Wall clock time and date at job start Tue Mar 31 2020 10:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38142 * 119.54971 * 2 1 4 4 C 1.39821 * 119.00150 * 180.02562 * 3 2 1 5 5 C 1.48150 * 120.92673 * 179.97438 * 4 3 2 6 6 O 1.21510 * 119.99804 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00186 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99913 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47218 * 179.97438 * 8 7 5 10 10 C 1.29450 * 117.69312 * 94.99764 * 9 8 7 11 11 C 1.50328 * 123.64737 * 180.86052 * 10 9 8 12 12 N 1.46998 * 109.17070 * 349.02195 * 11 10 9 13 13 C 1.36931 * 121.38032 * 222.97029 * 12 11 10 14 14 H 1.07999 * 120.00200 * 155.97036 * 13 12 11 15 15 C 1.38818 * 119.99930 * 335.97418 * 13 12 11 16 16 N 1.31616 * 119.99424 * 344.51156 * 15 13 12 17 17 Si 1.86793 * 120.00033 * 164.51117 * 15 13 12 18 18 H 1.48499 * 109.47596 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47162 * 119.99807 * 17 15 13 20 20 H 1.48498 * 109.47325 * 239.99776 * 17 15 13 21 21 C 1.47341 * 117.24651 * 42.94668 * 12 11 10 22 22 C 1.49966 * 117.69514 * 274.74080 * 9 8 7 23 23 C 1.39824 * 118.15279 * 0.25059 * 4 3 2 24 24 C 1.38152 * 118.99843 * 359.52068 * 23 4 3 25 25 C 1.50697 * 119.54902 * 180.22473 * 24 23 4 26 26 N 1.31809 * 120.89667 * 0.49671 * 24 23 4 27 27 H 1.08997 * 109.46869 * 90.00316 * 1 2 3 28 28 H 1.08995 * 109.47118 * 209.99827 * 1 2 3 29 29 H 1.08995 * 109.46591 * 330.00151 * 1 2 3 30 30 H 1.07999 * 120.50240 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99919 * 359.97438 * 7 5 4 32 32 H 1.09007 * 109.47305 * 59.99701 * 8 7 5 33 33 H 1.09003 * 109.47431 * 299.99836 * 8 7 5 34 34 H 1.08000 * 118.17404 * 0.88545 * 10 9 8 35 35 H 1.08997 * 109.52109 * 108.93600 * 11 10 9 36 36 H 1.09001 * 109.51633 * 229.11453 * 11 10 9 37 37 H 0.97005 * 119.99607 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.78033 * 57.81404 * 21 12 11 39 39 H 1.09001 * 109.77700 * 178.61818 * 21 12 11 40 40 H 1.08997 * 109.31931 * 281.28933 * 22 9 8 41 41 H 1.09009 * 109.31429 * 40.71615 * 22 9 8 42 42 H 1.07996 * 120.50081 * 179.73045 * 23 4 3 43 43 H 1.08998 * 109.47722 * 270.26009 * 25 24 23 44 44 H 1.08999 * 109.47154 * 30.26770 * 25 24 23 45 45 H 1.09000 * 109.46924 * 150.25759 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1884 1.2017 0.0000 4 6 3.5865 1.1884 -0.0005 5 6 4.3600 2.4519 -0.0011 6 8 3.7797 3.5195 -0.0016 7 7 5.7073 2.4172 -0.0022 8 6 6.4722 3.6667 -0.0022 9 6 7.9462 3.3534 -0.0028 10 6 8.5550 3.3262 -1.1449 11 6 10.0163 3.0104 -1.3026 12 7 10.6555 3.0094 0.0211 13 6 11.8762 3.5958 0.2239 14 1 12.1562 3.9327 1.2110 15 6 12.7538 3.7573 -0.8395 16 7 12.5613 3.0916 -1.9584 17 14 14.2077 4.9195 -0.6823 18 1 14.1999 5.5428 0.6655 19 1 15.4705 4.1607 -0.8699 20 1 14.1086 5.9793 -1.7178 21 6 9.9282 2.3519 1.1210 22 6 8.6057 3.1008 1.3202 23 6 4.2344 -0.0507 -0.0065 24 6 3.4740 -1.2041 -0.0014 25 6 4.1595 -2.5462 -0.0025 26 7 2.1572 -1.1467 -0.0009 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.6492 2.1375 0.0004 31 1 6.1706 1.5650 -0.0022 32 1 6.2243 4.2445 0.8883 33 1 6.2230 4.2453 -0.8917 34 1 7.9813 3.5429 -2.0339 35 1 10.1292 2.0286 -1.7624 36 1 10.4859 3.7651 -1.9334 37 1 13.1744 3.2047 -2.7017 38 1 9.7319 1.3112 0.8631 39 1 10.5196 2.4008 2.0353 40 1 8.7973 4.0528 1.8151 41 1 7.9438 2.5001 1.9441 42 1 5.3130 -0.1053 -0.0115 43 1 4.3243 -2.8692 -1.0304 44 1 5.1175 -2.4653 0.5110 45 1 3.5323 -3.2748 0.5112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000734713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:36 Heat of formation + Delta-G solvation = 10.682556 kcal Electronic energy + Delta-G solvation = -25304.214059 eV Core-core repulsion = 21707.361799 eV Total energy + Delta-G solvation = -3596.852260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81770 -40.44743 -39.31199 -36.53558 -34.95908 -34.53819 -33.89515 -32.52479 -31.42532 -30.01131 -28.78180 -27.66780 -26.34067 -24.77556 -24.25736 -22.96236 -22.70264 -21.46030 -19.52690 -18.89251 -17.99989 -17.44544 -17.04801 -16.72322 -16.58465 -16.48721 -15.92774 -15.71936 -15.51800 -15.28531 -15.17095 -14.71174 -14.50583 -14.18250 -14.07588 -13.94770 -13.66666 -13.27489 -13.25800 -12.97783 -12.93909 -12.82939 -12.79838 -12.68873 -12.61439 -12.21415 -12.10352 -11.71363 -11.54590 -11.26158 -10.96897 -10.70263 -10.57971 -10.22708 -9.83700 -9.68672 -8.75459 -7.89177 -5.29965 -0.39909 -0.00055 1.11629 1.45877 1.48463 1.57998 1.72178 2.18448 2.50695 2.70459 3.17490 3.28259 3.41245 3.58909 3.64196 3.84545 3.90818 3.94811 3.98202 4.33018 4.41125 4.47567 4.52655 4.53144 4.62377 4.71222 4.74322 4.75989 4.82100 4.82761 4.90658 4.96245 5.03818 5.09636 5.14891 5.20043 5.23259 5.23689 5.39280 5.47893 5.61564 5.62785 5.74765 6.14135 6.33599 6.35647 6.89156 6.97815 7.13314 7.83346 8.36525 9.19466 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.002470 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.033426 B =11334.312458 C =11906.255225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.091 4.091 5 C 0.557 3.443 6 O -0.570 6.570 7 N -0.701 5.701 8 C 0.166 3.834 9 C -0.140 4.140 10 C -0.138 4.138 11 C 0.204 3.796 12 N -0.615 5.615 13 C -0.254 4.254 14 H 0.070 0.930 15 C -0.054 4.054 16 N -0.939 5.939 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.292 1.292 20 H -0.292 1.292 21 C 0.138 3.862 22 C -0.085 4.085 23 C -0.146 4.146 24 C 0.124 3.876 25 C -0.104 4.104 26 N -0.489 5.489 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.413 0.587 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.017 0.983 36 H 0.057 0.943 37 H 0.249 0.751 38 H 0.031 0.969 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.161 0.839 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.219 -8.799 4.647 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.015 4.015 3 C -0.155 4.155 4 C -0.102 4.102 5 C 0.344 3.656 6 O -0.450 6.450 7 N -0.352 5.352 8 C 0.043 3.957 9 C -0.141 4.141 10 C -0.159 4.159 11 C 0.079 3.921 12 N -0.339 5.339 13 C -0.384 4.384 14 H 0.088 0.912 15 C -0.249 4.249 16 N -0.586 5.586 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.219 1.219 20 H -0.219 1.219 21 C 0.013 3.987 22 C -0.123 4.123 23 C -0.166 4.166 24 C -0.014 4.014 25 C -0.161 4.161 26 N -0.201 5.201 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.165 0.835 31 H 0.250 0.750 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.178 0.822 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.954 -8.774 4.548 24.075 hybrid contribution 1.850 1.180 -0.441 2.238 sum -20.104 -7.594 4.107 21.879 Atomic orbital electron populations 1.20820 0.86151 1.04628 1.04279 1.21726 0.98692 0.87141 0.93940 1.22199 0.93229 1.00546 0.99540 1.20350 0.94783 0.93172 1.01869 1.18432 0.82449 0.88531 0.76148 1.90753 1.70604 1.32158 1.51475 1.45937 1.05159 1.10792 1.73311 1.20332 0.87337 0.85620 1.02383 1.20573 0.93654 1.04363 0.95527 1.22979 0.97354 0.97708 0.97840 1.19414 0.87344 0.98032 0.87313 1.44414 1.18613 1.64880 1.06038 1.19533 0.92395 1.30945 0.95557 0.91210 1.25718 1.00494 1.01373 0.97347 1.70163 1.39600 1.43285 1.05518 0.85220 0.79118 0.78536 0.77679 1.19181 1.21939 1.21921 1.21188 0.92222 0.94116 0.91151 1.20735 0.96687 1.00887 0.94019 1.22378 1.02516 0.91316 1.00423 1.21743 0.89045 0.96980 0.93636 1.20846 1.00495 0.90478 1.04301 1.67331 1.10374 1.29961 1.12459 0.89120 0.89865 0.88973 0.83468 0.74972 0.90793 0.91546 0.86932 0.96574 0.92522 0.94140 0.95086 0.92279 0.91793 0.89355 0.82170 0.89184 0.88588 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.17 71.24 0.72 -0.50 16 2 C 0.12 2.32 6.78 42.54 0.29 2.61 16 3 C -0.13 -2.82 9.31 22.63 0.21 -2.61 16 4 C -0.09 -2.01 5.91 -19.88 -0.12 -2.12 16 5 C 0.56 14.46 7.80 86.88 0.68 15.14 16 6 O -0.57 -18.68 16.45 -3.75 -0.06 -18.74 16 7 N -0.70 -16.14 5.51 -469.42 -2.58 -18.72 16 8 C 0.17 4.38 5.66 85.63 0.48 4.86 16 9 C -0.14 -4.28 5.22 -15.13 -0.08 -4.36 16 10 C -0.14 -4.92 9.47 27.11 0.26 -4.66 16 11 C 0.20 9.51 5.23 85.42 0.45 9.96 16 12 N -0.62 -29.81 3.01 -703.03 -2.11 -31.92 16 13 C -0.25 -13.68 9.71 84.04 0.82 -12.86 16 14 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 15 C -0.05 -3.00 5.01 84.86 0.43 -2.57 16 16 N -0.94 -54.46 11.08 21.65 0.24 -54.22 16 17 Si 0.97 44.46 29.58 68.60 2.03 46.49 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 C 0.14 5.25 6.59 86.31 0.57 5.82 16 22 C -0.08 -2.57 5.95 29.71 0.18 -2.39 16 23 C -0.15 -2.61 9.24 22.63 0.21 -2.40 16 24 C 0.12 2.23 6.78 42.54 0.29 2.51 16 25 C -0.10 -1.23 10.16 71.23 0.72 -0.51 16 26 N -0.49 -10.05 10.16 -172.23 -1.75 -11.80 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.83 8.07 -2.39 -0.02 0.81 16 30 H 0.15 2.97 7.74 -2.91 -0.02 2.94 16 31 H 0.41 7.81 6.61 -92.71 -0.61 7.20 16 32 H 0.07 1.96 8.11 -2.38 -0.02 1.94 16 33 H 0.07 1.84 7.78 -2.39 -0.02 1.82 16 34 H 0.11 3.58 7.73 -2.91 -0.02 3.56 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 3.03 6.41 -2.39 -0.02 3.02 16 37 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 2.20 7.96 -2.39 -0.02 2.18 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.16 2.07 6.54 -2.91 -0.02 2.05 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.10 0.81 8.08 -2.39 -0.02 0.79 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -68.90 372.43 2.25 -66.65 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.38 Total: 16.35 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 6.10 Total: 5.91 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -6.21 Total: -116.67 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.06 Total: -18.74 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.90 2.25 -66.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000734713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.337 kcal (2) G-P(sol) polarization free energy of solvation -68.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds