Wall clock time and date at job start Tue Mar 31 2020 11:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38356 * 120.34643 * 2 1 4 4 N 1.31924 * 121.08040 * 179.97438 * 3 2 1 5 5 C 1.31703 * 121.87845 * 359.77221 * 4 3 2 6 6 C 1.39524 * 120.56303 * 0.48827 * 5 4 3 7 7 C 1.47840 * 120.55649 * 179.77652 * 6 5 4 8 8 O 1.21554 * 120.00013 * 354.02341 * 7 6 5 9 9 N 1.34778 * 120.00013 * 174.02344 * 7 6 5 10 10 C 1.47670 * 134.45177 * 174.49291 * 9 7 6 11 11 C 1.53449 * 85.97144 * 155.71229 * 10 9 7 12 12 C 1.47668 * 134.45208 * 354.49482 * 9 7 6 13 13 C 1.52626 * 113.71440 * 268.85498 * 11 10 9 14 14 C 1.53183 * 109.35197 * 171.27182 * 13 11 10 15 15 C 1.52667 * 109.43065 * 58.92851 * 14 13 11 16 16 N 1.46899 * 109.34468 * 303.77193 * 15 14 13 17 17 C 1.36937 * 120.68858 * 235.31099 * 16 15 14 18 18 H 1.08003 * 120.00201 * 145.49836 * 17 16 15 19 19 C 1.38812 * 120.00080 * 325.50164 * 17 16 15 20 20 N 1.31621 * 119.99784 * 334.64002 * 19 17 16 21 21 Si 1.86794 * 120.00378 * 154.64205 * 19 17 16 22 22 H 1.48502 * 109.47197 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47194 * 119.99868 * 21 19 17 24 24 H 1.48497 * 109.47593 * 239.99928 * 21 19 17 25 25 C 1.47122 * 118.62155 * 55.03549 * 16 15 14 26 26 C 1.38349 * 120.34871 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47257 * 269.97818 * 1 2 3 28 28 H 1.09006 * 109.47164 * 29.98357 * 1 2 3 29 29 H 1.09001 * 109.46634 * 149.97746 * 1 2 3 30 30 H 1.08002 * 119.45846 * 0.02562 * 3 2 1 31 31 H 1.07995 * 119.71764 * 180.24332 * 5 4 3 32 32 H 1.08998 * 113.79403 * 41.45419 * 10 9 7 33 33 H 1.09000 * 113.79558 * 269.97618 * 10 9 7 34 34 H 1.09000 * 113.79098 * 90.02441 * 12 9 7 35 35 H 1.08995 * 113.79826 * 318.55180 * 12 9 7 36 36 H 1.09002 * 109.48750 * 291.23235 * 13 11 10 37 37 H 1.08998 * 109.49456 * 51.30579 * 13 11 10 38 38 H 1.09003 * 109.49022 * 179.02156 * 14 13 11 39 39 H 1.08998 * 109.49336 * 299.09106 * 14 13 11 40 40 H 1.08996 * 109.44638 * 183.78133 * 15 14 13 41 41 H 1.09006 * 109.37025 * 63.70391 * 15 14 13 42 42 H 0.96999 * 120.00183 * 354.13464 * 20 19 17 43 43 H 1.08992 * 109.63461 * 68.58255 * 25 16 15 44 44 H 1.08997 * 109.63404 * 188.98999 * 25 16 15 45 45 H 1.08002 * 120.85938 * 359.95606 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2109 0.0005 5 6 4.2350 0.1015 0.0055 6 6 3.6054 -1.1436 0.0002 7 6 4.4024 -2.3888 0.0008 8 8 5.6123 -2.3361 -0.1037 9 7 3.7874 -3.5824 0.1172 10 6 4.2366 -4.9877 0.0541 11 6 3.0015 -5.3076 0.9067 12 6 2.3945 -4.0089 0.3590 13 6 3.2674 -5.2740 2.4092 14 6 1.9386 -5.3889 3.1626 15 6 1.2450 -6.6920 2.7732 16 7 1.0730 -6.7348 1.3149 17 6 -0.1658 -6.9224 0.7625 18 1 -0.4221 -6.4357 -0.1669 19 6 -1.0925 -7.7382 1.3972 20 7 -0.6837 -8.6965 2.2016 21 14 -2.9194 -7.4762 1.1097 22 1 -3.1151 -6.3435 0.1693 23 1 -3.5110 -8.7085 0.5293 24 1 -3.5848 -7.1685 2.4011 25 6 2.2585 -6.5658 0.4602 26 6 2.2061 -1.1939 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5136 29 1 -0.3632 -0.8898 -0.5142 30 1 1.6629 2.1275 0.0004 31 1 5.3136 0.1561 0.0097 32 1 5.1823 -5.1704 0.5643 33 1 4.2023 -5.4158 -0.9477 34 1 1.8121 -4.1457 -0.5521 35 1 1.8767 -3.4140 1.1113 36 1 3.9139 -6.1080 2.6828 37 1 3.7542 -4.3348 2.6716 38 1 2.1274 -5.3827 4.2361 39 1 1.2981 -4.5467 2.9008 40 1 0.2696 -6.7425 3.2569 41 1 1.8559 -7.5363 3.0930 42 1 0.2635 -8.8883 2.2854 43 1 2.9111 -7.4326 0.5634 44 1 1.9486 -6.4623 -0.5796 45 1 1.6859 -2.1404 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981688881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:54 Heat of formation + Delta-G solvation = 36.670560 kcal Electronic energy + Delta-G solvation = -26864.518686 eV Core-core repulsion = 23268.793350 eV Total energy + Delta-G solvation = -3595.725336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25350 -41.12812 -39.45659 -37.67089 -34.84210 -34.51784 -33.47325 -32.30989 -31.27513 -28.31672 -27.68104 -27.45409 -27.02205 -25.15204 -24.01752 -23.49962 -22.33162 -20.58650 -19.55211 -19.19951 -18.31965 -18.00687 -17.63770 -17.03315 -16.67554 -16.29125 -15.89091 -15.63121 -15.40109 -15.18300 -14.96668 -14.80551 -14.61387 -14.18843 -14.06133 -13.95389 -13.64252 -13.46737 -13.40652 -13.26464 -13.00778 -12.89189 -12.69113 -12.48042 -11.98417 -11.84739 -11.79516 -11.67312 -11.34607 -11.28205 -11.04627 -10.94910 -10.53392 -10.36876 -10.07878 -9.78681 -8.82679 -8.14562 -5.39892 -0.46458 0.08164 1.59195 1.64242 1.69439 1.70463 1.85669 2.68976 2.71788 3.05531 3.20030 3.32149 3.44073 3.59462 3.70914 3.73551 3.75524 3.85966 3.93498 4.07673 4.18488 4.25199 4.34560 4.40885 4.47627 4.49690 4.56453 4.62494 4.70501 4.73988 4.81898 4.86050 4.87065 4.90168 5.00107 5.05054 5.14623 5.18278 5.22124 5.23031 5.32476 5.48949 5.56176 5.97734 6.46449 6.48753 6.77186 6.89573 7.13420 7.82431 8.31513 9.06079 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.004116 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.571858 B = 6800.365011 C = 8123.174664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.502 5.502 5 C 0.138 3.862 6 C -0.190 4.190 7 C 0.580 3.420 8 O -0.578 6.578 9 N -0.632 5.632 10 C 0.120 3.880 11 C -0.095 4.095 12 C 0.120 3.880 13 C -0.078 4.078 14 C -0.123 4.123 15 C 0.160 3.840 16 N -0.608 5.608 17 C -0.349 4.349 18 H 0.053 0.947 19 C -0.069 4.069 20 N -0.942 5.942 21 Si 1.111 2.889 22 H -0.267 1.267 23 H -0.297 1.297 24 H -0.291 1.291 25 C 0.164 3.836 26 C -0.060 4.060 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.193 0.807 31 H 0.163 0.837 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.037 0.963 41 H 0.001 0.999 42 H 0.254 0.746 43 H 0.018 0.982 44 H 0.062 0.938 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 16.287 -3.541 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.039 4.039 4 N -0.210 5.210 5 C -0.020 4.020 6 C -0.195 4.195 7 C 0.371 3.629 8 O -0.460 6.460 9 N -0.365 5.365 10 C -0.002 4.002 11 C -0.098 4.098 12 C -0.002 4.002 13 C -0.115 4.115 14 C -0.162 4.162 15 C 0.034 3.966 16 N -0.332 5.332 17 C -0.479 4.479 18 H 0.071 0.929 19 C -0.266 4.266 20 N -0.583 5.583 21 Si 0.937 3.063 22 H -0.192 1.192 23 H -0.225 1.225 24 H -0.218 1.218 25 C 0.038 3.962 26 C -0.085 4.085 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.210 0.790 31 H 0.180 0.820 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.064 0.936 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.832 16.805 -3.195 17.339 hybrid contribution 1.369 -0.928 -0.368 1.694 sum 4.201 15.877 -3.563 16.805 Atomic orbital electron populations 1.20849 0.87293 1.04705 1.03969 1.21271 0.99562 0.92956 1.00082 1.23536 0.89400 0.99232 0.91682 1.67838 1.09244 1.30477 1.13393 1.22949 1.00946 0.86286 0.91824 1.20869 0.95069 0.94476 1.09082 1.17989 0.86439 0.82714 0.75732 1.90736 1.15081 1.87158 1.53041 1.49988 1.11949 1.04848 1.69680 1.23324 0.98469 0.77664 1.00785 1.22406 0.95208 0.95863 0.96293 1.23426 0.83359 0.92796 1.00582 1.21061 0.96954 1.01514 0.91986 1.21831 0.96473 0.98470 0.99445 1.20626 0.97293 0.94092 0.84562 1.44245 1.03469 1.84754 1.00774 1.20128 0.91612 1.25641 1.10522 0.92924 1.27115 1.08800 0.92065 0.98663 1.70842 1.17321 1.27779 1.42316 0.82919 0.71393 0.75874 0.76138 1.19162 1.22467 1.21789 1.20868 0.87804 0.93136 0.94420 1.22431 0.92414 1.00744 0.92940 0.89618 0.88719 0.90815 0.79007 0.82030 0.89701 0.87954 0.88339 0.89187 0.91671 0.91903 0.91146 0.92270 0.94442 0.98097 0.93642 0.96437 0.91972 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.03 71.24 0.71 -0.57 16 2 C -0.14 -2.39 5.89 -19.81 -0.12 -2.50 16 3 C 0.12 2.10 10.85 84.71 0.92 3.02 16 4 N -0.50 -11.80 10.35 -194.75 -2.01 -13.82 16 5 C 0.14 3.54 10.77 85.02 0.92 4.46 16 6 C -0.19 -4.95 5.89 -19.99 -0.12 -5.07 16 7 C 0.58 17.52 8.00 86.78 0.69 18.21 16 8 O -0.58 -21.00 17.12 -3.89 -0.07 -21.07 16 9 N -0.63 -17.03 3.44 -846.72 -2.91 -19.94 16 10 C 0.12 3.05 7.98 86.30 0.69 3.74 16 11 C -0.10 -2.69 0.87 -52.04 -0.05 -2.74 16 12 C 0.12 3.06 5.22 86.31 0.45 3.51 16 13 C -0.08 -2.22 5.02 30.53 0.15 -2.06 16 14 C -0.12 -3.99 5.99 30.55 0.18 -3.81 16 15 C 0.16 6.83 4.76 86.19 0.41 7.24 16 16 N -0.61 -26.93 2.76 -700.45 -1.93 -28.86 16 17 C -0.35 -17.56 9.42 84.03 0.79 -16.77 16 18 H 0.05 2.61 7.95 -2.91 -0.02 2.59 16 19 C -0.07 -3.65 4.63 84.86 0.39 -3.25 16 20 N -0.94 -54.68 12.67 21.65 0.27 -54.40 16 21 Si 1.11 47.57 29.99 68.60 2.06 49.62 16 22 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.30 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 25 C 0.16 5.81 5.70 86.19 0.49 6.30 16 26 C -0.06 -1.29 8.89 22.73 0.20 -1.09 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 0.69 8.09 -2.38 -0.02 0.68 16 29 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 30 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.16 4.14 7.67 -2.91 -0.02 4.11 16 32 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 33 H 0.10 2.33 8.09 -2.39 -0.02 2.31 16 34 H 0.10 2.41 7.92 -2.39 -0.02 2.39 16 35 H 0.09 2.23 6.07 -2.39 -0.01 2.22 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.71 8.02 -2.39 -0.02 1.69 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 1.90 7.37 -2.39 -0.02 1.89 16 40 H 0.04 1.84 6.72 -2.39 -0.02 1.83 16 41 H 0.00 0.05 7.98 -2.38 -0.02 0.03 16 42 H 0.25 15.11 7.14 -92.71 -0.66 14.44 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 2.17 7.79 -2.39 -0.02 2.15 16 45 H 0.16 3.16 4.17 -2.91 -0.01 3.15 16 Total: -1.00 -66.69 359.33 3.23 -63.45 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.10 Total: 16.39 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.73 Total: 8.61 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -6.58 Total: -117.02 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.07 Total: -21.07 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.06 Total: 49.62 kcal Total: -66.69 3.23 -63.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981688881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.125 kcal (2) G-P(sol) polarization free energy of solvation -66.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds