Wall clock time and date at job start Tue Mar 31 2020 11:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38350 * 120.35466 * 2 1 4 4 N 1.31927 * 121.08418 * 179.70168 * 3 2 1 5 5 C 1.31692 * 121.87319 * 0.58668 * 4 3 2 6 6 C 1.39518 * 120.57203 * 359.70756 * 5 4 3 7 7 C 1.47843 * 120.56018 * 179.97438 * 6 5 4 8 8 O 1.21549 * 119.99840 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99850 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99828 * 180.02562 * 9 7 6 11 11 H 1.09006 * 115.55505 * 350.70626 * 10 9 7 12 12 C 1.53031 * 117.50080 * 136.39441 * 10 9 7 13 13 C 1.52814 * 117.50504 * 204.97714 * 10 9 7 14 14 C 1.53181 * 117.71473 * 144.90045 * 13 10 9 15 15 C 1.53355 * 108.77119 * 158.89317 * 14 13 10 16 16 N 1.46839 * 108.81614 * 51.30629 * 15 14 13 17 17 C 1.36928 * 120.38636 * 123.12422 * 16 15 14 18 18 H 1.08003 * 120.00242 * 208.88551 * 17 16 15 19 19 C 1.38811 * 120.00174 * 28.88410 * 17 16 15 20 20 N 1.31623 * 119.99932 * 17.85156 * 19 17 16 21 21 Si 1.86795 * 120.00324 * 197.85523 * 19 17 16 22 22 H 1.48501 * 109.47150 * 90.00024 * 21 19 17 23 23 H 1.48508 * 109.47377 * 210.00021 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99713 * 21 19 17 25 25 C 1.46854 * 119.23330 * 303.10292 * 16 15 14 26 26 C 1.53191 * 117.71022 * 0.14192 * 13 10 9 27 27 C 1.38358 * 120.34680 * 180.27935 * 2 1 3 28 28 H 1.08999 * 109.46939 * 269.72704 * 1 2 3 29 29 H 1.08997 * 109.47400 * 149.72563 * 1 2 3 30 30 H 1.09001 * 109.46781 * 29.72033 * 1 2 3 31 31 H 1.08005 * 119.45547 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.71044 * 179.68321 * 5 4 3 33 33 H 0.96999 * 120.00266 * 0.02562 * 9 7 6 34 34 H 1.09004 * 117.50246 * 214.95476 * 12 10 9 35 35 H 1.08991 * 117.50335 * 359.97438 * 12 10 9 36 36 H 1.09006 * 109.58907 * 278.67042 * 14 13 10 37 37 H 1.08994 * 109.59275 * 39.10333 * 14 13 10 38 38 H 1.09001 * 109.57793 * 291.50438 * 15 14 13 39 39 H 1.08996 * 109.57896 * 171.10347 * 15 14 13 40 40 H 0.96998 * 120.00270 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.57895 * 297.10728 * 25 16 15 42 42 H 1.08998 * 109.58399 * 176.70630 * 25 16 15 43 43 H 1.08992 * 109.58832 * 320.90015 * 26 13 10 44 44 H 1.08994 * 109.58799 * 81.33117 * 26 13 10 45 45 H 1.08004 * 120.85693 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1938 0.0000 4 7 3.5253 1.2106 0.0059 5 6 4.2349 0.1013 0.0005 6 6 3.6053 -1.1438 -0.0055 7 6 4.4022 -2.3890 -0.0121 8 8 3.8431 -3.4683 -0.0179 9 7 5.7486 -2.3275 -0.0117 10 6 6.5382 -3.5614 -0.0188 11 1 5.9742 -4.4815 0.1347 12 6 7.7470 -3.6214 -0.9553 13 6 7.9535 -3.4969 0.5539 14 6 8.4752 -4.7263 1.3042 15 6 10.0079 -4.6791 1.3233 16 7 10.4351 -3.3629 1.8145 17 6 11.2532 -3.2639 2.9080 18 1 11.2030 -2.3916 3.5429 19 6 12.1473 -4.2846 3.2007 20 7 12.4691 -5.1631 2.2749 21 14 12.8935 -4.4116 4.9084 22 1 12.0276 -5.2609 5.7651 23 1 14.2452 -5.0193 4.8141 24 1 13.0011 -3.0554 5.5037 25 6 9.9752 -2.1540 1.1191 26 6 8.4419 -2.1499 1.0960 27 6 2.2060 -1.1940 -0.0058 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3634 -0.8875 -0.5181 30 1 -0.3633 0.8925 -0.5095 31 1 1.6630 2.1274 -0.0004 32 1 5.3136 0.1558 0.0005 33 1 6.1948 -1.4662 -0.0068 34 1 7.9785 -4.5811 -1.4175 35 1 7.9544 -2.7431 -1.5664 36 1 8.0967 -4.7184 2.3264 37 1 8.1438 -5.6321 0.7965 38 1 10.3907 -4.8345 0.3146 39 1 10.3890 -5.4571 1.9847 40 1 13.0942 -5.8762 2.4793 41 1 10.3559 -2.1530 0.0977 42 1 10.3350 -1.2702 1.6460 43 1 8.0883 -1.3462 0.4502 44 1 8.0616 -2.0032 2.1069 45 1 1.6858 -2.1405 -0.0109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016551564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:52 Heat of formation + Delta-G solvation = 41.678320 kcal Electronic energy + Delta-G solvation = -25680.482027 eV Core-core repulsion = 22084.973844 eV Total energy + Delta-G solvation = -3595.508183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.96590 -39.64206 -38.30786 -35.54645 -34.19864 -33.34738 -32.24918 -31.46962 -30.01700 -28.32758 -27.69263 -25.10400 -24.35546 -23.12755 -22.49369 -21.94955 -20.88921 -20.39077 -18.33256 -17.97314 -17.25391 -16.89396 -16.33114 -15.82570 -15.25635 -14.95117 -14.68294 -14.37186 -14.10809 -13.85274 -13.55659 -13.44141 -13.39419 -13.18364 -13.09761 -13.00832 -12.70984 -12.33030 -12.24892 -11.68726 -11.62763 -11.36161 -10.99967 -10.75345 -10.49373 -10.42785 -10.34099 -10.15431 -9.96810 -9.77774 -9.70781 -9.63777 -9.39436 -9.37820 -8.52621 -8.45718 -6.65477 -5.79566 -3.22936 0.29361 0.80974 2.60889 2.89528 3.37667 3.44948 3.45699 3.48561 3.91028 4.15495 4.28552 4.41028 4.48255 4.49183 4.55154 4.73542 4.92524 5.04092 5.09616 5.13528 5.14229 5.25687 5.38344 5.46227 5.51468 5.61770 5.64672 5.74512 5.84195 6.02263 6.04912 6.05210 6.17258 6.26928 6.40928 6.48932 6.59872 6.62268 6.67749 6.81196 6.94757 7.33847 7.36275 7.47230 7.66241 7.79290 8.02484 8.45816 9.21105 9.84538 10.41007 11.28165 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.002577 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.284998 B =10864.524710 C =11272.752281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.146 4.146 3 C 0.118 3.882 4 N -0.482 5.482 5 C 0.128 3.872 6 C -0.178 4.178 7 C 0.564 3.436 8 O -0.536 6.536 9 N -0.688 5.688 10 C 0.067 3.933 11 H 0.134 0.866 12 C -0.181 4.181 13 C -0.095 4.095 14 C -0.106 4.106 15 C 0.173 3.827 16 N -0.589 5.589 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.150 3.850 26 C -0.098 4.098 27 C -0.019 4.019 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.400 0.600 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.091 0.909 40 H 0.254 0.746 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.065 0.935 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.024 9.796 -6.842 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.038 4.038 4 N -0.189 5.189 5 C -0.030 4.030 6 C -0.184 4.184 7 C 0.351 3.649 8 O -0.414 6.414 9 N -0.337 5.337 10 C -0.039 4.039 11 H 0.152 0.848 12 C -0.219 4.219 13 C -0.096 4.096 14 C -0.145 4.145 15 C 0.047 3.953 16 N -0.311 5.311 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.023 3.977 26 C -0.138 4.138 27 C -0.046 4.046 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.237 0.763 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.833 9.702 -6.822 23.973 hybrid contribution 0.280 -0.502 0.761 0.954 sum -20.553 9.200 -6.061 23.320 Atomic orbital electron populations 1.20742 0.89532 1.03474 1.02986 1.20959 0.98086 0.93727 1.02008 1.22931 0.89925 0.97735 0.93254 1.67711 1.08057 1.30874 1.12280 1.22985 1.00337 0.86843 0.92871 1.21035 0.95226 0.94802 1.07292 1.17977 0.82078 0.88341 0.76526 1.90769 1.71045 1.29620 1.49945 1.45312 1.05358 1.09467 1.73552 1.21960 0.87231 0.88499 1.06163 0.84831 1.23543 1.01130 1.03410 0.93832 1.21977 0.94451 0.98791 0.94387 1.21889 1.00892 0.93026 0.98714 1.20771 0.87264 0.89193 0.98091 1.43976 1.55050 0.99875 1.32242 1.19192 1.12773 1.05553 1.00808 0.91768 1.25051 0.96916 0.99828 0.97816 1.70033 1.35406 1.17908 1.31172 0.86305 0.78197 0.77852 0.84508 1.21429 1.21785 1.20440 1.20838 0.90232 0.91072 0.95552 1.21647 0.99851 0.92550 0.99744 1.21648 0.92417 0.99083 0.91404 0.90561 0.90964 0.90877 0.82243 0.82423 0.76336 0.88165 0.88960 0.92074 0.92955 0.96316 0.89140 0.93614 0.96257 0.92670 0.93697 0.91659 0.83464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.03 36.00 0.36 -0.16 16 2 C -0.15 -1.13 5.89 -104.54 -0.62 -1.75 16 3 C 0.12 0.97 10.85 -17.47 -0.19 0.78 16 4 N -0.48 -4.98 10.35 -12.91 -0.13 -5.11 16 5 C 0.13 1.29 10.71 -17.13 -0.18 1.11 16 6 C -0.18 -1.98 5.89 -104.82 -0.62 -2.60 16 7 C 0.56 7.58 7.78 -12.33 -0.10 7.49 16 8 O -0.54 -8.91 15.99 5.32 0.09 -8.83 16 9 N -0.69 -8.58 5.30 -54.83 -0.29 -8.87 16 10 C 0.07 0.96 6.14 -68.01 -0.42 0.54 16 11 H 0.13 2.07 7.40 -51.93 -0.38 1.69 16 12 C -0.18 -2.55 9.86 -26.80 -0.26 -2.81 16 13 C -0.09 -1.52 1.94 -154.49 -0.30 -1.82 16 14 C -0.11 -1.98 5.83 -26.45 -0.15 -2.14 16 15 C 0.17 4.02 5.40 -3.67 -0.02 4.00 16 16 N -0.59 -14.40 2.94 -172.25 -0.51 -14.91 16 17 C -0.25 -6.85 9.54 -15.06 -0.14 -7.00 16 18 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 19 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 20 N -0.90 -25.88 11.23 55.49 0.62 -25.26 16 21 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.15 3.01 6.52 -3.67 -0.02 2.99 16 26 C -0.10 -1.59 5.37 -26.45 -0.14 -1.74 16 27 C -0.02 -0.19 9.39 -38.87 -0.37 -0.55 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 31 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.16 1.27 6.42 -52.48 -0.34 0.94 16 33 H 0.40 4.14 5.18 -40.82 -0.21 3.93 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 2.38 5.93 -51.93 -0.31 2.07 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 1.09 7.92 -51.93 -0.41 0.68 16 43 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.15 1.39 7.74 -52.48 -0.41 0.98 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -32.04 365.63 -9.60 -41.64 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.60 Total: 2.98 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.26 Total: -3.68 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.31 Total: -54.15 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.04 -9.60 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016551564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.317 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds