Wall clock time and date at job start Tue Mar 31 2020 11:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38611 * 120.31989 * 2 1 4 4 N 1.31501 * 120.89779 * 180.02562 * 3 2 1 5 5 C 1.32739 * 121.64149 * 0.02562 * 4 3 2 6 6 C 1.48174 * 119.72002 * 180.27721 * 5 4 3 7 7 O 1.21515 * 120.00184 * 179.72428 * 6 5 4 8 8 N 1.34770 * 119.99905 * 359.72106 * 6 5 4 9 9 C 1.46504 * 119.99989 * 179.97438 * 8 6 5 10 10 C 1.50707 * 109.47042 * 179.97438 * 9 8 6 11 11 C 1.29457 * 117.69077 * 95.00321 * 10 9 8 12 12 C 1.50324 * 123.64896 * 180.85951 * 11 10 9 13 13 N 1.47011 * 109.16605 * 349.01920 * 12 11 10 14 14 C 1.36934 * 121.37593 * 222.97065 * 13 12 11 15 15 H 1.08001 * 120.00068 * 155.96994 * 14 13 12 16 16 C 1.38815 * 119.99730 * 335.97388 * 14 13 12 17 17 N 1.31615 * 120.00337 * 344.51511 * 16 14 13 18 18 Si 1.86805 * 119.99789 * 164.51734 * 16 14 13 19 19 H 1.48499 * 109.47065 * 89.99679 * 18 16 14 20 20 H 1.48490 * 109.47006 * 209.99696 * 18 16 14 21 21 H 1.48496 * 109.47238 * 329.99860 * 18 16 14 22 22 C 1.47339 * 117.24911 * 42.94950 * 13 12 11 23 23 C 1.49962 * 117.69540 * 274.73946 * 10 9 8 24 24 C 1.39266 * 120.56150 * 359.97438 * 5 4 3 25 25 C 1.38573 * 120.32805 * 180.02562 * 2 1 3 26 26 C 1.50704 * 120.75386 * 359.95593 * 25 2 1 27 27 H 1.09003 * 109.46434 * 269.97160 * 1 2 3 28 28 H 1.08996 * 109.47518 * 29.96918 * 1 2 3 29 29 H 1.08999 * 109.47134 * 149.97722 * 1 2 3 30 30 H 1.07995 * 119.55392 * 0.02678 * 3 2 1 31 31 H 0.97004 * 120.00122 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47046 * 300.00216 * 9 8 6 33 33 H 1.08994 * 109.46938 * 60.00270 * 9 8 6 34 34 H 1.08000 * 118.17679 * 0.87775 * 11 10 9 35 35 H 1.08996 * 109.51995 * 108.92682 * 12 11 10 36 36 H 1.08997 * 109.51765 * 229.11353 * 12 11 10 37 37 H 0.96993 * 120.00055 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.78153 * 57.80707 * 22 13 12 39 39 H 1.08998 * 109.78250 * 178.61849 * 22 13 12 40 40 H 1.08999 * 109.31613 * 281.29122 * 23 10 9 41 41 H 1.09004 * 109.31692 * 40.72052 * 23 10 9 42 42 H 1.08002 * 120.47796 * 180.02562 * 24 5 4 43 43 H 1.09004 * 109.46558 * 270.01977 * 26 25 2 44 44 H 1.08990 * 109.47357 * 30.02074 * 26 25 2 45 45 H 1.08999 * 109.46898 * 150.02214 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2098 -0.0005 5 6 4.2294 0.0868 -0.0015 6 6 5.7098 0.1514 0.0042 7 8 6.3627 -0.8734 0.0083 8 7 6.3321 1.3468 0.0047 9 6 7.7957 1.4107 0.0109 10 6 8.2356 2.8521 0.0095 11 6 8.5019 3.4009 1.1514 12 6 8.9327 4.8327 1.3071 13 7 9.2472 5.3888 -0.0169 14 6 10.3524 6.1722 -0.2169 15 1 10.7871 6.2513 -1.2024 16 6 10.9142 6.8645 0.8471 17 7 10.2338 7.0216 1.9627 18 14 12.6359 7.5733 0.6954 19 1 12.5565 8.9562 0.1602 20 1 13.2812 7.5962 2.0325 21 1 13.4385 6.7308 -0.2272 22 6 8.3244 5.0682 -1.1198 23 6 8.3398 3.5478 -1.3149 24 6 3.5925 -1.1517 -0.0016 25 6 2.2068 -1.1961 -0.0005 26 6 1.4780 -2.5152 -0.0001 27 1 -0.3632 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6648 2.1306 0.0004 31 1 5.8109 2.1649 0.0017 32 1 8.1772 0.9148 0.9034 33 1 8.1849 0.9117 -0.8765 34 1 8.4096 2.7964 2.0416 35 1 8.1264 5.4082 1.7618 36 1 9.8177 4.8797 1.9416 37 1 10.6262 7.5057 2.7060 38 1 7.3177 5.4012 -0.8672 39 1 8.6576 5.5593 -2.0341 40 1 9.2677 3.2529 -1.8050 41 1 7.4964 3.2581 -1.9418 42 1 4.1696 -2.0645 -0.0020 43 1 1.3028 -2.8331 1.0277 44 1 0.5232 -2.4030 -0.5136 45 1 2.0812 -3.2636 -0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000986805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:46 Heat of formation + Delta-G solvation = 9.691417 kcal Electronic energy + Delta-G solvation = -25208.354460 eV Core-core repulsion = 21611.459221 eV Total energy + Delta-G solvation = -3596.895239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78662 -40.36550 -39.29230 -36.49600 -35.65937 -34.49310 -33.42370 -32.61434 -31.44657 -29.61193 -28.83654 -27.82976 -25.94795 -24.46627 -23.79793 -23.74704 -22.73565 -21.32475 -19.55132 -19.01308 -18.09078 -17.43113 -17.03435 -16.73568 -16.52521 -16.25053 -16.00409 -15.63980 -15.49436 -15.25788 -15.20304 -14.74480 -14.50554 -14.00133 -13.92704 -13.76647 -13.66489 -13.64608 -13.43028 -13.28417 -12.94365 -12.80442 -12.71206 -12.58742 -12.46085 -12.25302 -12.12648 -11.72212 -11.52204 -11.27342 -10.69243 -10.56283 -10.50727 -10.26220 -9.88106 -9.68616 -8.76054 -7.88766 -5.30127 -0.41185 0.19330 1.13393 1.46630 1.48406 1.57929 1.62628 2.25786 2.51019 2.79112 3.14038 3.28343 3.59767 3.69033 3.74372 3.84562 3.87362 3.90563 3.94140 4.24914 4.40408 4.50989 4.51871 4.60736 4.64396 4.69735 4.70435 4.77562 4.82101 4.89199 4.89579 5.00060 5.08015 5.13300 5.19274 5.21832 5.27277 5.37465 5.38714 5.46003 5.60721 5.69003 5.73673 6.13518 6.33217 6.35396 6.76959 7.06027 7.12652 7.82333 8.36906 9.20098 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029548 B = 0.002338 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.379200 B =11973.900494 C =12403.843231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.109 4.109 3 C 0.091 3.909 4 N -0.479 5.479 5 C 0.048 3.952 6 C 0.566 3.434 7 O -0.572 6.572 8 N -0.695 5.695 9 C 0.164 3.836 10 C -0.140 4.140 11 C -0.141 4.141 12 C 0.206 3.794 13 N -0.615 5.615 14 C -0.257 4.257 15 H 0.071 0.929 16 C -0.055 4.055 17 N -0.940 5.940 18 Si 0.969 3.031 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.272 1.272 22 C 0.139 3.861 23 C -0.084 4.084 24 C -0.117 4.117 25 C -0.056 4.056 26 C -0.117 4.117 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.187 0.813 31 H 0.415 0.585 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.014 0.986 36 H 0.059 0.941 37 H 0.250 0.750 38 H 0.026 0.974 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.143 0.857 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.638 -17.659 -4.612 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.111 4.111 3 C -0.069 4.069 4 N -0.190 5.190 5 C -0.088 4.088 6 C 0.352 3.648 7 O -0.452 6.452 8 N -0.345 5.345 9 C 0.042 3.958 10 C -0.141 4.141 11 C -0.161 4.161 12 C 0.081 3.919 13 N -0.339 5.339 14 C -0.387 4.387 15 H 0.089 0.911 16 C -0.250 4.250 17 N -0.587 5.587 18 Si 0.797 3.203 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.197 1.197 22 C 0.014 3.986 23 C -0.122 4.122 24 C -0.138 4.138 25 C -0.064 4.064 26 C -0.173 4.173 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.204 0.796 31 H 0.252 0.748 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.161 0.839 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.580 -17.498 -4.499 28.145 hybrid contribution 0.736 0.409 0.412 0.937 sum -20.844 -17.089 -4.087 27.262 Atomic orbital electron populations 1.20947 0.87036 1.04967 1.04101 1.21448 0.99719 0.92725 0.97252 1.23253 0.88526 0.99521 0.95590 1.67493 1.10203 1.30135 1.11199 1.20887 0.93067 0.90828 1.04039 1.18273 0.86914 0.83480 0.76144 1.90736 1.66945 1.35082 1.52472 1.45946 1.07484 1.08705 1.72368 1.20361 0.79334 0.93832 1.02306 1.20594 1.03294 0.94609 0.95622 1.22975 0.97698 0.97690 0.97747 1.19400 0.97671 0.87489 0.87368 1.44410 1.26528 1.57182 1.05759 1.19513 1.03289 1.20096 0.95784 0.91125 1.25764 1.02621 0.99337 0.97298 1.70167 1.37262 1.45529 1.05708 0.85243 0.80193 0.78227 0.76604 1.21041 1.21946 1.19679 1.21168 0.92484 0.93719 0.91238 1.20718 1.01747 0.95766 0.93988 1.22101 0.95498 0.98205 0.98045 1.20587 0.92318 0.97750 0.95749 1.20978 1.00966 0.91172 1.04176 0.89192 0.89529 0.89244 0.79617 0.74759 0.91505 0.90768 0.87034 0.96828 0.92288 0.94096 0.95573 0.92052 0.91493 0.89852 0.83904 0.89152 0.88423 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 9.65 71.24 0.69 0.12 16 2 C -0.11 -1.42 5.91 -19.69 -0.12 -1.54 16 3 C 0.09 1.55 10.86 84.83 0.92 2.47 16 4 N -0.48 -11.47 9.54 -184.90 -1.76 -13.23 16 5 C 0.05 1.26 6.75 41.90 0.28 1.54 16 6 C 0.57 17.42 7.81 86.88 0.68 18.10 16 7 O -0.57 -20.45 16.32 -3.76 -0.06 -20.52 16 8 N -0.70 -20.42 5.54 -469.39 -2.60 -23.02 16 9 C 0.16 5.05 5.66 85.63 0.48 5.53 16 10 C -0.14 -4.87 5.22 -15.14 -0.08 -4.95 16 11 C -0.14 -5.53 9.47 27.10 0.26 -5.27 16 12 C 0.21 10.22 5.23 85.42 0.45 10.67 16 13 N -0.61 -31.48 3.01 -703.01 -2.11 -33.60 16 14 C -0.26 -14.33 9.71 84.03 0.82 -13.51 16 15 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 16 C -0.06 -3.14 5.01 84.86 0.43 -2.72 16 17 N -0.94 -56.12 11.08 21.65 0.24 -55.88 16 18 Si 0.97 45.52 29.58 68.60 2.03 47.55 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 22 C 0.14 5.77 6.59 86.32 0.57 6.33 16 23 C -0.08 -2.86 5.95 29.72 0.18 -2.69 16 24 C -0.12 -2.53 9.34 22.61 0.21 -2.31 16 25 C -0.06 -0.84 5.91 -19.69 -0.12 -0.95 16 26 C -0.12 -0.89 9.67 71.24 0.69 -0.20 16 27 H 0.09 0.31 8.14 -2.39 -0.02 0.30 16 28 H 0.09 0.27 8.09 -2.39 -0.02 0.25 16 29 H 0.09 0.21 6.06 -2.39 -0.01 0.20 16 30 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.42 11.79 7.79 -92.71 -0.72 11.06 16 32 H 0.07 2.10 7.78 -2.39 -0.02 2.08 16 33 H 0.07 2.24 8.11 -2.39 -0.02 2.22 16 34 H 0.11 3.96 7.73 -2.91 -0.02 3.93 16 35 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 3.29 6.41 -2.39 -0.02 3.28 16 37 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.14 3.06 7.64 -2.91 -0.02 3.03 16 43 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.10 0.34 6.07 -2.39 -0.01 0.33 16 45 H 0.08 0.57 8.10 -2.39 -0.02 0.55 16 Total: -1.00 -71.31 369.98 2.34 -68.97 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.28 Total: 19.12 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 6.33 Total: 10.61 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -6.24 Total: -125.73 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.06 Total: -20.52 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.31 2.34 -68.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000986805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.661 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds