Wall clock time and date at job start Tue Mar 31 2020 10:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38355 * 119.45861 * 2 1 4 4 C 1.38352 * 119.29990 * 179.97438 * 3 2 1 5 5 C 1.40026 * 118.29157 * 0.02562 * 4 3 2 6 6 C 1.47839 * 120.56085 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00187 * 174.09711 * 6 5 4 8 8 N 1.34777 * 119.99964 * 354.09259 * 6 5 4 9 9 C 1.46496 * 120.00098 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.88777 * 31.11960 * 9 8 6 11 11 C 1.55159 * 111.00582 * 155.00154 * 9 8 6 12 12 C 1.54323 * 102.94186 * 153.57850 * 11 9 8 13 13 N 1.47023 * 107.27198 * 337.80579 * 12 11 9 14 14 C 1.36940 * 125.64455 * 178.99178 * 13 12 11 15 15 H 1.07999 * 119.99544 * 179.97438 * 14 13 12 16 16 C 1.38801 * 120.00246 * 359.97298 * 14 13 12 17 17 N 1.31620 * 120.00412 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00112 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46755 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47257 * 119.99559 * 18 16 14 21 21 H 1.48504 * 109.46798 * 240.00148 * 18 16 14 22 22 C 1.47421 * 108.70219 * 358.94202 * 13 12 11 23 23 C 1.39521 * 118.88031 * 359.97438 * 5 4 3 24 24 C 1.50699 * 119.71643 * 180.02562 * 23 5 4 25 25 C 1.53005 * 117.50044 * 178.23265 * 24 23 5 26 26 C 1.52991 * 117.50301 * 109.60907 * 24 23 5 27 27 N 1.31696 * 120.56374 * 359.75222 * 23 5 4 28 28 H 1.09004 * 109.46363 * 90.00302 * 1 2 3 29 29 H 1.08996 * 109.47420 * 330.00859 * 1 2 3 30 30 H 1.08993 * 109.47121 * 209.99894 * 1 2 3 31 31 H 1.08000 * 120.35068 * 359.95135 * 3 2 1 32 32 H 1.08000 * 120.85709 * 179.97438 * 4 3 2 33 33 H 0.97005 * 119.99792 * 0.02562 * 8 6 5 34 34 H 1.09003 * 110.71857 * 271.93506 * 11 9 8 35 35 H 1.08998 * 110.72125 * 35.20885 * 11 9 8 36 36 H 1.08997 * 109.88504 * 97.22596 * 12 11 9 37 37 H 1.09007 * 109.87965 * 218.38821 * 12 11 9 38 38 H 0.96996 * 120.00454 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.36450 * 265.29073 * 22 13 12 40 40 H 1.08997 * 110.36618 * 142.96702 * 22 13 12 41 41 H 1.09007 * 115.54599 * 323.93518 * 24 23 5 42 42 H 1.08999 * 117.49532 * 359.97438 * 25 24 23 43 43 H 1.08994 * 117.49939 * 145.01656 * 25 24 23 44 44 H 1.08999 * 117.50130 * 214.98175 * 26 24 23 45 45 H 1.09001 * 117.49755 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7083 -0.0966 0.0016 7 8 6.2711 -1.1686 0.1099 8 7 6.4309 1.0349 -0.1174 9 6 7.8945 0.9728 -0.1169 10 1 8.2439 0.0361 -0.5511 11 6 8.5032 2.1914 -0.8598 12 6 9.8917 2.3385 -0.2026 13 7 9.8232 1.6864 1.1133 14 6 10.8562 1.5801 2.0060 15 1 10.7037 1.0801 2.9511 16 6 12.0990 2.1148 1.6962 17 7 12.2847 2.7246 0.5447 18 14 13.5083 1.9691 2.9138 19 1 13.0437 1.2451 4.1242 20 1 14.6277 1.2207 2.2879 21 1 13.9733 3.3263 3.2973 22 6 8.4580 1.1671 1.3130 23 6 3.4716 -1.2043 0.0005 24 6 4.1627 -2.5435 0.0011 25 6 3.2813 -3.7934 0.0429 26 6 4.0816 -3.3799 1.2795 27 7 2.1558 -1.1486 0.0054 28 1 -0.3632 -0.0001 -1.0278 29 1 -0.3634 0.8900 0.5137 30 1 -0.3633 -0.8899 0.5138 31 1 1.6444 2.1382 -0.0008 32 1 4.1275 2.1264 0.0001 33 1 5.9817 1.8903 -0.2035 34 1 8.6009 1.9839 -1.9254 35 1 7.9010 3.0846 -0.6934 36 1 10.6471 1.8512 -0.8190 37 1 10.1342 3.3943 -0.0810 38 1 13.1533 3.0980 0.3281 39 1 7.8545 1.8885 1.8638 40 1 8.4882 0.2143 1.8415 41 1 5.0850 -2.5967 -0.5776 42 1 2.2015 -3.6470 0.0704 43 1 3.6234 -4.6692 -0.5083 44 1 4.9502 -3.9837 1.5420 45 1 3.5286 -2.9613 2.1205 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015422334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:20 Heat of formation + Delta-G solvation = 54.209051 kcal Electronic energy + Delta-G solvation = -25880.322897 eV Core-core repulsion = 22285.358087 eV Total energy + Delta-G solvation = -3594.964810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03395 -39.21543 -37.33399 -36.88787 -34.19946 -33.28465 -32.27160 -31.72843 -29.23819 -28.46336 -27.07136 -24.98794 -24.23010 -23.18598 -22.27403 -21.04099 -20.87806 -20.30671 -19.92990 -17.83032 -17.00038 -16.67546 -16.28366 -15.81890 -15.20956 -14.93080 -14.70100 -14.52645 -14.41046 -14.21273 -13.98439 -13.33197 -13.00501 -12.86790 -12.60906 -12.50436 -12.44412 -12.23430 -11.89812 -11.80796 -11.48701 -11.03581 -10.92580 -10.79070 -10.78397 -10.52131 -10.30543 -10.07881 -10.01364 -10.00589 -9.90142 -9.73290 -9.34562 -9.00287 -8.71698 -8.60483 -6.85309 -5.72521 -3.06130 0.45981 0.93386 2.83538 3.20624 3.40500 3.46340 3.48747 3.52946 3.82854 4.01876 4.32230 4.40048 4.49795 4.57901 4.76182 5.00130 5.00918 5.07254 5.13997 5.22729 5.24389 5.28174 5.42882 5.43541 5.58576 5.62119 5.68942 5.71127 5.72308 5.77462 5.85710 5.90305 6.13544 6.18734 6.24704 6.31766 6.38570 6.39875 6.56910 6.67730 6.94128 7.51793 7.55931 7.61145 7.72969 7.80562 8.23004 8.32737 9.20801 9.80625 10.45223 11.39494 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.002825 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.132356 B = 9910.813945 C =10623.186505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.151 3.849 3 C -0.188 4.188 4 C -0.037 4.037 5 C -0.185 4.185 6 C 0.560 3.440 7 O -0.523 6.523 8 N -0.711 5.711 9 C 0.128 3.872 10 H 0.099 0.901 11 C -0.150 4.150 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.226 4.226 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.913 3.087 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.130 3.870 23 C 0.224 3.776 24 C -0.112 4.112 25 C -0.169 4.169 26 C -0.150 4.150 27 N -0.488 5.488 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.395 0.605 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.252 0.748 39 H 0.019 0.981 40 H 0.044 0.956 41 H 0.144 0.856 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.867 -3.626 -3.893 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.013 3.987 3 C -0.208 4.208 4 C -0.063 4.063 5 C -0.190 4.190 6 C 0.346 3.654 7 O -0.400 6.400 8 N -0.361 5.361 9 C 0.023 3.977 10 H 0.117 0.883 11 C -0.189 4.189 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.354 4.354 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.743 3.257 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.002 3.998 23 C 0.085 3.915 24 C -0.130 4.130 25 C -0.206 4.206 26 C -0.188 4.188 27 N -0.197 5.197 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.162 0.838 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.685 -5.093 -3.791 24.521 hybrid contribution 1.078 1.493 0.564 1.926 sum -22.608 -3.599 -3.227 23.119 Atomic orbital electron populations 1.20772 0.88510 1.03721 1.03336 1.21489 0.97185 0.88196 0.91845 1.21873 0.94487 0.99506 1.04895 1.21778 0.94698 0.97304 0.92543 1.20782 0.94864 0.94521 1.08839 1.17954 0.85948 0.84519 0.76964 1.90744 1.72031 1.28173 1.49069 1.45932 1.07691 1.08679 1.73832 1.22354 0.76710 1.00252 0.98395 0.88282 1.23193 1.00119 0.96097 0.99461 1.21150 0.89733 0.97993 0.85712 1.44401 1.05818 1.65712 1.17137 1.19118 0.88306 1.31079 0.96886 0.90320 1.24804 0.97661 1.00553 0.97484 1.69952 1.22761 1.42520 1.21905 0.86022 0.82307 0.77232 0.80091 1.20469 1.21699 1.21765 1.21815 0.87487 0.97011 0.93463 1.20523 0.88097 0.93565 0.89272 1.21255 1.00876 0.86499 1.04373 1.22989 0.98975 0.97288 1.01381 1.22830 1.02492 1.02185 0.91317 1.67324 1.08948 1.29022 1.14425 0.90048 0.90440 0.90249 0.84209 0.84215 0.77071 0.91543 0.92102 0.93186 0.93555 0.93774 0.96360 0.93808 0.83833 0.87838 0.88768 0.88160 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 36.01 0.37 -0.29 16 2 C 0.15 1.46 6.78 -82.51 -0.56 0.90 16 3 C -0.19 -1.60 9.72 -39.50 -0.38 -1.98 16 4 C -0.04 -0.36 9.63 -38.87 -0.37 -0.74 16 5 C -0.18 -2.38 5.89 -104.82 -0.62 -3.00 16 6 C 0.56 8.52 7.74 -12.33 -0.10 8.42 16 7 O -0.52 -9.51 13.06 5.32 0.07 -9.44 16 8 N -0.71 -10.11 5.15 -52.67 -0.27 -10.38 16 9 C 0.13 2.28 3.42 -65.78 -0.23 2.06 16 10 H 0.10 1.95 7.54 -51.93 -0.39 1.56 16 11 C -0.15 -2.64 6.60 -24.90 -0.16 -2.81 16 12 C 0.18 4.26 5.37 -3.06 -0.02 4.25 16 13 N -0.60 -15.55 3.39 -170.08 -0.58 -16.13 16 14 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 15 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 16 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -27.07 10.31 55.49 0.57 -26.50 16 18 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.13 2.78 6.93 -2.53 -0.02 2.76 16 23 C 0.22 2.99 6.50 -82.17 -0.53 2.45 16 24 C -0.11 -1.49 4.61 -91.77 -0.42 -1.91 16 25 C -0.17 -1.87 10.02 -26.73 -0.27 -2.14 16 26 C -0.15 -1.82 10.23 -26.74 -0.27 -2.09 16 27 N -0.49 -5.91 9.19 -5.42 -0.05 -5.96 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.14 1.01 6.56 -52.49 -0.34 0.66 16 33 H 0.39 4.39 6.71 -40.82 -0.27 4.12 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.94 8.00 -51.93 -0.42 0.53 16 36 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 37 H 0.05 1.21 7.50 -51.92 -0.39 0.82 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.14 2.14 6.13 -51.93 -0.32 1.82 16 42 H 0.10 1.14 7.54 -51.93 -0.39 0.75 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -32.86 366.13 -10.28 -43.14 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.68 Total: 3.48 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -3.84 Total: -1.00 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.33 Total: -58.97 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.86 -10.28 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015422334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.345 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds