Wall clock time and date at job start Tue Mar 31 2020 10:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38142 * 119.54971 * 2 1 4 4 C 1.39821 * 119.00150 * 180.02562 * 3 2 1 5 5 C 1.48150 * 120.92673 * 179.97438 * 4 3 2 6 6 O 1.21510 * 119.99804 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00186 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99913 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47218 * 179.97438 * 8 7 5 10 10 C 1.29450 * 117.69312 * 94.99764 * 9 8 7 11 11 C 1.50328 * 123.64737 * 180.86052 * 10 9 8 12 12 N 1.46998 * 109.17070 * 349.02195 * 11 10 9 13 13 C 1.36931 * 121.38032 * 222.97029 * 12 11 10 14 14 H 1.07999 * 120.00200 * 155.97036 * 13 12 11 15 15 C 1.38818 * 119.99930 * 335.97418 * 13 12 11 16 16 N 1.31616 * 119.99424 * 344.51156 * 15 13 12 17 17 Si 1.86793 * 120.00033 * 164.51117 * 15 13 12 18 18 H 1.48499 * 109.47596 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47162 * 119.99807 * 17 15 13 20 20 H 1.48498 * 109.47325 * 239.99776 * 17 15 13 21 21 C 1.47341 * 117.24651 * 42.94668 * 12 11 10 22 22 C 1.49966 * 117.69514 * 274.74080 * 9 8 7 23 23 C 1.39824 * 118.15279 * 0.25059 * 4 3 2 24 24 C 1.38152 * 118.99843 * 359.52068 * 23 4 3 25 25 C 1.50697 * 119.54902 * 180.22473 * 24 23 4 26 26 N 1.31809 * 120.89667 * 0.49671 * 24 23 4 27 27 H 1.08997 * 109.46869 * 90.00316 * 1 2 3 28 28 H 1.08995 * 109.47118 * 209.99827 * 1 2 3 29 29 H 1.08995 * 109.46591 * 330.00151 * 1 2 3 30 30 H 1.07999 * 120.50240 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99919 * 359.97438 * 7 5 4 32 32 H 1.09007 * 109.47305 * 59.99701 * 8 7 5 33 33 H 1.09003 * 109.47431 * 299.99836 * 8 7 5 34 34 H 1.08000 * 118.17404 * 0.88545 * 10 9 8 35 35 H 1.08997 * 109.52109 * 108.93600 * 11 10 9 36 36 H 1.09001 * 109.51633 * 229.11453 * 11 10 9 37 37 H 0.97005 * 119.99607 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.78033 * 57.81404 * 21 12 11 39 39 H 1.09001 * 109.77700 * 178.61818 * 21 12 11 40 40 H 1.08997 * 109.31931 * 281.28933 * 22 9 8 41 41 H 1.09009 * 109.31429 * 40.71615 * 22 9 8 42 42 H 1.07996 * 120.50081 * 179.73045 * 23 4 3 43 43 H 1.08998 * 109.47722 * 270.26009 * 25 24 23 44 44 H 1.08999 * 109.47154 * 30.26770 * 25 24 23 45 45 H 1.09000 * 109.46924 * 150.25759 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1884 1.2017 0.0000 4 6 3.5865 1.1884 -0.0005 5 6 4.3600 2.4519 -0.0011 6 8 3.7797 3.5195 -0.0016 7 7 5.7073 2.4172 -0.0022 8 6 6.4722 3.6667 -0.0022 9 6 7.9462 3.3534 -0.0028 10 6 8.5550 3.3262 -1.1449 11 6 10.0163 3.0104 -1.3026 12 7 10.6555 3.0094 0.0211 13 6 11.8762 3.5958 0.2239 14 1 12.1562 3.9327 1.2110 15 6 12.7538 3.7573 -0.8395 16 7 12.5613 3.0916 -1.9584 17 14 14.2077 4.9195 -0.6823 18 1 14.1999 5.5428 0.6655 19 1 15.4705 4.1607 -0.8699 20 1 14.1086 5.9793 -1.7178 21 6 9.9282 2.3519 1.1210 22 6 8.6057 3.1008 1.3202 23 6 4.2344 -0.0507 -0.0065 24 6 3.4740 -1.2041 -0.0014 25 6 4.1595 -2.5462 -0.0025 26 7 2.1572 -1.1467 -0.0009 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.6492 2.1375 0.0004 31 1 6.1706 1.5650 -0.0022 32 1 6.2243 4.2445 0.8883 33 1 6.2230 4.2453 -0.8917 34 1 7.9813 3.5429 -2.0339 35 1 10.1292 2.0286 -1.7624 36 1 10.4859 3.7651 -1.9334 37 1 13.1744 3.2047 -2.7017 38 1 9.7319 1.3112 0.8631 39 1 10.5196 2.4008 2.0353 40 1 8.7973 4.0528 1.8151 41 1 7.9438 2.5001 1.9441 42 1 5.3130 -0.1053 -0.0115 43 1 4.3243 -2.8692 -1.0304 44 1 5.1175 -2.4653 0.5110 45 1 3.5323 -3.2748 0.5112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000734713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:37 Heat of formation + Delta-G solvation = 29.628937 kcal Electronic energy + Delta-G solvation = -25303.392482 eV Core-core repulsion = 21707.361799 eV Total energy + Delta-G solvation = -3596.030683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95614 -39.39537 -37.80911 -35.13883 -34.08583 -33.40736 -32.66688 -30.90278 -29.78894 -29.41403 -27.39005 -26.85363 -24.85663 -23.48867 -22.77618 -22.16970 -21.15446 -20.43284 -18.04545 -17.61097 -17.09879 -16.10218 -15.71575 -15.58860 -15.49847 -15.15416 -14.86296 -14.75430 -14.04973 -13.84786 -13.70168 -13.59766 -13.55006 -13.32142 -13.05197 -12.72243 -12.43623 -12.37279 -12.22445 -12.09862 -11.95892 -11.63181 -11.44316 -10.97122 -10.79759 -10.53595 -10.38145 -10.33009 -10.10622 -9.88588 -9.77498 -9.64975 -9.11684 -9.11386 -8.74809 -8.14744 -6.81213 -5.85610 -3.24533 0.46281 0.75125 2.45290 2.70113 3.30860 3.34268 3.42265 3.44143 3.52134 3.82354 4.25658 4.39982 4.44635 4.67893 4.72173 4.96758 5.08709 5.14651 5.20200 5.24685 5.27055 5.30985 5.32435 5.33598 5.50820 5.60279 5.71309 5.72765 5.77426 5.78033 5.87398 5.99544 6.08668 6.25169 6.28085 6.34880 6.43946 6.65927 6.79552 7.08376 7.17636 7.23895 7.40107 7.64488 7.66412 7.75915 8.02104 8.31927 9.13536 9.76130 10.33722 11.24924 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.002470 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.033426 B =11334.312458 C =11906.255225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.128 3.872 3 C -0.124 4.124 4 C -0.077 4.077 5 C 0.554 3.446 6 O -0.535 6.535 7 N -0.710 5.710 8 C 0.157 3.843 9 C -0.169 4.169 10 C -0.121 4.121 11 C 0.193 3.807 12 N -0.595 5.595 13 C -0.246 4.246 14 H 0.069 0.931 15 C -0.002 4.002 16 N -0.909 5.909 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.144 3.856 22 C -0.090 4.090 23 C -0.148 4.148 24 C 0.131 3.869 25 C -0.105 4.105 26 N -0.473 5.473 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.402 0.598 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.254 0.746 38 H 0.023 0.977 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.953 -8.230 3.428 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.010 4.010 3 C -0.145 4.145 4 C -0.087 4.087 5 C 0.339 3.661 6 O -0.412 6.412 7 N -0.361 5.361 8 C 0.034 3.966 9 C -0.170 4.170 10 C -0.142 4.142 11 C 0.068 3.932 12 N -0.318 5.318 13 C -0.375 4.375 14 H 0.087 0.913 15 C -0.199 4.199 16 N -0.555 5.555 17 Si 0.735 3.265 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.017 3.983 22 C -0.129 4.129 23 C -0.169 4.169 24 C -0.007 4.007 25 C -0.163 4.163 26 N -0.184 5.184 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.238 0.762 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.158 0.842 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.675 -8.178 3.301 22.477 hybrid contribution 1.511 1.077 -0.132 1.860 sum -19.164 -7.101 3.169 20.682 Atomic orbital electron populations 1.20730 0.88235 1.03721 1.03358 1.21275 0.97241 0.87670 0.94829 1.22081 0.93252 1.00055 0.99078 1.20424 0.94524 0.93522 1.00271 1.18193 0.82434 0.88314 0.77128 1.90770 1.69967 1.30750 1.49741 1.46126 1.05395 1.10872 1.73714 1.20537 0.88915 0.84930 1.02169 1.20483 0.92715 1.07442 0.96329 1.23322 0.99944 0.94830 0.96102 1.19773 0.84752 1.00368 0.88286 1.44133 1.18754 1.64294 1.04655 1.19223 0.91414 1.31317 0.95567 0.91276 1.24996 0.97829 0.99735 0.97380 1.70013 1.38681 1.41816 1.04970 0.86177 0.82189 0.80587 0.77571 1.20286 1.21718 1.21563 1.20991 0.91147 0.93604 0.92531 1.20795 0.97834 1.00820 0.93494 1.22184 1.01491 0.92056 1.01123 1.21246 0.89129 0.95783 0.94502 1.20758 0.99999 0.92015 1.03499 1.67232 1.09680 1.29572 1.11962 0.90161 0.90257 0.90399 0.83540 0.76238 0.91246 0.91320 0.88726 0.94007 0.88795 0.93614 0.95865 0.92400 0.91626 0.92934 0.84175 0.90045 0.90232 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.17 36.01 0.37 -0.34 16 2 C 0.13 1.30 6.78 -82.63 -0.56 0.74 16 3 C -0.12 -1.37 9.31 -39.03 -0.36 -1.73 16 4 C -0.08 -0.90 5.91 -104.64 -0.62 -1.52 16 5 C 0.55 7.63 7.80 -12.19 -0.10 7.54 16 6 O -0.53 -9.04 16.45 5.36 0.09 -8.95 16 7 N -0.71 -9.06 5.51 -62.33 -0.34 -9.40 16 8 C 0.16 2.26 5.66 -5.19 -0.03 2.23 16 9 C -0.17 -2.76 5.22 -100.99 -0.53 -3.29 16 10 C -0.12 -2.20 9.47 -35.78 -0.34 -2.54 16 11 C 0.19 4.40 5.23 -5.10 -0.03 4.38 16 12 N -0.60 -14.37 3.01 -173.56 -0.52 -14.89 16 13 C -0.25 -6.57 9.71 -15.06 -0.15 -6.72 16 14 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 15 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 16 N -0.91 -25.64 11.08 55.49 0.61 -25.02 16 17 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.14 2.83 6.59 -3.43 -0.02 2.81 16 22 C -0.09 -1.50 5.95 -28.09 -0.17 -1.66 16 23 C -0.15 -1.48 9.24 -39.02 -0.36 -1.84 16 24 C 0.13 1.31 6.78 -82.63 -0.56 0.75 16 25 C -0.11 -0.75 10.16 36.00 0.37 -0.38 16 26 N -0.47 -5.23 10.16 -5.79 -0.06 -5.29 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 30 H 0.15 1.52 7.74 -52.49 -0.41 1.11 16 31 H 0.40 4.42 6.61 -40.82 -0.27 4.15 16 32 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 33 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 34 H 0.09 1.55 7.73 -52.49 -0.41 1.14 16 35 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 37 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.14 1.12 6.54 -52.49 -0.34 0.77 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -31.53 372.43 -9.57 -41.10 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.77 Total: 2.21 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.17 Total: -1.72 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.31 Total: -54.60 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.53 -9.57 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000734713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.733 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds