Wall clock time and date at job start Tue Mar 31 2020 11:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31693 * 119.71870 * 2 1 4 4 C 1.31931 * 121.87689 * 180.29392 * 3 2 1 5 5 C 1.38344 * 121.08309 * 359.67919 * 4 3 2 6 6 C 1.38360 * 119.30313 * 0.02714 * 5 4 3 7 7 C 1.39526 * 119.71505 * 179.71437 * 2 1 3 8 8 C 1.47845 * 120.55678 * 0.02562 * 7 2 1 9 9 O 1.21547 * 120.00124 * 353.49277 * 8 7 2 10 10 N 1.34773 * 119.99461 * 173.49194 * 8 7 2 11 11 C 1.46501 * 119.99935 * 180.02562 * 10 8 7 12 12 C 1.53947 * 113.58413 * 154.99655 * 11 10 8 13 13 C 1.52912 * 86.78022 * 89.87125 * 12 11 10 14 14 C 1.52917 * 121.13331 * 259.18259 * 13 12 11 15 15 C 1.53952 * 86.77898 * 209.37958 * 14 13 12 16 16 N 1.46501 * 113.57770 * 139.33860 * 15 14 13 17 17 C 1.36934 * 120.00289 * 107.27732 * 16 15 14 18 18 H 1.07997 * 119.99955 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00311 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00127 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47194 * 60.00040 * 21 19 17 23 23 H 1.48505 * 109.47092 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47001 * 299.99894 * 21 19 17 25 25 C 1.52906 * 121.13949 * 150.62171 * 13 12 11 26 26 C 1.52903 * 88.04314 * 24.89928 * 13 12 11 27 27 H 1.08995 * 109.46734 * 263.71517 * 1 2 3 28 28 H 1.09002 * 109.46955 * 23.71259 * 1 2 3 29 29 H 1.09001 * 109.47283 * 143.71605 * 1 2 3 30 30 H 1.08002 * 119.45576 * 179.70349 * 4 3 2 31 31 H 1.07992 * 120.35104 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.85709 * 180.02562 * 6 5 4 33 33 H 0.97002 * 120.00268 * 359.97438 * 10 8 7 34 34 H 1.09007 * 112.87869 * 23.85162 * 11 10 8 35 35 H 1.08998 * 113.66359 * 335.40236 * 12 11 10 36 36 H 1.09003 * 113.66414 * 204.33944 * 12 11 10 37 37 H 1.08996 * 113.66078 * 323.84915 * 14 13 12 38 38 H 1.08992 * 113.66122 * 94.90859 * 14 13 12 39 39 H 1.08997 * 113.58016 * 270.12584 * 15 14 13 40 40 H 0.97007 * 119.99973 * 287.27491 * 16 15 14 41 41 H 0.97001 * 119.99918 * 179.97438 * 20 19 17 42 42 H 1.09000 * 113.66568 * 265.09083 * 25 13 12 43 43 H 1.09002 * 113.66360 * 36.04887 * 25 13 12 44 44 H 1.09002 * 113.66410 * 89.57799 * 26 13 12 45 45 H 1.09007 * 113.66320 * 220.62606 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4783 1.1934 -0.0057 5 6 4.2366 0.0363 -0.0054 6 6 3.5987 -1.1914 0.0004 7 6 2.1987 -1.2118 0.0060 8 6 1.4655 -2.4956 0.0119 9 8 0.2559 -2.5042 0.1307 10 7 2.1385 -3.6564 -0.1146 11 6 1.4121 -4.9286 -0.1094 12 6 2.1518 -6.0633 -0.8412 13 6 2.8051 -6.3876 0.5028 14 6 4.2309 -5.9343 0.8187 15 6 4.3325 -7.1759 1.7232 16 7 5.6248 -7.8604 1.6358 17 6 6.5172 -7.7733 2.6708 18 1 6.2682 -7.2002 3.5517 19 6 7.7415 -8.4223 2.5882 20 7 8.0444 -9.1220 1.5152 21 14 8.9585 -8.3040 4.0004 22 1 8.3418 -8.8568 5.2330 23 1 10.1805 -9.0792 3.6670 24 1 9.3210 -6.8813 4.2235 25 6 3.2377 -7.8129 0.8482 26 6 1.6000 -5.7397 1.1855 27 1 -0.3632 -0.1125 1.0215 28 1 -0.3633 0.9409 -0.4133 29 1 -0.3634 -0.8284 -0.6082 30 1 3.9736 2.1531 -0.0104 31 1 5.3152 0.0908 -0.0098 32 1 4.1661 -2.1104 0.0012 33 1 3.1038 -3.6495 -0.2099 34 1 0.3697 -4.8227 -0.4101 35 1 2.8552 -5.7116 -1.5959 36 1 1.4926 -6.8499 -1.2083 37 1 4.8999 -5.9636 -0.0413 38 1 4.2796 -4.9913 1.3631 39 1 4.0183 -6.9936 2.7509 40 1 5.8483 -8.3755 0.8448 41 1 8.9000 -9.5752 1.4573 42 1 2.4931 -8.3707 1.4162 43 1 3.6261 -8.3708 -0.0038 44 1 0.7857 -6.4354 1.3881 45 1 1.8625 -5.1296 2.0498 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964751626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:08 Heat of formation + Delta-G solvation = 36.656294 kcal Electronic energy + Delta-G solvation = -25720.126240 eV Core-core repulsion = 22124.400286 eV Total energy + Delta-G solvation = -3595.725954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06947 -41.30927 -39.73857 -37.24280 -35.30544 -34.35555 -33.63333 -32.91051 -31.40169 -28.75213 -26.75415 -26.58215 -26.27320 -25.63266 -23.93548 -23.00881 -22.02176 -21.17431 -19.43201 -18.86920 -18.69946 -17.75523 -17.12047 -16.95459 -16.78497 -16.28779 -16.13821 -15.78876 -15.70970 -15.20700 -15.00299 -14.68265 -14.35181 -14.15704 -13.94087 -13.63714 -13.45933 -13.35410 -13.28494 -12.99690 -12.95033 -12.90555 -12.79746 -12.39402 -12.22391 -12.10695 -11.81916 -11.20022 -11.04735 -11.02239 -10.97611 -10.83273 -10.67589 -10.45156 -10.19404 -9.87755 -8.96148 -7.94052 -5.21747 -0.39403 0.16018 1.47523 1.49698 1.55919 1.77420 2.02523 2.56883 2.76314 3.28871 3.37497 3.51028 3.56465 3.59245 3.66235 3.71249 3.83705 3.89044 3.99062 4.04331 4.30705 4.35591 4.43901 4.58352 4.61784 4.65051 4.67582 4.74974 4.86217 4.89487 4.91179 4.98897 5.00078 5.03285 5.09208 5.10416 5.12927 5.20791 5.26852 5.44412 5.54543 5.62230 5.64875 5.74878 6.28628 6.43355 6.87127 7.10372 7.34503 8.12931 8.35455 9.29025 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.002985 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.403797 B = 9377.746526 C =10833.408453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.169 3.831 3 N -0.514 5.514 4 C 0.124 3.876 5 C -0.180 4.180 6 C -0.041 4.041 7 C -0.208 4.208 8 C 0.564 3.436 9 O -0.556 6.556 10 N -0.696 5.696 11 C 0.126 3.874 12 C -0.120 4.120 13 C -0.093 4.093 14 C -0.132 4.132 15 C 0.146 3.854 16 N -0.728 5.728 17 C -0.243 4.243 18 H 0.074 0.926 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.970 3.030 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.277 1.277 25 C -0.130 4.130 26 C -0.122 4.122 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.192 0.808 31 H 0.174 0.826 32 H 0.156 0.844 33 H 0.408 0.592 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 17.329 -6.237 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.031 3.969 3 N -0.224 5.224 4 C -0.033 4.033 5 C -0.199 4.199 6 C -0.067 4.067 7 C -0.213 4.213 8 C 0.352 3.648 9 O -0.437 6.437 10 N -0.347 5.347 11 C 0.020 3.980 12 C -0.158 4.158 13 C -0.093 4.093 14 C -0.173 4.173 15 C 0.037 3.963 16 N -0.365 5.365 17 C -0.375 4.375 18 H 0.092 0.908 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.799 3.201 22 H -0.206 1.206 23 H -0.223 1.223 24 H -0.203 1.203 25 C -0.169 4.169 26 C -0.161 4.161 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.209 0.791 31 H 0.191 0.809 32 H 0.173 0.827 33 H 0.245 0.755 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.962 18.106 -5.967 23.630 hybrid contribution 2.060 -1.252 0.503 2.463 sum -11.902 16.853 -5.464 21.344 Atomic orbital electron populations 1.20951 0.87660 1.03684 1.03751 1.21670 0.97973 0.87084 0.90158 1.67696 1.11434 1.28548 1.14700 1.23625 0.88738 1.00644 0.90308 1.22490 1.03567 0.92116 1.01767 1.22112 0.92411 1.00614 0.91533 1.20769 0.95349 0.94299 1.10929 1.18181 0.86793 0.83919 0.75869 1.90707 1.14625 1.87454 1.50893 1.45577 1.11261 1.04815 1.73024 1.21853 0.96886 0.82003 0.97212 1.23149 0.99410 0.97330 0.95874 1.22210 0.93843 0.95914 0.97352 1.23361 0.94338 0.99248 1.00306 1.21890 0.85059 0.92911 0.96490 1.42591 1.14857 1.59625 1.19468 1.19640 0.96071 1.24668 0.97127 0.90841 1.25524 1.00168 1.00860 1.00174 1.69803 1.23652 1.38643 1.29945 0.85271 0.78291 0.77553 0.79019 1.20636 1.22268 1.20299 1.23157 0.98033 0.96132 0.99598 1.23173 0.97361 0.98580 0.96960 0.90363 0.90556 0.89052 0.79091 0.80880 0.82655 0.75481 0.88070 0.90469 0.87052 0.90952 0.92077 0.91649 0.79435 0.94052 0.91344 0.90857 0.87624 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.23 8.87 71.24 0.63 -1.59 16 2 C 0.17 3.83 6.82 42.89 0.29 4.13 16 3 N -0.51 -10.88 10.26 -182.84 -1.88 -12.75 16 4 C 0.12 1.83 11.17 84.70 0.95 2.78 16 5 C -0.18 -2.34 10.10 22.32 0.23 -2.11 16 6 C -0.04 -0.66 9.63 22.73 0.22 -0.44 16 7 C -0.21 -4.43 5.89 -19.99 -0.12 -4.55 16 8 C 0.56 13.26 7.70 86.79 0.67 13.92 16 9 O -0.56 -15.75 12.98 -3.86 -0.05 -15.80 16 10 N -0.70 -13.93 5.21 -442.39 -2.30 -16.24 16 11 C 0.13 2.52 4.31 45.63 0.20 2.71 16 12 C -0.12 -2.27 7.59 30.88 0.23 -2.04 16 13 C -0.09 -2.21 1.02 -52.31 -0.05 -2.27 16 14 C -0.13 -3.92 6.98 30.89 0.22 -3.70 16 15 C 0.15 5.45 4.48 45.63 0.20 5.65 16 16 N -0.73 -35.66 5.40 -319.93 -1.73 -37.39 16 17 C -0.24 -13.24 9.97 84.03 0.84 -12.40 16 18 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 20 N -0.97 -58.45 13.06 21.65 0.28 -58.17 16 21 Si 0.97 45.34 29.55 68.60 2.03 47.37 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C -0.13 -3.90 7.59 30.88 0.23 -3.66 16 26 C -0.12 -2.63 7.64 30.88 0.24 -2.39 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 2.15 5.86 -2.39 -0.01 2.14 16 30 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.16 1.92 6.57 -2.91 -0.02 1.90 16 33 H 0.41 7.07 6.16 -92.71 -0.57 6.50 16 34 H 0.10 2.12 7.47 -2.38 -0.02 2.10 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 39 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 40 H 0.37 19.69 7.92 -92.70 -0.73 18.95 16 41 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 2.30 8.12 -2.39 -0.02 2.29 16 44 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -68.87 368.73 1.50 -67.37 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -0.29 Total: 35.34 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.44 Total: -9.75 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -5.63 Total: -124.54 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.05 Total: -15.80 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -68.87 1.50 -67.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964751626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.030 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds