Wall clock time and date at job start Tue Mar 31 2020 11:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38353 * 120.34524 * 2 1 4 4 N 1.31930 * 121.07627 * 180.02562 * 3 2 1 5 5 C 1.31690 * 121.87947 * 0.02562 * 4 3 2 6 6 C 1.39522 * 120.56809 * 359.97438 * 5 4 3 7 7 C 1.47839 * 120.55644 * 180.02562 * 6 5 4 8 8 O 1.21556 * 119.99482 * 179.97438 * 7 6 5 9 9 N 1.34770 * 120.00617 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00349 * 180.02562 * 9 7 6 11 11 C 1.51219 * 111.06492 * 78.37901 * 10 9 7 12 12 C 1.55690 * 104.60978 * 84.54372 * 11 10 9 13 13 C 1.56276 * 105.93894 * 7.24334 * 12 11 10 14 14 C 1.50311 * 101.75362 * 24.05487 * 13 12 11 15 15 H 1.08996 * 107.30128 * 66.83267 * 14 13 12 16 16 N 1.42702 * 128.32183 * 198.32735 * 14 13 12 17 17 C 1.36935 * 127.10247 * 332.31245 * 16 14 13 18 18 H 1.08005 * 119.99877 * 359.70150 * 17 16 14 19 19 C 1.38811 * 120.00369 * 179.43663 * 17 16 14 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99572 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99815 * 21 19 17 25 25 C 1.49298 * 105.79771 * 152.04840 * 16 14 13 26 26 C 1.52133 * 111.08716 * 298.98280 * 10 9 7 27 27 C 1.38351 * 120.34616 * 180.30631 * 2 1 3 28 28 H 1.08986 * 109.47010 * 89.99937 * 1 2 3 29 29 H 1.08996 * 109.46501 * 210.00168 * 1 2 3 30 30 H 1.08996 * 109.46921 * 329.99571 * 1 2 3 31 31 H 1.07997 * 119.46224 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.71626 * 180.02562 * 5 4 3 33 33 H 0.97009 * 119.99836 * 359.97438 * 9 7 6 34 34 H 1.09011 * 110.41023 * 203.32063 * 11 10 9 35 35 H 1.09000 * 110.41233 * 325.64165 * 11 10 9 36 36 H 1.09001 * 110.16217 * 126.36966 * 12 11 10 37 37 H 1.09006 * 110.15335 * 248.12984 * 12 11 10 38 38 H 1.08997 * 110.97206 * 142.37781 * 13 12 11 39 39 H 1.08992 * 110.97478 * 266.10888 * 13 12 11 40 40 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 41 41 H 1.09001 * 110.04443 * 110.83839 * 25 16 14 42 42 H 1.08995 * 110.04947 * 232.32092 * 25 16 14 43 43 H 1.09000 * 111.14914 * 167.50759 * 26 10 9 44 44 H 1.09000 * 111.18620 * 43.29216 * 26 10 9 45 45 H 1.08004 * 120.86279 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5253 1.2108 -0.0005 5 6 4.2350 0.1015 -0.0015 6 6 3.6054 -1.1436 -0.0016 7 6 4.4024 -2.3888 -0.0022 8 8 3.8434 -3.4681 -0.0017 9 7 5.7487 -2.3273 -0.0021 10 6 6.5384 -3.5612 -0.0033 11 6 6.5920 -4.1709 -1.3860 12 6 7.7624 -3.4300 -2.0969 13 6 8.4438 -2.5512 -0.9989 14 6 8.0628 -3.2819 0.2582 15 1 8.5700 -4.2464 0.2389 16 7 8.0759 -2.7989 1.6009 17 6 8.8820 -1.8206 2.1191 18 1 9.6088 -1.3298 1.4888 19 6 8.7612 -1.4560 3.4530 20 7 7.8716 -2.0502 4.2197 21 14 9.8603 -0.1210 4.1596 22 1 10.7683 0.3853 3.0993 23 1 9.0211 0.9939 4.6672 24 1 10.6657 -0.6816 5.2743 25 6 7.0249 -3.5757 2.3226 26 6 6.2542 -4.3941 1.2377 27 6 2.2061 -1.1939 -0.0064 28 1 -0.3633 0.0000 -1.0275 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6630 2.1274 -0.0004 32 1 5.3136 0.1560 -0.0015 33 1 6.1949 -1.4659 -0.0021 34 1 6.8009 -5.2389 -1.3227 35 1 5.6542 -3.9985 -1.9141 36 1 8.4753 -4.1509 -2.4971 37 1 7.3763 -2.7987 -2.8972 38 1 9.5256 -2.5322 -1.1302 39 1 8.0351 -1.5408 -0.9988 40 1 7.7868 -1.7951 5.1517 41 1 7.4876 -4.2516 3.0418 42 1 6.3424 -2.8963 2.8330 43 1 6.6636 -5.3994 1.1388 44 1 5.1864 -4.4264 1.4543 45 1 1.6859 -2.1404 -0.0110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990120156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:33 Heat of formation + Delta-G solvation = 37.140590 kcal Electronic energy + Delta-G solvation = -27363.597582 eV Core-core repulsion = 23767.892629 eV Total energy + Delta-G solvation = -3595.704954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83194 -39.97947 -37.90539 -34.48757 -33.90365 -33.07107 -32.19579 -31.46163 -29.80296 -27.40397 -26.98406 -25.95865 -24.44002 -23.96199 -22.74255 -20.81310 -20.42118 -19.62300 -18.82199 -17.65844 -16.72417 -16.49659 -16.42392 -15.62855 -14.98296 -14.63394 -14.47481 -14.37568 -14.17344 -13.91511 -13.48051 -13.44742 -13.11254 -12.80622 -12.73784 -12.57199 -12.34878 -11.99782 -11.96956 -11.43613 -11.37065 -11.02827 -10.95957 -10.84469 -10.53773 -10.28165 -10.09477 -10.01127 -9.86717 -9.77882 -9.72502 -9.45221 -9.11931 -9.02414 -8.68949 -8.51176 -6.88745 -5.76703 -3.11763 0.69076 1.16339 3.09297 3.36893 3.42711 3.45206 3.47882 3.91944 4.29905 4.43009 4.60583 4.62117 4.77508 4.88133 4.89225 5.10355 5.18917 5.23051 5.36691 5.42766 5.45603 5.56335 5.58551 5.68915 5.77385 5.80058 5.91307 5.93799 6.03399 6.10951 6.11479 6.23042 6.26602 6.33269 6.39689 6.47493 6.53588 6.65562 6.81146 6.87044 7.13998 7.49954 7.59390 7.76255 7.83299 7.95171 8.17410 8.57885 9.10849 9.77605 10.46370 11.35326 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.005138 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.619511 B = 5448.086434 C = 6763.172004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.151 4.151 3 C 0.114 3.886 4 N -0.483 5.483 5 C 0.132 3.868 6 C -0.173 4.173 7 C 0.562 3.438 8 O -0.543 6.543 9 N -0.681 5.681 10 C 0.131 3.869 11 C -0.112 4.112 12 C -0.117 4.117 13 C -0.117 4.117 14 C 0.159 3.841 15 H 0.022 0.978 16 N -0.583 5.583 17 C -0.232 4.232 18 H 0.080 0.920 19 C -0.003 4.003 20 N -0.917 5.917 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.178 3.822 26 C -0.142 4.142 27 C -0.022 4.022 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.252 0.748 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 1.736 -11.564 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.153 4.153 3 C -0.043 4.043 4 N -0.191 5.191 5 C -0.026 4.026 6 C -0.178 4.178 7 C 0.348 3.652 8 O -0.422 6.422 9 N -0.331 5.331 10 C 0.044 3.956 11 C -0.151 4.151 12 C -0.155 4.155 13 C -0.155 4.155 14 C 0.049 3.951 15 H 0.040 0.960 16 N -0.306 5.306 17 C -0.360 4.360 18 H 0.098 0.902 19 C -0.200 4.200 20 N -0.564 5.564 21 Si 0.739 3.261 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.054 3.946 26 C -0.181 4.181 27 C -0.048 4.048 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.209 1.880 -11.312 15.354 hybrid contribution 0.438 0.337 0.613 0.826 sum -9.771 2.217 -10.699 14.658 Atomic orbital electron populations 1.20706 0.89838 1.03317 1.02611 1.20904 0.97830 0.93858 1.02660 1.22860 0.90043 0.97529 0.93895 1.67698 1.07930 1.31108 1.12340 1.23048 1.00480 0.86842 0.92272 1.21152 0.95151 0.95259 1.06223 1.17912 0.82376 0.88037 0.76887 1.90714 1.71277 1.29372 1.50806 1.45588 1.04799 1.09997 1.72669 1.21523 0.95135 0.85208 0.93760 1.21905 0.98351 0.99609 0.95228 1.22824 0.96873 0.98269 0.97547 1.21831 1.00176 0.98822 0.94683 1.20721 0.91046 0.96243 0.87093 0.96039 1.43672 1.41207 1.42694 1.03070 1.19052 1.12344 1.10998 0.93636 0.90217 1.24792 0.99031 0.99742 0.96413 1.69931 1.36346 1.43835 1.06256 0.86110 0.79723 0.81310 0.79004 1.20449 1.21759 1.21770 1.22017 0.89211 0.92558 0.90781 1.22829 1.01784 0.97954 0.95490 1.21599 0.92539 0.98827 0.91853 0.90882 0.91102 0.91073 0.82588 0.82278 0.76334 0.90988 0.91704 0.91833 0.92175 0.91557 0.91803 0.93721 0.94692 0.91759 0.91665 0.90476 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.03 36.01 0.36 -0.45 16 2 C -0.15 -1.68 5.89 -104.53 -0.62 -2.29 16 3 C 0.11 1.34 10.85 -17.47 -0.19 1.15 16 4 N -0.48 -7.01 10.35 -12.91 -0.13 -7.15 16 5 C 0.13 1.97 10.71 -17.13 -0.18 1.78 16 6 C -0.17 -2.66 5.89 -104.82 -0.62 -3.27 16 7 C 0.56 9.86 7.17 -12.34 -0.09 9.78 16 8 O -0.54 -10.65 14.55 5.32 0.08 -10.57 16 9 N -0.68 -11.87 4.48 -47.69 -0.21 -12.08 16 10 C 0.13 2.36 0.42 -130.90 -0.05 2.31 16 11 C -0.11 -1.71 6.15 -26.20 -0.16 -1.87 16 12 C -0.12 -1.58 6.93 -23.54 -0.16 -1.74 16 13 C -0.12 -1.87 6.47 -26.31 -0.17 -2.04 16 14 C 0.16 3.11 2.64 -69.01 -0.18 2.93 16 15 H 0.02 0.45 7.95 -51.93 -0.41 0.04 16 16 N -0.58 -13.96 3.18 -163.01 -0.52 -14.48 16 17 C -0.23 -6.10 10.29 -15.06 -0.15 -6.25 16 18 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 19 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 20 N -0.92 -26.37 10.54 55.49 0.59 -25.78 16 21 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.18 4.28 5.35 -0.75 0.00 4.27 16 26 C -0.14 -2.83 6.10 -25.44 -0.16 -2.99 16 27 C -0.02 -0.29 9.39 -38.87 -0.37 -0.66 16 28 H 0.07 0.47 8.14 -51.94 -0.42 0.04 16 29 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.16 2.26 6.42 -52.49 -0.34 1.92 16 33 H 0.40 6.82 5.67 -40.82 -0.23 6.59 16 34 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.06 1.01 7.74 -51.93 -0.40 0.61 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.02 7.20 -51.93 -0.37 0.64 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.03 0.92 7.99 -51.93 -0.42 0.50 16 42 H 0.06 1.74 7.03 -51.93 -0.37 1.37 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.61 6.27 -51.93 -0.33 1.28 16 45 H 0.15 1.85 7.74 -52.48 -0.41 1.44 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -31.05 357.00 -9.30 -40.35 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.61 Total: 7.26 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.84 Total: 0.48 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.28 Total: -59.49 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.05 -9.30 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990120156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.494 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds