Wall clock time and date at job start Tue Mar 31 2020 10:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38355 * 119.45861 * 2 1 4 4 C 1.38352 * 119.29990 * 179.97438 * 3 2 1 5 5 C 1.40026 * 118.29157 * 0.02562 * 4 3 2 6 6 C 1.47839 * 120.56085 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00187 * 174.09711 * 6 5 4 8 8 N 1.34777 * 119.99964 * 354.09259 * 6 5 4 9 9 C 1.46496 * 120.00098 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.88777 * 31.11960 * 9 8 6 11 11 C 1.55159 * 111.00582 * 155.00154 * 9 8 6 12 12 C 1.54323 * 102.94186 * 153.57850 * 11 9 8 13 13 N 1.47023 * 107.27198 * 337.80579 * 12 11 9 14 14 C 1.36940 * 125.64455 * 178.99178 * 13 12 11 15 15 H 1.07999 * 119.99544 * 179.97438 * 14 13 12 16 16 C 1.38801 * 120.00246 * 359.97298 * 14 13 12 17 17 N 1.31620 * 120.00412 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00112 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46755 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47257 * 119.99559 * 18 16 14 21 21 H 1.48504 * 109.46798 * 240.00148 * 18 16 14 22 22 C 1.47421 * 108.70219 * 358.94202 * 13 12 11 23 23 C 1.39521 * 118.88031 * 359.97438 * 5 4 3 24 24 C 1.50699 * 119.71643 * 180.02562 * 23 5 4 25 25 C 1.53005 * 117.50044 * 178.23265 * 24 23 5 26 26 C 1.52991 * 117.50301 * 109.60907 * 24 23 5 27 27 N 1.31696 * 120.56374 * 359.75222 * 23 5 4 28 28 H 1.09004 * 109.46363 * 90.00302 * 1 2 3 29 29 H 1.08996 * 109.47420 * 330.00859 * 1 2 3 30 30 H 1.08993 * 109.47121 * 209.99894 * 1 2 3 31 31 H 1.08000 * 120.35068 * 359.95135 * 3 2 1 32 32 H 1.08000 * 120.85709 * 179.97438 * 4 3 2 33 33 H 0.97005 * 119.99792 * 0.02562 * 8 6 5 34 34 H 1.09003 * 110.71857 * 271.93506 * 11 9 8 35 35 H 1.08998 * 110.72125 * 35.20885 * 11 9 8 36 36 H 1.08997 * 109.88504 * 97.22596 * 12 11 9 37 37 H 1.09007 * 109.87965 * 218.38821 * 12 11 9 38 38 H 0.96996 * 120.00454 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.36450 * 265.29073 * 22 13 12 40 40 H 1.08997 * 110.36618 * 142.96702 * 22 13 12 41 41 H 1.09007 * 115.54599 * 323.93518 * 24 23 5 42 42 H 1.08999 * 117.49532 * 359.97438 * 25 24 23 43 43 H 1.08994 * 117.49939 * 145.01656 * 25 24 23 44 44 H 1.08999 * 117.50130 * 214.98175 * 26 24 23 45 45 H 1.09001 * 117.49755 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7083 -0.0966 0.0016 7 8 6.2711 -1.1686 0.1099 8 7 6.4309 1.0349 -0.1174 9 6 7.8945 0.9728 -0.1169 10 1 8.2439 0.0361 -0.5511 11 6 8.5032 2.1914 -0.8598 12 6 9.8917 2.3385 -0.2026 13 7 9.8232 1.6864 1.1133 14 6 10.8562 1.5801 2.0060 15 1 10.7037 1.0801 2.9511 16 6 12.0990 2.1148 1.6962 17 7 12.2847 2.7246 0.5447 18 14 13.5083 1.9691 2.9138 19 1 13.0437 1.2451 4.1242 20 1 14.6277 1.2207 2.2879 21 1 13.9733 3.3263 3.2973 22 6 8.4580 1.1671 1.3130 23 6 3.4716 -1.2043 0.0005 24 6 4.1627 -2.5435 0.0011 25 6 3.2813 -3.7934 0.0429 26 6 4.0816 -3.3799 1.2795 27 7 2.1558 -1.1486 0.0054 28 1 -0.3632 -0.0001 -1.0278 29 1 -0.3634 0.8900 0.5137 30 1 -0.3633 -0.8899 0.5138 31 1 1.6444 2.1382 -0.0008 32 1 4.1275 2.1264 0.0001 33 1 5.9817 1.8903 -0.2035 34 1 8.6009 1.9839 -1.9254 35 1 7.9010 3.0846 -0.6934 36 1 10.6471 1.8512 -0.8190 37 1 10.1342 3.3943 -0.0810 38 1 13.1533 3.0980 0.3281 39 1 7.8545 1.8885 1.8638 40 1 8.4882 0.2143 1.8415 41 1 5.0850 -2.5967 -0.5776 42 1 2.2015 -3.6470 0.0704 43 1 3.6234 -4.6692 -0.5083 44 1 4.9502 -3.9837 1.5420 45 1 3.5286 -2.9613 2.1205 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015422334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:19 Heat of formation + Delta-G solvation = 33.712500 kcal Electronic energy + Delta-G solvation = -25881.211694 eV Core-core repulsion = 22285.358087 eV Total energy + Delta-G solvation = -3595.853607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95066 -40.42183 -38.85635 -37.89544 -35.68929 -34.39303 -33.45612 -32.97258 -31.02719 -29.41576 -28.55437 -26.60404 -25.48716 -24.02136 -23.23129 -22.31173 -22.15006 -21.68850 -21.40752 -19.19637 -18.56666 -17.83230 -17.24290 -17.02772 -16.67460 -16.18837 -15.95532 -15.85675 -15.62692 -15.24974 -15.03362 -14.70164 -14.26715 -14.04291 -13.91613 -13.70778 -13.57928 -13.33028 -13.01355 -12.96366 -12.87206 -12.77005 -12.41703 -12.37993 -12.12227 -12.00872 -11.83834 -11.65318 -11.60432 -11.44295 -10.95365 -10.83837 -10.74161 -10.37375 -10.15575 -9.70773 -8.93515 -7.88131 -5.24238 -0.39259 0.17328 1.44767 1.46000 1.56373 1.79960 2.00025 2.48662 2.62337 3.01894 3.12767 3.30680 3.49117 3.63930 3.66038 3.72709 3.86519 3.98888 4.03486 4.11744 4.17648 4.19754 4.23972 4.38287 4.57213 4.64933 4.69545 4.73569 4.75327 4.82167 4.86002 4.95586 4.96781 4.98731 5.05049 5.09427 5.17674 5.26014 5.34290 5.41170 5.51006 5.62895 5.65017 5.72559 6.17079 6.50034 6.91261 7.07777 7.18292 7.72973 8.36072 9.22131 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.002825 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.132356 B = 9910.813945 C =10623.186505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.178 4.178 4 C -0.033 4.033 5 C -0.207 4.207 6 C 0.559 3.441 7 O -0.561 6.561 8 N -0.696 5.696 9 C 0.148 3.852 10 H 0.078 0.922 11 C -0.128 4.128 12 C 0.184 3.816 13 N -0.626 5.626 14 C -0.245 4.245 15 H 0.077 0.923 16 C -0.063 4.063 17 N -0.948 5.948 18 Si 0.979 3.021 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.129 3.871 23 C 0.206 3.794 24 C -0.129 4.129 25 C -0.149 4.149 26 C -0.155 4.155 27 N -0.505 5.505 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.414 0.586 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.013 0.987 37 H 0.018 0.982 38 H 0.249 0.751 39 H 0.032 0.968 40 H 0.024 0.976 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.711 -2.243 -3.916 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.006 3.994 3 C -0.197 4.197 4 C -0.058 4.058 5 C -0.212 4.212 6 C 0.347 3.653 7 O -0.440 6.440 8 N -0.348 5.348 9 C 0.042 3.958 10 H 0.096 0.904 11 C -0.166 4.166 12 C 0.059 3.941 13 N -0.353 5.353 14 C -0.374 4.374 15 H 0.095 0.905 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.807 3.193 19 H -0.194 1.194 20 H -0.218 1.218 21 H -0.214 1.214 22 C 0.002 3.998 23 C 0.068 3.932 24 C -0.148 4.148 25 C -0.187 4.187 26 C -0.192 4.192 27 N -0.215 5.215 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.198 0.802 32 H 0.186 0.814 33 H 0.252 0.748 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.031 0.969 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.138 0.862 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -26.585 -3.695 -3.814 27.111 hybrid contribution 1.843 1.056 0.584 2.203 sum -24.743 -2.639 -3.230 25.092 Atomic orbital electron populations 1.20892 0.85964 1.04803 1.04440 1.22214 0.98922 0.88042 0.90238 1.22313 0.93990 1.00652 1.02757 1.22127 0.95598 0.96934 0.91181 1.20605 0.93031 0.96009 1.11584 1.18384 0.87132 0.83911 0.75832 1.90736 1.73035 1.29631 1.50641 1.45622 1.05855 1.09647 1.73712 1.21818 0.78864 0.99457 0.95700 0.90429 1.23007 0.96488 0.97186 0.99957 1.20946 0.92662 0.95544 0.84965 1.44682 1.06948 1.66164 1.17473 1.19441 0.89530 1.30952 0.97480 0.90531 1.25634 1.00018 1.00593 0.99343 1.70157 1.22965 1.43204 1.23397 0.85005 0.78911 0.77139 0.78238 1.19354 1.21784 1.21435 1.21921 0.86051 0.96025 0.95770 1.20523 0.88880 0.93486 0.90330 1.21154 1.00830 0.87988 1.04780 1.23007 0.98764 0.96655 1.00224 1.22824 1.02764 1.02270 0.91378 1.67347 1.08249 1.30617 1.15332 0.88742 0.87800 0.90766 0.80239 0.81416 0.74798 0.89268 0.88837 0.96851 0.96344 0.94190 0.95024 0.95723 0.86169 0.87525 0.87471 0.88346 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.16 71.24 0.72 -0.18 16 2 C 0.14 2.34 6.78 42.58 0.29 2.63 16 3 C -0.18 -2.28 9.72 22.32 0.22 -2.06 16 4 C -0.03 -0.53 9.63 22.73 0.22 -0.31 16 5 C -0.21 -5.10 5.89 -19.99 -0.12 -5.22 16 6 C 0.56 16.85 7.74 86.78 0.67 17.52 16 7 O -0.56 -21.17 13.06 -3.88 -0.05 -21.22 16 8 N -0.70 -18.68 5.15 -438.83 -2.26 -20.94 16 9 C 0.15 5.21 3.42 46.39 0.16 5.37 16 10 H 0.08 3.12 7.54 -2.39 -0.02 3.10 16 11 C -0.13 -4.31 6.60 31.78 0.21 -4.10 16 12 C 0.18 8.94 5.37 86.73 0.47 9.40 16 13 N -0.63 -32.97 3.39 -692.00 -2.35 -35.32 16 14 C -0.25 -14.18 10.28 84.03 0.86 -13.32 16 15 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 16 C -0.06 -3.63 5.49 84.86 0.47 -3.16 16 17 N -0.95 -57.13 10.31 21.65 0.22 -56.91 16 18 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 C 0.13 5.57 6.93 86.86 0.60 6.17 16 23 C 0.21 5.42 6.50 42.89 0.28 5.70 16 24 C -0.13 -3.55 4.61 -11.54 -0.05 -3.60 16 25 C -0.15 -3.30 10.02 30.59 0.31 -3.00 16 26 C -0.15 -3.86 10.23 30.59 0.31 -3.54 16 27 N -0.51 -11.56 9.19 -171.05 -1.57 -13.13 16 28 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.10 0.38 8.07 -2.39 -0.02 0.36 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 32 H 0.17 1.65 6.56 -2.91 -0.02 1.63 16 33 H 0.41 7.84 6.71 -92.70 -0.62 7.22 16 34 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.09 2.58 8.00 -2.39 -0.02 2.57 16 36 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 37 H 0.02 0.98 7.50 -2.38 -0.02 0.96 16 38 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.12 3.84 6.13 -2.38 -0.01 3.83 16 42 H 0.11 2.29 7.54 -2.39 -0.02 2.27 16 43 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -75.55 366.13 2.01 -73.54 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.38 Total: 17.10 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 5.61 Total: 8.31 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -5.96 Total: -126.30 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -75.55 2.01 -73.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015422334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.252 kcal (2) G-P(sol) polarization free energy of solvation -75.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds