Wall clock time and date at job start Tue Mar 31 2020 11:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38350 * 120.35466 * 2 1 4 4 N 1.31927 * 121.08418 * 179.70168 * 3 2 1 5 5 C 1.31692 * 121.87319 * 0.58668 * 4 3 2 6 6 C 1.39518 * 120.57203 * 359.70756 * 5 4 3 7 7 C 1.47843 * 120.56018 * 179.97438 * 6 5 4 8 8 O 1.21549 * 119.99840 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99850 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99828 * 180.02562 * 9 7 6 11 11 H 1.09006 * 115.55505 * 350.70626 * 10 9 7 12 12 C 1.53031 * 117.50080 * 136.39441 * 10 9 7 13 13 C 1.52814 * 117.50504 * 204.97714 * 10 9 7 14 14 C 1.53181 * 117.71473 * 144.90045 * 13 10 9 15 15 C 1.53355 * 108.77119 * 158.89317 * 14 13 10 16 16 N 1.46839 * 108.81614 * 51.30629 * 15 14 13 17 17 C 1.36928 * 120.38636 * 123.12422 * 16 15 14 18 18 H 1.08003 * 120.00242 * 208.88551 * 17 16 15 19 19 C 1.38811 * 120.00174 * 28.88410 * 17 16 15 20 20 N 1.31623 * 119.99932 * 17.85156 * 19 17 16 21 21 Si 1.86795 * 120.00324 * 197.85523 * 19 17 16 22 22 H 1.48501 * 109.47150 * 90.00024 * 21 19 17 23 23 H 1.48508 * 109.47377 * 210.00021 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99713 * 21 19 17 25 25 C 1.46854 * 119.23330 * 303.10292 * 16 15 14 26 26 C 1.53191 * 117.71022 * 0.14192 * 13 10 9 27 27 C 1.38358 * 120.34680 * 180.27935 * 2 1 3 28 28 H 1.08999 * 109.46939 * 269.72704 * 1 2 3 29 29 H 1.08997 * 109.47400 * 149.72563 * 1 2 3 30 30 H 1.09001 * 109.46781 * 29.72033 * 1 2 3 31 31 H 1.08005 * 119.45547 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.71044 * 179.68321 * 5 4 3 33 33 H 0.96999 * 120.00266 * 0.02562 * 9 7 6 34 34 H 1.09004 * 117.50246 * 214.95476 * 12 10 9 35 35 H 1.08991 * 117.50335 * 359.97438 * 12 10 9 36 36 H 1.09006 * 109.58907 * 278.67042 * 14 13 10 37 37 H 1.08994 * 109.59275 * 39.10333 * 14 13 10 38 38 H 1.09001 * 109.57793 * 291.50438 * 15 14 13 39 39 H 1.08996 * 109.57896 * 171.10347 * 15 14 13 40 40 H 0.96998 * 120.00270 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.57895 * 297.10728 * 25 16 15 42 42 H 1.08998 * 109.58399 * 176.70630 * 25 16 15 43 43 H 1.08992 * 109.58832 * 320.90015 * 26 13 10 44 44 H 1.08994 * 109.58799 * 81.33117 * 26 13 10 45 45 H 1.08004 * 120.85693 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1938 0.0000 4 7 3.5253 1.2106 0.0059 5 6 4.2349 0.1013 0.0005 6 6 3.6053 -1.1438 -0.0055 7 6 4.4022 -2.3890 -0.0121 8 8 3.8431 -3.4683 -0.0179 9 7 5.7486 -2.3275 -0.0117 10 6 6.5382 -3.5614 -0.0188 11 1 5.9742 -4.4815 0.1347 12 6 7.7470 -3.6214 -0.9553 13 6 7.9535 -3.4969 0.5539 14 6 8.4752 -4.7263 1.3042 15 6 10.0079 -4.6791 1.3233 16 7 10.4351 -3.3629 1.8145 17 6 11.2532 -3.2639 2.9080 18 1 11.2030 -2.3916 3.5429 19 6 12.1473 -4.2846 3.2007 20 7 12.4691 -5.1631 2.2749 21 14 12.8935 -4.4116 4.9084 22 1 12.0276 -5.2609 5.7651 23 1 14.2452 -5.0193 4.8141 24 1 13.0011 -3.0554 5.5037 25 6 9.9752 -2.1540 1.1191 26 6 8.4419 -2.1499 1.0960 27 6 2.2060 -1.1940 -0.0058 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3634 -0.8875 -0.5181 30 1 -0.3633 0.8925 -0.5095 31 1 1.6630 2.1274 -0.0004 32 1 5.3136 0.1558 0.0005 33 1 6.1948 -1.4662 -0.0068 34 1 7.9785 -4.5811 -1.4175 35 1 7.9544 -2.7431 -1.5664 36 1 8.0967 -4.7184 2.3264 37 1 8.1438 -5.6321 0.7965 38 1 10.3907 -4.8345 0.3146 39 1 10.3890 -5.4571 1.9847 40 1 13.0942 -5.8762 2.4793 41 1 10.3559 -2.1530 0.0977 42 1 10.3350 -1.2702 1.6460 43 1 8.0883 -1.3462 0.4502 44 1 8.0616 -2.0032 2.1069 45 1 1.6858 -2.1405 -0.0109 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016551564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:49 Heat of formation + Delta-G solvation = 22.315810 kcal Electronic energy + Delta-G solvation = -25681.321648 eV Core-core repulsion = 22084.973844 eV Total energy + Delta-G solvation = -3596.347804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.80367 -40.70602 -39.54539 -37.16074 -34.99267 -34.40971 -33.60675 -32.74745 -31.63226 -29.95779 -28.22610 -26.28422 -25.89311 -24.09413 -23.79508 -23.15751 -22.37019 -21.45772 -19.83031 -18.97809 -18.28691 -18.03455 -17.51381 -16.89961 -16.70745 -16.21055 -15.88305 -15.63320 -15.29844 -15.08456 -14.97255 -14.75091 -14.45381 -14.20868 -14.13992 -13.77950 -13.62638 -13.47220 -13.30428 -13.11111 -12.89299 -12.81882 -12.60152 -12.56724 -12.25618 -12.02184 -11.78705 -11.49746 -11.39850 -11.24680 -10.91057 -10.74936 -10.50967 -10.47656 -10.04121 -9.70947 -8.62260 -7.85953 -5.32009 -0.44990 0.12700 1.46168 1.48227 1.56307 1.67331 1.88733 2.51596 2.71981 2.95686 3.23567 3.28756 3.56777 3.64764 3.75890 3.78812 3.80015 3.85642 3.89914 3.97238 4.12088 4.16414 4.46000 4.52671 4.59876 4.72949 4.74924 4.83353 4.84338 4.87874 4.92637 4.95318 5.03311 5.07791 5.15507 5.16521 5.22765 5.30528 5.38367 5.41793 5.55272 5.57344 5.66288 5.78043 6.36003 6.41693 6.78908 7.02630 7.16897 7.89428 8.40043 9.19054 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.002577 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.284998 B =10864.524710 C =11272.752281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.119 3.881 4 N -0.501 5.501 5 C 0.126 3.874 6 C -0.194 4.194 7 C 0.566 3.434 8 O -0.575 6.575 9 N -0.679 5.679 10 C 0.083 3.917 11 H 0.122 0.878 12 C -0.167 4.167 13 C -0.113 4.113 14 C -0.094 4.094 15 C 0.181 3.819 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.065 0.935 19 C -0.051 4.051 20 N -0.933 5.933 21 Si 0.963 3.037 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.268 1.268 25 C 0.145 3.855 26 C -0.085 4.085 27 C -0.032 4.032 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.192 0.808 32 H 0.174 0.826 33 H 0.412 0.588 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.001 0.999 39 H 0.053 0.947 40 H 0.249 0.751 41 H 0.019 0.981 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.120 12.095 -7.280 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.037 4.037 4 N -0.209 5.209 5 C -0.032 4.032 6 C -0.200 4.200 7 C 0.354 3.646 8 O -0.455 6.455 9 N -0.329 5.329 10 C -0.023 4.023 11 H 0.140 0.860 12 C -0.205 4.205 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.055 3.945 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.246 4.246 20 N -0.579 5.579 21 Si 0.792 3.208 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.193 1.193 25 C 0.019 3.981 26 C -0.124 4.124 27 C -0.058 4.058 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.208 0.792 32 H 0.191 0.809 33 H 0.251 0.749 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.019 0.981 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.942 12.052 -7.267 26.915 hybrid contribution 0.854 -1.148 0.861 1.670 sum -22.089 10.904 -6.406 25.453 Atomic orbital electron populations 1.20830 0.87222 1.04664 1.03892 1.21253 0.99650 0.92736 1.00428 1.23510 0.89497 0.99130 0.91591 1.67777 1.09197 1.30856 1.13091 1.23189 1.01181 0.86345 0.92473 1.20892 0.95552 0.94031 1.09481 1.18330 0.82181 0.88656 0.75422 1.90748 1.71727 1.31191 1.51830 1.45200 1.05143 1.09381 1.73144 1.21687 0.86462 0.88970 1.05162 0.85982 1.23632 0.99856 1.04501 0.92499 1.21814 0.96391 0.97407 0.95872 1.21635 0.97387 0.95494 0.98829 1.20531 0.90115 0.88045 0.95847 1.44241 1.55108 1.01462 1.32352 1.19505 1.12554 1.05398 1.01681 0.91747 1.25773 0.97923 0.99934 1.00991 1.70178 1.36337 1.18545 1.32839 0.85327 0.76950 0.78030 0.80522 1.21442 1.22194 1.19290 1.21007 0.92920 0.89273 0.94866 1.21474 0.96566 0.93952 1.00388 1.21812 0.92259 0.99963 0.91804 0.89636 0.90705 0.88832 0.79168 0.80875 0.74896 0.87897 0.87023 0.93397 0.91430 0.98116 0.92856 0.94149 0.96287 0.92669 0.89643 0.92468 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.03 71.24 0.71 0.01 16 2 C -0.14 -1.82 5.89 -19.81 -0.12 -1.94 16 3 C 0.12 1.60 10.85 84.71 0.92 2.52 16 4 N -0.50 -9.13 10.35 -194.75 -2.01 -11.14 16 5 C 0.13 2.28 10.71 85.02 0.91 3.19 16 6 C -0.19 -4.05 5.89 -19.99 -0.12 -4.17 16 7 C 0.57 14.60 7.78 86.79 0.68 15.28 16 8 O -0.57 -18.97 15.99 -3.87 -0.06 -19.03 16 9 N -0.68 -15.57 5.30 -445.66 -2.36 -17.93 16 10 C 0.08 2.24 6.14 44.94 0.28 2.52 16 11 H 0.12 3.68 7.40 -2.38 -0.02 3.66 16 12 C -0.17 -4.32 9.86 30.55 0.30 -4.02 16 13 C -0.11 -3.50 1.94 -52.17 -0.10 -3.60 16 14 C -0.09 -3.55 5.83 30.77 0.18 -3.37 16 15 C 0.18 8.66 5.40 86.43 0.47 9.13 16 16 N -0.61 -30.17 2.94 -698.89 -2.05 -32.22 16 17 C -0.26 -14.32 9.54 84.03 0.80 -13.52 16 18 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 19 C -0.05 -2.84 4.88 84.86 0.41 -2.43 16 20 N -0.93 -55.35 11.23 21.65 0.24 -55.11 16 21 Si 0.96 45.12 29.59 68.60 2.03 47.15 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 C 0.14 5.71 6.52 86.43 0.56 6.27 16 26 C -0.08 -2.58 5.37 30.78 0.17 -2.41 16 27 C -0.03 -0.59 9.39 22.73 0.21 -0.38 16 28 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 30 H 0.09 0.25 8.09 -2.39 -0.02 0.23 16 31 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.17 2.34 6.42 -2.91 -0.02 2.32 16 33 H 0.41 7.32 5.18 -92.71 -0.48 6.84 16 34 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.07 2.30 8.10 -2.39 -0.02 2.28 16 38 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.05 2.94 5.93 -2.39 -0.01 2.92 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.05 2.13 7.92 -2.39 -0.02 2.11 16 43 H 0.09 1.90 6.75 -2.39 -0.02 1.89 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.14 2.66 7.74 -2.91 -0.02 2.64 16 Total: -1.00 -71.29 365.63 2.57 -68.73 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.52 Total: 16.49 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.27 Total: 3.07 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -6.19 Total: -116.41 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.06 Total: -19.03 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -71.29 2.57 -68.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016551564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.041 kcal (2) G-P(sol) polarization free energy of solvation -71.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds