0.67 14.41 16 9 O -0.56 -16.37 12.91 -3.76 -0.05 -16.42 16 10 N -0.69 -14.54 5.34 -442.09 -2.36 -16.90 16 11 C 0.13 2.80 4.24 45.63 0.19 2.99 16 12 C -0.12 -2.88 7.64 30.89 0.24 -2.64 16 13 C -0.09 -2.29 1.11 -52.31 -0.06 -2.35 16 14 C -0.14 -4.42 7.64 30.88 0.24 -4.18 16 15 C 0.15 5.70 4.48 45.63 0.20 5.91 16 16 N -0.74 -35.19 5.20 -319.94 -1.67 -36.85 16 17 C -0.23 -13.54 10.45 84.03 0.88 -12.66 16 18 H 0.05 3.49 8.06 -2.91 -0.02 3.46 16 19 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.99 -64.29 13.97 21.65 0.30 -63.99 16 21 Si 0.96 46.15 27.74 68.60 1.90 48.06 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 24 H -0.25 -10.89 6.52 99.48 0.65 -10.25 16 25 C -0.12 -3.61 7.59 30.88 0.23 -3.37 16 26 C -0.12 -2.33 7.59 30.89 0.23 -2.09 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 0.94 8.05 -2.39 -0.02 0.92 16 29 H 0.07 1.68 5.83 -2.39 -0.01 1.67 16 30 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 31 H 0.18 -0.16 8.06 -2.91 -0.02 -0.19 16 32 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.42 7.50 8.07 -92.71 -0.75 6.75 16 34 H 0.10 2.59 7.46 -2.39 -0.02 2.57 16 35 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.71 8.10 -2.39 -0.02 2.69 16 40 H 0.37 16.54 5.78 -92.71 -0.54 16.00 16 41 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.09 2.49 8.12 -2.39 -0.02 2.47 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.10 1.78 8.12 -2.39 -0.02 1.76 16 Total: -1.00 -75.44 369.07 1.52 -73.92 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.33 Total: 31.15 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 5.49 Total: -8.92 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -5.49 Total: -127.78 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.05 Total: -16.42 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.90 Total: 48.06 kcal Total: -75.44 1.52 -73.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963657278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.292 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds