Wall clock time and date at job start Tue Mar 31 2020 11:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38356 * 120.34643 * 2 1 4 4 N 1.31924 * 121.08040 * 179.97438 * 3 2 1 5 5 C 1.31703 * 121.87845 * 359.77221 * 4 3 2 6 6 C 1.39524 * 120.56303 * 0.48827 * 5 4 3 7 7 C 1.47840 * 120.55649 * 179.77652 * 6 5 4 8 8 O 1.21554 * 120.00013 * 354.02341 * 7 6 5 9 9 N 1.34778 * 120.00013 * 174.02344 * 7 6 5 10 10 C 1.47670 * 134.45177 * 174.49291 * 9 7 6 11 11 C 1.53449 * 85.97144 * 155.71229 * 10 9 7 12 12 C 1.47668 * 134.45208 * 354.49482 * 9 7 6 13 13 C 1.52626 * 113.71440 * 268.85498 * 11 10 9 14 14 C 1.53183 * 109.35197 * 171.27182 * 13 11 10 15 15 C 1.52667 * 109.43065 * 58.92851 * 14 13 11 16 16 N 1.46899 * 109.34468 * 303.77193 * 15 14 13 17 17 C 1.36937 * 120.68858 * 235.31099 * 16 15 14 18 18 H 1.08003 * 120.00201 * 145.49836 * 17 16 15 19 19 C 1.38812 * 120.00080 * 325.50164 * 17 16 15 20 20 N 1.31621 * 119.99784 * 334.64002 * 19 17 16 21 21 Si 1.86794 * 120.00378 * 154.64205 * 19 17 16 22 22 H 1.48502 * 109.47197 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47194 * 119.99868 * 21 19 17 24 24 H 1.48497 * 109.47593 * 239.99928 * 21 19 17 25 25 C 1.47122 * 118.62155 * 55.03549 * 16 15 14 26 26 C 1.38349 * 120.34871 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47257 * 269.97818 * 1 2 3 28 28 H 1.09006 * 109.47164 * 29.98357 * 1 2 3 29 29 H 1.09001 * 109.46634 * 149.97746 * 1 2 3 30 30 H 1.08002 * 119.45846 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.71764 * 180.24332 * 5 4 3 32 32 H 1.08998 * 113.79403 * 41.45419 * 10 9 7 33 33 H 1.09000 * 113.79558 * 269.97618 * 10 9 7 34 34 H 1.09000 * 113.79098 * 90.02441 * 12 9 7 35 35 H 1.08995 * 113.79826 * 318.55180 * 12 9 7 36 36 H 1.09002 * 109.48750 * 291.23235 * 13 11 10 37 37 H 1.08998 * 109.49456 * 51.30579 * 13 11 10 38 38 H 1.09003 * 109.49022 * 179.02156 * 14 13 11 39 39 H 1.08998 * 109.49336 * 299.09106 * 14 13 11 40 40 H 1.08996 * 109.44638 * 183.78133 * 15 14 13 41 41 H 1.09006 * 109.37025 * 63.70391 * 15 14 13 42 42 H 0.96999 * 120.00183 * 354.13464 * 20 19 17 43 43 H 1.08992 * 109.63461 * 68.58255 * 25 16 15 44 44 H 1.08997 * 109.63404 * 188.98999 * 25 16 15 45 45 H 1.08002 * 120.85938 * 359.95606 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2109 0.0005 5 6 4.2350 0.1015 0.0055 6 6 3.6054 -1.1436 0.0002 7 6 4.4024 -2.3888 0.0008 8 8 5.6123 -2.3361 -0.1037 9 7 3.7874 -3.5824 0.1172 10 6 4.2366 -4.9877 0.0541 11 6 3.0015 -5.3076 0.9067 12 6 2.3945 -4.0089 0.3590 13 6 3.2674 -5.2740 2.4092 14 6 1.9386 -5.3889 3.1626 15 6 1.2450 -6.6920 2.7732 16 7 1.0730 -6.7348 1.3149 17 6 -0.1658 -6.9224 0.7625 18 1 -0.4221 -6.4357 -0.1669 19 6 -1.0925 -7.7382 1.3972 20 7 -0.6837 -8.6965 2.2016 21 14 -2.9194 -7.4762 1.1097 22 1 -3.1151 -6.3435 0.1693 23 1 -3.5110 -8.7085 0.5293 24 1 -3.5848 -7.1685 2.4011 25 6 2.2585 -6.5658 0.4602 26 6 2.2061 -1.1939 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5136 29 1 -0.3632 -0.8898 -0.5142 30 1 1.6629 2.1275 0.0004 31 1 5.3136 0.1561 0.0097 32 1 5.1823 -5.1704 0.5643 33 1 4.2023 -5.4158 -0.9477 34 1 1.8121 -4.1457 -0.5521 35 1 1.8767 -3.4140 1.1113 36 1 3.9139 -6.1080 2.6828 37 1 3.7542 -4.3348 2.6716 38 1 2.1274 -5.3827 4.2361 39 1 1.2981 -4.5467 2.9008 40 1 0.2696 -6.7425 3.2569 41 1 1.8559 -7.5363 3.0930 42 1 0.2635 -8.8883 2.2854 43 1 2.9111 -7.4326 0.5634 44 1 1.9486 -6.4623 -0.5796 45 1 1.6859 -2.1404 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981688881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:55 Heat of formation + Delta-G solvation = 54.013652 kcal Electronic energy + Delta-G solvation = -26863.766633 eV Core-core repulsion = 23268.793350 eV Total energy + Delta-G solvation = -3594.973283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13339 -40.10616 -38.20147 -36.11644 -33.92808 -33.00747 -32.41275 -30.70337 -29.84712 -27.55670 -26.47818 -26.27991 -25.23174 -24.16481 -22.57148 -22.39666 -20.83483 -19.42877 -18.29270 -17.37193 -17.24305 -17.04697 -16.64340 -15.85489 -15.57003 -14.64419 -14.59272 -14.24178 -14.04633 -13.86108 -13.71300 -13.62043 -13.42702 -13.06970 -12.98429 -12.90124 -12.74161 -12.47521 -12.12070 -12.03279 -11.86342 -11.46967 -11.18330 -10.78697 -10.52697 -10.35503 -10.20343 -10.16553 -10.10118 -10.01482 -9.85674 -9.51059 -9.34868 -9.19665 -8.66616 -8.41350 -6.93202 -6.14775 -3.39818 0.46905 0.96455 2.70749 2.79607 3.44054 3.45944 3.58957 3.65749 4.06257 4.32424 4.40126 4.46519 4.54467 4.65476 4.70528 4.84264 4.93688 5.10608 5.20946 5.31953 5.35193 5.36705 5.40799 5.46153 5.50096 5.54337 5.64624 5.67705 5.70943 5.78328 5.84927 5.86108 5.94928 6.06941 6.20861 6.33782 6.38697 6.38830 6.50477 6.59012 6.62898 6.96020 7.09297 7.60682 7.69735 7.96573 8.06641 8.50483 9.02127 9.73699 10.21867 11.11058 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.004116 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.571858 B = 6800.365011 C = 8123.174664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.143 4.143 3 C 0.116 3.884 4 N -0.486 5.486 5 C 0.148 3.852 6 C -0.175 4.175 7 C 0.582 3.418 8 O -0.543 6.543 9 N -0.634 5.634 10 C 0.116 3.884 11 C -0.100 4.100 12 C 0.112 3.888 13 C -0.084 4.084 14 C -0.136 4.136 15 C 0.153 3.847 16 N -0.593 5.593 17 C -0.356 4.356 18 H 0.052 0.948 19 C -0.016 4.016 20 N -0.908 5.908 21 Si 1.066 2.934 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.290 1.290 25 C 0.162 3.838 26 C -0.055 4.055 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.017 0.983 42 H 0.270 0.730 43 H 0.023 0.977 44 H 0.060 0.940 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 14.092 -2.905 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.145 4.145 3 C -0.041 4.041 4 N -0.194 5.194 5 C -0.010 4.010 6 C -0.180 4.180 7 C 0.372 3.628 8 O -0.423 6.423 9 N -0.368 5.368 10 C -0.006 4.006 11 C -0.103 4.103 12 C -0.009 4.009 13 C -0.121 4.121 14 C -0.175 4.175 15 C 0.027 3.973 16 N -0.317 5.317 17 C -0.485 4.485 18 H 0.070 0.930 19 C -0.220 4.220 20 N -0.546 5.546 21 Si 0.896 3.104 22 H -0.217 1.217 23 H -0.221 1.221 24 H -0.216 1.216 25 C 0.035 3.965 26 C -0.081 4.081 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.176 0.824 31 H 0.184 0.816 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.078 0.922 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.764 14.595 -2.545 15.286 hybrid contribution 1.070 -0.270 -0.536 1.227 sum 4.833 14.325 -3.081 15.430 Atomic orbital electron populations 1.20768 0.89459 1.03570 1.03151 1.20965 0.98127 0.93735 1.01680 1.22930 0.90050 0.97687 0.93457 1.67800 1.08000 1.30806 1.12768 1.22968 1.00842 0.86002 0.91203 1.20993 0.94412 0.95359 1.07206 1.17694 0.86710 0.82018 0.76423 1.90761 1.13603 1.86652 1.51241 1.50021 1.11769 1.04859 1.70196 1.23283 0.99111 0.77963 1.00243 1.22599 0.94512 0.97019 0.96141 1.23432 0.83532 0.93780 1.00189 1.21118 0.97966 1.00867 0.92196 1.21995 0.96084 1.01272 0.98155 1.20786 0.98988 0.92314 0.85202 1.44051 1.03009 1.84639 0.99986 1.19873 0.90462 1.27273 1.10929 0.92987 1.25909 1.05243 0.92305 0.98523 1.70710 1.18528 1.25580 1.39830 0.83530 0.75531 0.75433 0.75928 1.21746 1.22052 1.21630 1.20814 0.89040 0.91764 0.94871 1.22337 0.93121 0.99770 0.92839 0.90438 0.90952 0.90761 0.82381 0.81555 0.90059 0.89442 0.89092 0.89764 0.91876 0.93047 0.92822 0.92458 0.90954 0.96494 0.91888 0.95881 0.92178 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.03 36.01 0.36 -0.49 16 2 C -0.14 -1.46 5.89 -104.54 -0.62 -2.07 16 3 C 0.12 1.20 10.85 -17.47 -0.19 1.01 16 4 N -0.49 -6.12 10.35 -12.91 -0.13 -6.25 16 5 C 0.15 1.95 10.77 -17.13 -0.18 1.76 16 6 C -0.17 -2.37 5.89 -104.82 -0.62 -2.99 16 7 C 0.58 9.03 8.00 -12.33 -0.10 8.93 16 8 O -0.54 -9.90 17.12 5.32 0.09 -9.81 16 9 N -0.63 -9.07 3.44 -181.59 -0.62 -9.69 16 10 C 0.12 1.58 7.98 -3.18 -0.03 1.56 16 11 C -0.10 -1.50 0.87 -154.43 -0.13 -1.63 16 12 C 0.11 1.55 5.22 -3.17 -0.02 1.54 16 13 C -0.08 -1.27 5.02 -26.83 -0.13 -1.41 16 14 C -0.14 -2.29 5.99 -26.81 -0.16 -2.45 16 15 C 0.15 3.23 4.76 -4.00 -0.02 3.21 16 16 N -0.59 -13.17 2.76 -172.75 -0.48 -13.65 16 17 C -0.36 -9.01 9.42 -15.06 -0.14 -9.15 16 18 H 0.05 1.32 7.95 -52.48 -0.42 0.91 16 19 C -0.02 -0.42 4.63 -17.43 -0.08 -0.50 16 20 N -0.91 -25.72 12.67 55.49 0.70 -25.02 16 21 Si 1.07 23.69 29.99 -169.99 -5.10 18.59 16 22 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.16 2.95 5.70 -3.81 -0.02 2.93 16 26 C -0.05 -0.65 8.89 -38.87 -0.35 -1.00 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.17 2.09 7.67 -52.49 -0.40 1.69 16 32 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 33 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 34 H 0.09 1.22 7.92 -51.93 -0.41 0.81 16 35 H 0.08 1.15 6.07 -51.93 -0.32 0.83 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.76 8.02 -51.93 -0.42 0.34 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.97 7.37 -51.93 -0.38 0.59 16 40 H 0.07 1.74 6.72 -51.93 -0.35 1.39 16 41 H 0.02 0.37 7.98 -51.93 -0.41 -0.04 16 42 H 0.27 7.74 7.14 -40.82 -0.29 7.45 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.08 7.79 -51.93 -0.40 0.68 16 45 H 0.15 1.72 4.17 -52.49 -0.22 1.50 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -30.46 359.33 -9.16 -39.62 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.61 Total: 1.55 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.42 Total: -0.76 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.53 Total: -54.61 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.10 Total: 18.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.46 -9.16 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981688881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.634 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds