Wall clock time and date at job start Tue Mar 31 2020 11:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38603 * 119.55435 * 2 1 4 4 C 1.38581 * 119.35651 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48779 * 0.02562 * 4 3 2 6 6 C 1.39270 * 119.06123 * 0.02562 * 5 4 3 7 7 C 1.48168 * 119.72628 * 180.02562 * 6 5 4 8 8 O 1.21517 * 119.99520 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00038 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99605 * 179.97438 * 9 7 6 11 11 H 1.09001 * 115.55120 * 350.69099 * 10 9 7 12 12 C 1.53030 * 117.49691 * 136.41412 * 10 9 7 13 13 C 1.52814 * 117.50298 * 204.99800 * 10 9 7 14 14 C 1.53182 * 117.71650 * 144.89938 * 13 10 9 15 15 C 1.53350 * 108.76999 * 158.89056 * 14 13 10 16 16 N 1.46839 * 108.81619 * 51.31072 * 15 14 13 17 17 C 1.36929 * 120.38520 * 123.12055 * 16 15 14 18 18 H 1.08001 * 120.00773 * 208.88676 * 17 16 15 19 19 C 1.38818 * 120.00072 * 28.88357 * 17 16 15 20 20 N 1.31625 * 119.99712 * 17.85930 * 19 17 16 21 21 Si 1.86798 * 120.00388 * 197.85184 * 19 17 16 22 22 H 1.48501 * 109.46867 * 59.99937 * 21 19 17 23 23 H 1.48501 * 109.47124 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46963 * 300.00021 * 21 19 17 25 25 C 1.46846 * 119.23163 * 303.09700 * 16 15 14 26 26 C 1.53189 * 117.71183 * 0.14265 * 13 10 9 27 27 N 1.31501 * 119.54895 * 179.73404 * 2 1 3 28 28 H 1.09000 * 109.46920 * 89.99532 * 1 2 3 29 29 H 1.09000 * 109.46928 * 329.99583 * 1 2 3 30 30 H 1.08996 * 109.47195 * 209.99803 * 1 2 3 31 31 H 1.08009 * 120.32177 * 359.96328 * 3 2 1 32 32 H 1.07999 * 120.75725 * 179.97438 * 4 3 2 33 33 H 1.07994 * 120.47280 * 180.02562 * 5 4 3 34 34 H 0.96992 * 120.00114 * 359.97438 * 9 7 6 35 35 H 1.09006 * 117.49922 * 214.95087 * 12 10 9 36 36 H 1.09001 * 117.51098 * 0.02562 * 12 10 9 37 37 H 1.08995 * 109.58580 * 278.67948 * 14 13 10 38 38 H 1.09002 * 109.58300 * 39.10981 * 14 13 10 39 39 H 1.09002 * 109.57920 * 291.51178 * 15 14 13 40 40 H 1.09003 * 109.57705 * 171.11324 * 15 14 13 41 41 H 0.96997 * 119.99948 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.58630 * 297.10658 * 25 16 15 43 43 H 1.09004 * 109.57989 * 176.70074 * 25 16 15 44 44 H 1.09000 * 109.58709 * 320.89967 * 26 13 10 45 45 H 1.08999 * 109.58752 * 81.33305 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0198 0.0005 6 6 3.4821 -1.1925 -0.0006 7 6 4.1691 -2.5052 0.0000 8 8 5.3832 -2.5555 0.0009 9 7 3.4475 -3.6435 -0.0006 10 6 4.1269 -4.9415 -0.0006 11 1 5.2048 -4.9079 -0.1593 12 6 3.5831 -6.0236 0.9348 13 6 3.3660 -6.1363 -0.5740 14 6 4.1711 -7.1969 -1.3312 15 6 3.3694 -8.5040 -1.3510 16 7 2.0126 -8.2201 -1.8355 17 6 1.5160 -8.8776 -2.9290 18 1 0.7809 -8.3991 -3.5592 19 6 1.9572 -10.1595 -3.2277 20 7 2.5640 -10.8779 -2.3068 21 14 1.6897 -10.8649 -4.9366 22 1 2.3729 -10.0077 -5.9384 23 1 2.2479 -12.2396 -4.9976 24 1 0.2349 -10.9083 -5.2320 25 6 1.1944 -7.2231 -1.1333 26 6 1.9519 -5.8900 -1.1092 27 7 2.1555 -1.1440 0.0053 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5138 31 1 1.6486 2.1399 -0.0006 32 1 4.1319 2.1271 0.0001 33 1 5.3126 -0.0610 0.0013 34 1 2.4784 -3.6033 -0.0010 35 1 4.3033 -6.7024 1.3917 36 1 2.7196 -5.7701 1.5499 37 1 4.3479 -6.8610 -2.3529 38 1 5.1241 -7.3603 -0.8279 39 1 3.3186 -8.9166 -0.3434 40 1 3.8529 -9.2189 -2.0167 41 1 2.8726 -11.7734 -2.5156 42 1 1.0089 -7.5563 -0.1122 43 1 0.2464 -7.0951 -1.6558 44 1 1.4325 -5.1862 -0.4588 45 1 2.0090 -5.4838 -2.1191 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016514337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:59 Heat of formation + Delta-G solvation = 23.446705 kcal Electronic energy + Delta-G solvation = -25819.095464 eV Core-core repulsion = 22222.796699 eV Total energy + Delta-G solvation = -3596.298765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76430 -40.69965 -39.53308 -37.16445 -34.70937 -33.98306 -33.67460 -32.94277 -31.65064 -29.98237 -28.68608 -26.29902 -25.98094 -24.08500 -23.52698 -22.98642 -22.36065 -21.59088 -19.84032 -19.19337 -18.28828 -17.69349 -17.11853 -16.75179 -16.73555 -16.34686 -15.95475 -15.61594 -15.30560 -15.14546 -15.03366 -14.83669 -14.64683 -14.19679 -14.02633 -13.80410 -13.36291 -13.23368 -13.11430 -13.07911 -12.90150 -12.88111 -12.57665 -12.56339 -12.29404 -12.04137 -11.80013 -11.52988 -11.41125 -11.26120 -10.94241 -10.80221 -10.54638 -10.47140 -10.05761 -9.69029 -8.62602 -7.86043 -5.32227 -0.40183 0.22275 1.46383 1.49214 1.55832 1.58776 1.90886 2.51835 2.74221 2.95356 2.97731 3.28542 3.60499 3.67576 3.77449 3.83910 3.85376 3.95905 4.01183 4.08629 4.10764 4.43025 4.50583 4.57493 4.60478 4.71249 4.77738 4.82642 4.84409 4.86908 4.89923 5.00969 5.06244 5.10711 5.12970 5.15627 5.22808 5.28962 5.35848 5.42400 5.53641 5.65314 5.65645 5.76959 6.32720 6.41324 6.77762 7.04728 7.16516 7.88571 8.39987 9.19064 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.002798 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.960960 B =10005.964360 C =10648.804179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.112 3.888 3 C -0.137 4.137 4 C -0.073 4.073 5 C -0.128 4.128 6 C 0.057 3.943 7 C 0.568 3.432 8 O -0.570 6.570 9 N -0.670 5.670 10 C 0.078 3.922 11 H 0.125 0.875 12 C -0.165 4.165 13 C -0.113 4.113 14 C -0.093 4.093 15 C 0.181 3.819 16 N -0.608 5.608 17 C -0.265 4.265 18 H 0.064 0.936 19 C -0.049 4.049 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.274 1.274 25 C 0.147 3.853 26 C -0.083 4.083 27 N -0.481 5.481 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.145 0.855 34 H 0.416 0.584 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.002 0.998 40 H 0.055 0.945 41 H 0.250 0.750 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 27.137 7.255 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.029 4.029 3 C -0.157 4.157 4 C -0.098 4.098 5 C -0.149 4.149 6 C -0.080 4.080 7 C 0.355 3.645 8 O -0.449 6.449 9 N -0.318 5.318 10 C -0.028 4.028 11 H 0.143 0.857 12 C -0.203 4.203 13 C -0.114 4.114 14 C -0.133 4.133 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.396 4.396 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.200 1.200 25 C 0.022 3.978 26 C -0.122 4.122 27 N -0.194 5.194 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.197 0.803 32 H 0.196 0.804 33 H 0.162 0.838 34 H 0.255 0.745 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.431 26.118 7.255 27.145 hybrid contribution 0.208 -0.428 -0.848 0.973 sum -1.224 25.689 6.407 26.504 Atomic orbital electron populations 1.20847 0.86307 1.04759 1.04166 1.21954 0.98614 0.87954 0.94388 1.22669 0.95029 1.00278 0.97701 1.22050 0.94944 0.98368 0.94465 1.22259 1.02363 0.92383 0.97943 1.20881 0.90425 0.93385 1.03331 1.18296 0.86275 0.84142 0.75790 1.90738 1.14392 1.87612 1.52175 1.45205 1.10969 1.03878 1.71773 1.21768 0.96752 0.78867 1.05393 0.85704 1.23615 1.03765 1.00472 0.92498 1.21816 0.96863 0.96885 0.95860 1.21643 0.97439 0.95447 0.98739 1.20535 0.84711 0.93241 0.95982 1.44224 1.11577 1.45036 1.32275 1.19473 1.22772 0.95430 1.01884 0.91832 1.25785 1.01610 0.95961 1.01122 1.70176 1.44797 1.09799 1.33070 0.85382 0.78070 0.76795 0.80453 1.20659 1.21951 1.20003 1.20972 0.93422 0.88635 0.94788 1.21434 0.92929 0.97740 1.00080 1.67325 1.08157 1.32010 1.11951 0.89423 0.87731 0.91012 0.80301 0.80428 0.83756 0.74513 0.87488 0.87487 0.93395 0.91193 0.98038 0.92654 0.94074 0.96319 0.92714 0.90362 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.17 71.23 0.72 -0.26 16 2 C 0.11 1.73 6.78 42.69 0.29 2.02 16 3 C -0.14 -1.40 9.75 22.44 0.22 -1.18 16 4 C -0.07 -0.84 10.17 22.45 0.23 -0.62 16 5 C -0.13 -2.49 9.63 22.61 0.22 -2.28 16 6 C 0.06 1.40 6.75 41.89 0.28 1.68 16 7 C 0.57 17.09 7.81 86.88 0.68 17.77 16 8 O -0.57 -20.20 15.89 -3.77 -0.06 -20.26 16 9 N -0.67 -18.99 5.33 -445.33 -2.38 -21.37 16 10 C 0.08 2.37 6.14 44.94 0.28 2.65 16 11 H 0.13 4.06 7.40 -2.39 -0.02 4.04 16 12 C -0.17 -4.76 9.86 30.55 0.30 -4.46 16 13 C -0.11 -3.80 1.94 -52.17 -0.10 -3.90 16 14 C -0.09 -3.68 5.83 30.77 0.18 -3.50 16 15 C 0.18 8.92 5.40 86.43 0.47 9.38 16 16 N -0.61 -31.09 2.94 -698.90 -2.05 -33.14 16 17 C -0.27 -14.86 9.54 84.04 0.80 -14.06 16 18 H 0.06 3.48 7.89 -2.91 -0.02 3.45 16 19 C -0.05 -2.79 4.88 84.86 0.41 -2.38 16 20 N -0.93 -55.86 11.23 21.65 0.24 -55.62 16 21 Si 0.96 45.53 29.59 68.60 2.03 47.56 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.15 6.15 6.51 86.43 0.56 6.71 16 26 C -0.08 -2.81 5.37 30.78 0.17 -2.65 16 27 N -0.48 -10.69 9.45 -173.08 -1.64 -12.33 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.39 8.08 -2.39 -0.02 0.37 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 32 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.14 2.80 7.64 -2.91 -0.02 2.78 16 34 H 0.42 10.82 6.45 -92.71 -0.60 10.22 16 35 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 36 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 39 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.06 3.09 5.93 -2.39 -0.01 3.08 16 41 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 2.24 7.92 -2.39 -0.02 2.22 16 44 H 0.08 2.18 6.75 -2.39 -0.02 2.16 16 45 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -72.09 368.01 2.26 -69.83 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.40 Total: 20.40 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.71 Total: 4.92 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -5.82 Total: -122.46 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -72.09 2.26 -69.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016514337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.279 kcal (2) G-P(sol) polarization free energy of solvation -72.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds