Wall clock time and date at job start Tue Mar 31 2020 11:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38350 * 120.35186 * 2 1 4 4 N 1.31925 * 121.07901 * 180.02562 * 3 2 1 5 5 C 1.31694 * 121.88307 * 0.02562 * 4 3 2 6 6 C 1.39518 * 120.56416 * 359.97438 * 5 4 3 7 7 C 1.47843 * 120.55809 * 180.02562 * 6 5 4 8 8 O 1.21556 * 119.99686 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00002 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99826 * 179.97438 * 9 7 6 11 11 H 1.08997 * 115.56724 * 9.31053 * 10 9 7 12 12 C 1.53037 * 117.49986 * 223.60193 * 10 9 7 13 13 C 1.52841 * 59.99054 * 252.53621 * 12 10 9 14 14 C 1.53177 * 117.66010 * 252.27229 * 13 12 10 15 15 C 1.53348 * 108.76974 * 269.97890 * 14 13 12 16 16 N 1.46841 * 108.81421 * 308.68929 * 15 14 13 17 17 C 1.36936 * 120.38640 * 236.91839 * 16 15 14 18 18 H 1.08002 * 119.99646 * 28.89078 * 17 16 15 19 19 C 1.38809 * 120.00456 * 208.88947 * 17 16 15 20 20 N 1.31615 * 119.99806 * 17.84951 * 19 17 16 21 21 Si 1.86797 * 120.00100 * 197.85349 * 19 17 16 22 22 H 1.48492 * 109.47569 * 90.00048 * 21 19 17 23 23 H 1.48506 * 109.46945 * 209.99761 * 21 19 17 24 24 H 1.48504 * 109.47275 * 329.99493 * 21 19 17 25 25 C 1.46850 * 119.23046 * 56.90191 * 16 15 14 26 26 C 1.53188 * 117.65447 * 107.69747 * 13 12 10 27 27 C 1.38361 * 120.34382 * 180.30770 * 2 1 3 28 28 H 1.09006 * 109.46920 * 89.99215 * 1 2 3 29 29 H 1.08989 * 109.47238 * 209.99667 * 1 2 3 30 30 H 1.09002 * 109.46959 * 330.00013 * 1 2 3 31 31 H 1.07999 * 119.46060 * 0.02562 * 3 2 1 32 32 H 1.07998 * 119.71691 * 180.02562 * 5 4 3 33 33 H 0.97005 * 119.99791 * 359.97438 * 9 7 6 34 34 H 1.08998 * 117.50460 * 145.04570 * 12 10 9 35 35 H 1.08995 * 117.50587 * 0.03075 * 12 10 9 36 36 H 1.08999 * 109.58918 * 29.76491 * 14 13 12 37 37 H 1.08999 * 109.59070 * 150.18743 * 14 13 12 38 38 H 1.08999 * 109.57823 * 188.89530 * 15 14 13 39 39 H 1.08997 * 109.58291 * 68.48861 * 15 14 13 40 40 H 0.96999 * 120.00309 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.57793 * 183.29583 * 25 16 15 42 42 H 1.09002 * 109.69161 * 62.96259 * 25 16 15 43 43 H 1.08996 * 109.58612 * 209.80412 * 26 13 12 44 44 H 1.09000 * 109.58702 * 330.23961 * 26 13 12 45 45 H 1.07996 * 120.85871 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5253 1.2106 -0.0005 5 6 4.2350 0.1013 -0.0015 6 6 3.6054 -1.1437 -0.0016 7 6 4.4023 -2.3890 -0.0022 8 8 3.8431 -3.4683 -0.0017 9 7 5.7486 -2.3275 -0.0021 10 6 6.5382 -3.5615 -0.0021 11 1 5.9745 -4.4807 -0.1612 12 6 7.7470 -3.6269 0.9341 13 6 7.9547 -3.4933 -0.5743 14 6 8.4774 -4.7180 -1.3314 15 6 10.0100 -4.6702 -1.3488 16 7 10.4373 -3.3509 -1.8317 17 6 11.2557 -3.2451 -2.9245 18 1 11.2270 -4.0005 -3.6958 19 6 12.1223 -2.1669 -3.0408 20 7 12.4228 -1.4468 -1.9809 21 14 12.8618 -1.7380 -4.7017 22 1 11.9725 -0.7807 -5.4072 23 1 14.1973 -1.1194 -4.5040 24 1 13.0036 -2.9729 -5.5142 25 6 9.9763 -2.1464 -1.1295 26 6 8.4430 -2.1429 -1.1079 27 6 2.2060 -1.1941 -0.0064 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6631 2.1274 0.0004 32 1 5.3136 0.1558 -0.0015 33 1 6.1947 -1.4661 -0.0021 34 1 7.9786 -4.5892 1.3907 35 1 7.9544 -2.7521 1.5502 36 1 8.1458 -5.6269 -0.8294 37 1 8.0997 -4.7042 -2.3538 38 1 10.3920 -5.4441 -2.0145 39 1 10.3920 -4.8314 -0.3407 40 1 13.0280 -0.6932 -2.0622 41 1 10.3363 -1.2594 -1.6509 42 1 10.3562 -2.1489 -0.1078 43 1 8.0636 -1.9904 -2.1182 44 1 8.0886 -1.3432 -0.4575 45 1 1.6858 -2.1404 -0.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016551565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:57 Heat of formation + Delta-G solvation = 41.492060 kcal Electronic energy + Delta-G solvation = -25757.485607 eV Core-core repulsion = 22161.969347 eV Total energy + Delta-G solvation = -3595.516260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.93250 -39.61833 -38.29390 -35.53857 -34.16977 -33.34319 -32.25792 -31.32716 -30.13665 -28.29587 -27.65926 -25.07653 -24.35094 -23.09550 -22.48977 -21.94825 -20.88573 -20.35694 -18.32802 -17.93895 -17.22504 -16.88531 -16.33377 -15.76091 -15.23159 -14.94109 -14.67838 -14.34635 -14.15112 -13.83637 -13.58658 -13.42070 -13.39533 -13.13906 -13.01907 -12.98199 -12.64945 -12.33517 -12.24800 -11.75300 -11.53882 -11.40965 -11.00220 -10.75186 -10.53935 -10.40965 -10.30916 -10.12247 -9.97696 -9.74059 -9.70747 -9.60524 -9.39770 -9.34686 -8.52600 -8.46224 -6.65773 -5.80286 -3.23378 0.32809 0.84534 2.63398 2.92375 3.37142 3.44544 3.45429 3.51828 3.95393 4.15708 4.31787 4.44200 4.48960 4.51874 4.58278 4.76547 4.93221 5.06897 5.10148 5.15321 5.16324 5.28765 5.37720 5.48343 5.53593 5.61367 5.67952 5.76471 5.85906 6.02256 6.05957 6.08563 6.20781 6.25865 6.41968 6.50785 6.54352 6.61719 6.67990 6.81036 6.98150 7.31071 7.37862 7.51619 7.63047 7.78995 8.04567 8.45227 9.20612 9.84099 10.40641 11.27533 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.002874 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.222675 B = 9739.933414 C =10699.200735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.147 4.147 3 C 0.119 3.881 4 N -0.481 5.481 5 C 0.129 3.871 6 C -0.179 4.179 7 C 0.565 3.435 8 O -0.538 6.538 9 N -0.687 5.687 10 C 0.067 3.933 11 H 0.133 0.867 12 C -0.181 4.181 13 C -0.095 4.095 14 C -0.098 4.098 15 C 0.149 3.851 16 N -0.589 5.589 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.173 3.827 26 C -0.106 4.106 27 C -0.019 4.019 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.402 0.598 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.020 0.980 40 H 0.254 0.746 41 H 0.090 0.910 42 H 0.018 0.982 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.916 2.730 6.255 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.149 4.149 3 C -0.038 4.038 4 N -0.189 5.189 5 C -0.029 4.029 6 C -0.184 4.184 7 C 0.352 3.648 8 O -0.416 6.416 9 N -0.336 5.336 10 C -0.038 4.038 11 H 0.151 0.849 12 C -0.219 4.219 13 C -0.097 4.097 14 C -0.137 4.137 15 C 0.023 3.977 16 N -0.312 5.312 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.047 3.953 26 C -0.145 4.145 27 C -0.046 4.046 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.238 0.762 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.726 2.895 6.260 21.844 hybrid contribution 0.281 -0.031 -0.726 0.779 sum -20.446 2.864 5.534 21.374 Atomic orbital electron populations 1.20737 0.89555 1.03448 1.02953 1.20956 0.98062 0.93739 1.02118 1.22935 0.89937 0.97727 0.93203 1.67717 1.08036 1.30892 1.12228 1.23013 1.00406 0.86827 0.92684 1.21029 0.95212 0.94796 1.07378 1.17974 0.82064 0.88339 0.76464 1.90761 1.71077 1.29626 1.50144 1.45315 1.05353 1.09544 1.73415 1.21942 0.87207 0.88509 1.06176 0.84911 1.23543 1.01139 1.03356 0.93882 1.21990 0.94479 0.98899 0.94310 1.21695 0.99281 0.93612 0.99160 1.20858 0.90583 0.89232 0.97072 1.43972 1.54968 0.99316 1.32904 1.19207 1.13747 1.08879 0.96404 0.91733 1.25045 0.97039 1.00537 0.97007 1.70029 1.36764 1.20941 1.26862 0.86307 0.78197 0.78391 0.83990 1.21447 1.21784 1.20426 1.20745 0.86827 0.92033 0.95673 1.21830 1.01461 0.91834 0.99382 1.21636 0.92400 0.99052 0.91463 0.90590 0.90993 0.90889 0.82250 0.82348 0.76167 0.88314 0.88822 0.92807 0.91786 0.92624 0.96220 0.93633 0.89173 0.96346 0.91958 0.93851 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.03 36.01 0.36 -0.19 16 2 C -0.15 -1.20 5.89 -104.53 -0.62 -1.81 16 3 C 0.12 1.03 10.85 -17.47 -0.19 0.84 16 4 N -0.48 -5.31 10.35 -12.91 -0.13 -5.44 16 5 C 0.13 1.39 10.71 -17.13 -0.18 1.21 16 6 C -0.18 -2.07 5.89 -104.82 -0.62 -2.69 16 7 C 0.57 7.77 7.78 -12.33 -0.10 7.68 16 8 O -0.54 -8.98 15.99 5.32 0.08 -8.89 16 9 N -0.69 -8.91 5.30 -54.77 -0.29 -9.20 16 10 C 0.07 0.96 6.14 -67.95 -0.42 0.54 16 11 H 0.13 2.00 7.40 -51.93 -0.38 1.62 16 12 C -0.18 -2.55 9.86 -26.79 -0.26 -2.81 16 13 C -0.10 -1.53 1.94 -154.44 -0.30 -1.83 16 14 C -0.10 -1.67 5.83 -26.46 -0.15 -1.82 16 15 C 0.15 3.05 6.52 -3.68 -0.02 3.03 16 16 N -0.59 -14.40 2.94 -172.26 -0.51 -14.90 16 17 C -0.25 -6.83 9.54 -15.06 -0.14 -6.97 16 18 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.06 4.88 -17.43 -0.09 -0.02 16 20 N -0.90 -25.74 11.23 55.49 0.62 -25.12 16 21 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.17 3.96 5.40 -3.67 -0.02 3.94 16 26 C -0.11 -1.89 5.37 -26.45 -0.14 -2.03 16 27 C -0.02 -0.19 9.40 -38.87 -0.37 -0.56 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.09 -51.94 -0.42 -0.09 16 30 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.16 1.44 6.42 -52.49 -0.34 1.10 16 33 H 0.40 4.54 5.18 -40.82 -0.21 4.33 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.09 2.33 5.93 -51.93 -0.31 2.02 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 45 H 0.15 1.42 7.74 -52.49 -0.41 1.01 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -31.87 365.64 -9.60 -41.47 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.60 Total: 3.61 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.26 Total: -3.49 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.31 Total: -54.67 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.87 -9.60 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016551565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.962 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds