Wall clock time and date at job start Tue Mar 31 2020 11:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38603 * 119.55435 * 2 1 4 4 C 1.38581 * 119.35651 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48779 * 0.02562 * 4 3 2 6 6 C 1.39270 * 119.06123 * 0.02562 * 5 4 3 7 7 C 1.48168 * 119.72628 * 180.02562 * 6 5 4 8 8 O 1.21517 * 119.99520 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00038 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99605 * 179.97438 * 9 7 6 11 11 H 1.09001 * 115.55120 * 350.69099 * 10 9 7 12 12 C 1.53030 * 117.49691 * 136.41412 * 10 9 7 13 13 C 1.52814 * 117.50298 * 204.99800 * 10 9 7 14 14 C 1.53182 * 117.71650 * 144.89938 * 13 10 9 15 15 C 1.53350 * 108.76999 * 158.89056 * 14 13 10 16 16 N 1.46839 * 108.81619 * 51.31072 * 15 14 13 17 17 C 1.36929 * 120.38520 * 123.12055 * 16 15 14 18 18 H 1.08001 * 120.00773 * 208.88676 * 17 16 15 19 19 C 1.38818 * 120.00072 * 28.88357 * 17 16 15 20 20 N 1.31625 * 119.99712 * 17.85930 * 19 17 16 21 21 Si 1.86798 * 120.00388 * 197.85184 * 19 17 16 22 22 H 1.48501 * 109.46867 * 59.99937 * 21 19 17 23 23 H 1.48501 * 109.47124 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46963 * 300.00021 * 21 19 17 25 25 C 1.46846 * 119.23163 * 303.09700 * 16 15 14 26 26 C 1.53189 * 117.71183 * 0.14265 * 13 10 9 27 27 N 1.31501 * 119.54895 * 179.73404 * 2 1 3 28 28 H 1.09000 * 109.46920 * 89.99532 * 1 2 3 29 29 H 1.09000 * 109.46928 * 329.99583 * 1 2 3 30 30 H 1.08996 * 109.47195 * 209.99803 * 1 2 3 31 31 H 1.08009 * 120.32177 * 359.96328 * 3 2 1 32 32 H 1.07999 * 120.75725 * 179.97438 * 4 3 2 33 33 H 1.07994 * 120.47280 * 180.02562 * 5 4 3 34 34 H 0.96992 * 120.00114 * 359.97438 * 9 7 6 35 35 H 1.09006 * 117.49922 * 214.95087 * 12 10 9 36 36 H 1.09001 * 117.51098 * 0.02562 * 12 10 9 37 37 H 1.08995 * 109.58580 * 278.67948 * 14 13 10 38 38 H 1.09002 * 109.58300 * 39.10981 * 14 13 10 39 39 H 1.09002 * 109.57920 * 291.51178 * 15 14 13 40 40 H 1.09003 * 109.57705 * 171.11324 * 15 14 13 41 41 H 0.96997 * 119.99948 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.58630 * 297.10658 * 25 16 15 43 43 H 1.09004 * 109.57989 * 176.70074 * 25 16 15 44 44 H 1.09000 * 109.58709 * 320.89967 * 26 13 10 45 45 H 1.08999 * 109.58752 * 81.33305 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0198 0.0005 6 6 3.4821 -1.1925 -0.0006 7 6 4.1691 -2.5052 0.0000 8 8 5.3832 -2.5555 0.0009 9 7 3.4475 -3.6435 -0.0006 10 6 4.1269 -4.9415 -0.0006 11 1 5.2048 -4.9079 -0.1593 12 6 3.5831 -6.0236 0.9348 13 6 3.3660 -6.1363 -0.5740 14 6 4.1711 -7.1969 -1.3312 15 6 3.3694 -8.5040 -1.3510 16 7 2.0126 -8.2201 -1.8355 17 6 1.5160 -8.8776 -2.9290 18 1 0.7809 -8.3991 -3.5592 19 6 1.9572 -10.1595 -3.2277 20 7 2.5640 -10.8779 -2.3068 21 14 1.6897 -10.8649 -4.9366 22 1 2.3729 -10.0077 -5.9384 23 1 2.2479 -12.2396 -4.9976 24 1 0.2349 -10.9083 -5.2320 25 6 1.1944 -7.2231 -1.1333 26 6 1.9519 -5.8900 -1.1092 27 7 2.1555 -1.1440 0.0053 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5138 31 1 1.6486 2.1399 -0.0006 32 1 4.1319 2.1271 0.0001 33 1 5.3126 -0.0610 0.0013 34 1 2.4784 -3.6033 -0.0010 35 1 4.3033 -6.7024 1.3917 36 1 2.7196 -5.7701 1.5499 37 1 4.3479 -6.8610 -2.3529 38 1 5.1241 -7.3603 -0.8279 39 1 3.3186 -8.9166 -0.3434 40 1 3.8529 -9.2189 -2.0167 41 1 2.8726 -11.7734 -2.5156 42 1 1.0089 -7.5563 -0.1122 43 1 0.2464 -7.0951 -1.6558 44 1 1.4325 -5.1862 -0.4588 45 1 2.0090 -5.4838 -2.1191 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016514337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:00 Heat of formation + Delta-G solvation = 42.941193 kcal Electronic energy + Delta-G solvation = -25818.250120 eV Core-core repulsion = 22222.796699 eV Total energy + Delta-G solvation = -3595.453421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.90023 -39.54796 -38.22772 -35.47464 -33.50665 -33.31941 -32.41958 -31.46174 -29.95734 -28.31124 -28.03615 -25.18488 -24.30752 -22.73442 -22.43009 -21.83582 -20.92293 -20.33996 -18.33668 -18.01645 -16.87568 -16.54275 -16.13994 -15.80561 -15.36808 -14.97943 -14.67562 -14.32934 -14.03126 -14.02278 -13.50741 -13.47263 -13.31893 -13.08319 -12.74645 -12.63308 -12.57765 -12.27983 -12.19809 -11.61518 -11.56412 -11.28926 -10.94428 -10.69465 -10.46773 -10.39517 -10.30187 -10.29070 -9.92411 -9.82991 -9.65547 -9.58329 -9.33142 -9.30883 -8.41867 -8.41547 -6.60972 -5.76096 -3.19074 0.35883 0.86027 2.56153 2.98519 3.40245 3.46126 3.47765 3.56724 3.76291 4.23424 4.30581 4.49286 4.52366 4.61967 4.72312 5.01000 5.05642 5.17407 5.18748 5.20045 5.24377 5.26467 5.41894 5.54673 5.63936 5.67543 5.70811 5.75562 5.90477 6.09511 6.12680 6.14219 6.24380 6.33710 6.49132 6.59500 6.65463 6.68978 6.73804 6.87386 7.01097 7.34057 7.40122 7.62636 7.70166 7.82144 8.14734 8.49530 9.24793 9.88490 10.45328 11.31647 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.002798 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.960960 B =10005.964360 C =10648.804179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.127 3.873 3 C -0.153 4.153 4 C -0.079 4.079 5 C -0.119 4.119 6 C 0.088 3.912 7 C 0.571 3.429 8 O -0.537 6.537 9 N -0.673 5.673 10 C 0.064 3.936 11 H 0.133 0.867 12 C -0.180 4.180 13 C -0.094 4.094 14 C -0.106 4.106 15 C 0.173 3.827 16 N -0.589 5.589 17 C -0.254 4.254 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.151 3.849 26 C -0.098 4.098 27 N -0.459 5.459 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.411 0.589 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.018 0.982 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 23.812 6.907 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.013 4.013 3 C -0.173 4.173 4 C -0.104 4.104 5 C -0.140 4.140 6 C -0.050 4.050 7 C 0.356 3.644 8 O -0.413 6.413 9 N -0.321 5.321 10 C -0.041 4.041 11 H 0.151 0.849 12 C -0.219 4.219 13 C -0.096 4.096 14 C -0.145 4.145 15 C 0.047 3.953 16 N -0.312 5.312 17 C -0.383 4.383 18 H 0.081 0.919 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.024 3.976 26 C -0.137 4.137 27 N -0.172 5.172 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.249 0.751 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.294 22.765 6.899 23.789 hybrid contribution -0.072 0.484 -0.777 0.918 sum -0.365 23.249 6.123 24.044 Atomic orbital electron populations 1.20759 0.88167 1.03827 1.03540 1.21353 0.97270 0.87879 0.94796 1.22197 0.95050 0.99456 1.00584 1.21626 0.94433 0.98303 0.96065 1.22123 1.02383 0.91764 0.97762 1.21167 0.89628 0.94200 1.00006 1.17831 0.86512 0.83179 0.76899 1.90772 1.12995 1.86977 1.50593 1.45254 1.10788 1.04305 1.71798 1.21987 0.97322 0.78623 1.06214 0.84906 1.23536 1.03307 1.01168 0.93857 1.21970 0.97111 0.96135 0.94356 1.21888 0.96973 0.96983 0.98659 1.20764 0.84552 0.91831 0.98123 1.43966 1.10635 1.44409 1.32142 1.19148 1.23015 0.95191 1.00981 0.91864 1.25044 1.01240 0.95497 0.97815 1.70028 1.43451 1.09727 1.31372 0.86392 0.77929 0.77901 0.84679 1.21034 1.21654 1.20914 1.20836 0.93331 0.88027 0.95424 1.21637 0.92895 0.99376 0.99832 1.67404 1.08584 1.30222 1.11003 0.90007 0.90519 0.90040 0.84258 0.83991 0.83368 0.75125 0.88197 0.88969 0.92101 0.92977 0.96339 0.89170 0.93592 0.96296 0.92742 0.93440 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.17 36.00 0.37 -0.29 16 2 C 0.13 1.15 6.78 -82.60 -0.56 0.59 16 3 C -0.15 -1.09 9.75 -39.32 -0.38 -1.47 16 4 C -0.08 -0.59 10.17 -39.31 -0.40 -0.98 16 5 C -0.12 -1.23 9.63 -39.05 -0.38 -1.61 16 6 C 0.09 1.12 6.75 -83.01 -0.56 0.56 16 7 C 0.57 8.58 7.81 -12.18 -0.10 8.49 16 8 O -0.54 -9.36 15.89 5.35 0.09 -9.28 16 9 N -0.67 -9.77 5.33 -54.72 -0.29 -10.06 16 10 C 0.06 0.99 6.14 -68.01 -0.42 0.58 16 11 H 0.13 2.18 7.40 -51.93 -0.38 1.79 16 12 C -0.18 -2.73 9.86 -26.80 -0.26 -3.00 16 13 C -0.09 -1.62 1.94 -154.49 -0.30 -1.92 16 14 C -0.11 -2.05 5.83 -26.46 -0.15 -2.21 16 15 C 0.17 4.13 5.40 -3.68 -0.02 4.11 16 16 N -0.59 -14.76 2.94 -172.26 -0.51 -15.27 16 17 C -0.25 -6.98 9.54 -15.06 -0.14 -7.12 16 18 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 19 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 20 N -0.90 -26.19 11.23 55.49 0.62 -25.57 16 21 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.15 3.15 6.51 -3.67 -0.02 3.12 16 26 C -0.10 -1.71 5.37 -26.45 -0.14 -1.85 16 27 N -0.46 -5.40 9.45 -6.06 -0.06 -5.46 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.15 1.46 7.64 -52.49 -0.40 1.06 16 34 H 0.41 5.57 6.45 -40.82 -0.26 5.31 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 2.41 5.93 -51.93 -0.31 2.10 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 1.12 7.92 -51.93 -0.41 0.70 16 44 H 0.05 0.71 6.75 -51.93 -0.35 0.36 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -32.03 368.01 -9.92 -41.95 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.74 Total: 4.41 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.56 Total: -3.01 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.23 Total: -56.35 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.03 -9.92 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016514337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.891 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds