Wall clock time and date at job start Tue Mar 31 2020 11:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31698 * 119.71534 * 2 1 4 4 C 1.31920 * 121.87726 * 179.97438 * 3 2 1 5 5 C 1.38352 * 121.08130 * 0.02562 * 4 3 2 6 6 C 1.38357 * 119.30389 * 359.97438 * 5 4 3 7 7 C 1.39515 * 119.71649 * 179.97438 * 2 1 3 8 8 C 1.47837 * 120.56039 * 0.03749 * 7 2 1 9 9 O 1.21559 * 120.00165 * 353.62777 * 8 7 2 10 10 N 1.34781 * 120.00648 * 173.62747 * 8 7 2 11 11 C 1.46491 * 120.00620 * 179.97438 * 10 8 7 12 12 H 1.09004 * 115.55196 * 9.31756 * 11 10 8 13 13 C 1.53027 * 117.50477 * 223.58423 * 11 10 8 14 14 C 1.52815 * 117.50364 * 154.99357 * 11 10 8 15 15 C 1.53185 * 117.71148 * 359.86972 * 14 11 10 16 16 C 1.53355 * 108.77070 * 158.88516 * 15 14 11 17 17 N 1.46846 * 108.81569 * 51.30065 * 16 15 14 18 18 C 1.36932 * 120.38037 * 123.12140 * 17 16 15 19 19 H 1.07994 * 120.00434 * 209.07497 * 18 17 16 20 20 C 1.38822 * 120.00111 * 29.08254 * 18 17 16 21 21 N 1.31623 * 119.99677 * 16.54308 * 20 18 17 22 22 Si 1.86793 * 120.00077 * 196.54679 * 20 18 17 23 23 H 1.48502 * 109.47220 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47159 * 120.00010 * 22 20 18 25 25 H 1.48506 * 109.47040 * 239.99836 * 22 20 18 26 26 C 1.46845 * 119.23318 * 303.10377 * 17 16 15 27 27 C 1.53181 * 117.71818 * 215.10080 * 14 11 10 28 28 H 1.09007 * 109.46595 * 263.29715 * 1 2 3 29 29 H 1.09001 * 109.47156 * 23.28936 * 1 2 3 30 30 H 1.08992 * 109.47437 * 143.29574 * 1 2 3 31 31 H 1.08004 * 119.46229 * 180.02562 * 4 3 2 32 32 H 1.08007 * 120.34995 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.85519 * 180.27678 * 6 5 4 34 34 H 0.96999 * 119.98829 * 359.97438 * 10 8 7 35 35 H 1.09003 * 117.50113 * 359.97438 * 13 11 10 36 36 H 1.09001 * 117.50612 * 145.04511 * 13 11 10 37 37 H 1.09008 * 109.58284 * 278.66555 * 15 14 11 38 38 H 1.08994 * 109.59166 * 39.09441 * 15 14 11 39 39 H 1.09000 * 109.57812 * 291.50746 * 16 15 14 40 40 H 1.08998 * 109.58260 * 171.10333 * 16 15 14 41 41 H 0.96998 * 119.99582 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.57924 * 297.10313 * 26 17 16 43 43 H 1.09000 * 109.58044 * 176.70301 * 26 17 16 44 44 H 1.09002 * 109.59044 * 320.90626 * 27 14 11 45 45 H 1.08997 * 109.58507 * 81.33748 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.2365 0.0365 0.0005 6 6 3.5987 -1.1913 0.0005 7 6 2.1986 -1.2117 0.0005 8 6 1.4656 -2.4955 0.0003 9 8 0.2556 -2.5047 0.1164 10 7 2.1388 -3.6560 -0.1287 11 6 1.4126 -4.9282 -0.1284 12 1 0.3266 -4.8496 -0.1792 13 6 2.0008 -6.0776 0.6929 14 6 2.0678 -6.1151 -0.8337 15 6 3.4326 -5.8880 -1.4912 16 6 4.1317 -7.2428 -1.6574 17 7 3.2117 -8.1718 -2.3259 18 6 3.5752 -8.7853 -3.4948 19 1 2.8206 -9.0665 -4.2145 20 6 4.9137 -9.0459 -3.7549 21 7 5.7929 -9.0125 -2.7760 22 14 5.4669 -9.4440 -5.4941 23 1 4.2940 -9.4188 -6.4046 24 1 6.4620 -8.4360 -5.9399 25 1 6.0843 -10.7944 -5.5202 26 6 1.8975 -8.4355 -1.7260 27 6 1.1530 -7.1050 -1.5615 28 1 -0.3633 -0.1200 1.0207 29 1 -0.3633 0.9439 -0.4063 30 1 -0.3634 -0.8238 -0.6142 31 1 3.9735 2.1533 0.0009 32 1 5.3152 0.0910 0.0014 33 1 4.1661 -2.1103 0.0050 34 1 3.1043 -3.6487 -0.2218 35 1 2.9285 -5.8872 1.2327 36 1 1.3018 -6.7554 1.1829 37 1 3.2948 -5.4256 -2.4687 38 1 4.0390 -5.2389 -0.8598 39 1 4.4012 -7.6374 -0.6777 40 1 5.0295 -7.1188 -2.2629 41 1 6.7281 -9.1950 -2.9577 42 1 2.0286 -8.9038 -0.7505 43 1 1.3249 -9.0964 -2.3767 44 1 0.2469 -7.2632 -0.9766 45 1 0.8926 -6.7082 -2.5427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016802959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:11 Heat of formation + Delta-G solvation = 47.814200 kcal Electronic energy + Delta-G solvation = -26062.038683 eV Core-core repulsion = 22466.796571 eV Total energy + Delta-G solvation = -3595.242111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.99567 -39.56982 -38.28832 -35.58677 -33.91643 -32.87589 -32.44274 -31.38617 -30.15707 -28.40523 -27.81344 -24.96619 -24.38227 -22.78781 -22.52942 -21.91822 -21.02355 -20.42702 -18.36158 -17.91625 -17.07411 -16.61410 -16.24338 -15.84532 -15.35581 -15.08929 -14.79038 -14.18282 -14.09692 -13.85483 -13.59904 -13.43126 -13.40451 -13.05700 -12.77978 -12.58159 -12.52230 -12.32568 -12.09630 -11.76992 -11.54346 -11.41492 -11.00851 -10.77164 -10.52400 -10.32430 -10.22707 -10.14213 -10.00515 -9.75000 -9.67259 -9.61566 -9.39243 -9.30112 -8.52103 -8.48435 -6.67301 -5.82554 -3.26288 0.37949 0.87588 2.66702 2.94337 3.33831 3.42351 3.44625 3.52897 4.00059 4.14307 4.36443 4.40284 4.46538 4.47079 4.72700 4.92902 5.05401 5.08523 5.13367 5.26446 5.36020 5.44073 5.46302 5.59265 5.61729 5.67560 5.79137 5.85275 5.98341 6.00492 6.06202 6.08061 6.23754 6.37049 6.39938 6.51157 6.52669 6.60061 6.66115 6.79155 6.96333 7.29272 7.37898 7.61256 7.61839 7.76587 8.07188 8.43098 9.18468 9.81696 10.38163 11.25123 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.003038 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.881534 B = 9215.765666 C =10111.475883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.189 3.811 3 N -0.492 5.492 4 C 0.126 3.874 5 C -0.188 4.188 6 C -0.038 4.038 7 C -0.189 4.189 8 C 0.565 3.435 9 O -0.530 6.530 10 N -0.689 5.689 11 C 0.069 3.931 12 H 0.134 0.866 13 C -0.181 4.181 14 C -0.096 4.096 15 C -0.105 4.105 16 C 0.173 3.827 17 N -0.590 5.590 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.149 3.851 27 C -0.098 4.098 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.400 0.600 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.018 0.982 40 H 0.091 0.909 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 16.523 7.662 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.051 3.949 3 N -0.201 5.201 4 C -0.031 4.031 5 C -0.208 4.208 6 C -0.065 4.065 7 C -0.195 4.195 8 C 0.352 3.648 9 O -0.409 6.409 10 N -0.338 5.338 11 C -0.037 4.037 12 H 0.151 0.849 13 C -0.220 4.220 14 C -0.098 4.098 15 C -0.145 4.145 16 C 0.047 3.953 17 N -0.312 5.312 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.022 3.978 27 C -0.137 4.137 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.237 0.763 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.530 17.233 7.721 19.677 hybrid contribution 1.691 -0.979 -0.771 2.101 sum -3.839 16.254 6.950 18.089 Atomic orbital electron populations 1.21059 0.87461 1.03900 1.04267 1.21561 0.97692 0.86504 0.89141 1.67682 1.09989 1.28664 1.13799 1.23014 0.89457 0.98821 0.91817 1.22105 1.01971 0.92984 1.03695 1.21820 0.93166 0.99153 0.92313 1.20802 0.94404 0.95085 1.09169 1.17942 0.87074 0.83201 0.76601 1.90718 1.13448 1.86951 1.49766 1.45313 1.10666 1.04983 1.72820 1.21913 0.96628 0.78744 1.06378 0.84855 1.23539 1.02877 1.00720 0.94855 1.21973 0.98217 0.96539 0.93049 1.21828 0.92802 1.01157 0.98684 1.20761 0.93432 0.84792 0.96285 1.43977 1.13211 1.48494 1.25516 1.19252 0.91769 1.33308 0.93759 0.91701 1.25063 0.97293 0.99878 0.97456 1.70027 1.02155 1.52942 1.29619 0.86238 0.78472 0.77579 0.84591 1.20228 1.21582 1.21720 1.20864 0.87815 0.92769 0.96321 1.21692 0.96012 0.96866 0.99160 0.89866 0.91267 0.87844 0.82186 0.83966 0.84330 0.76348 0.88932 0.88322 0.92019 0.93985 0.96417 0.89051 0.93710 0.96226 0.92620 0.92783 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 8.87 36.01 0.32 -0.93 16 2 C 0.19 2.29 6.82 -82.17 -0.56 1.73 16 3 N -0.49 -5.64 10.26 -9.14 -0.09 -5.73 16 4 C 0.13 1.10 11.17 -17.47 -0.20 0.90 16 5 C -0.19 -1.47 10.10 -39.50 -0.40 -1.87 16 6 C -0.04 -0.35 9.63 -38.87 -0.37 -0.73 16 7 C -0.19 -2.23 5.89 -104.83 -0.62 -2.85 16 8 C 0.56 7.60 7.70 -12.33 -0.09 7.50 16 9 O -0.53 -8.31 12.95 5.31 0.07 -8.24 16 10 N -0.69 -8.72 5.30 -54.83 -0.29 -9.01 16 11 C 0.07 0.96 6.14 -68.02 -0.42 0.55 16 12 H 0.13 1.96 7.40 -51.93 -0.38 1.57 16 13 C -0.18 -2.52 9.86 -26.79 -0.26 -2.78 16 14 C -0.10 -1.53 1.94 -154.49 -0.30 -1.83 16 15 C -0.11 -1.85 5.37 -26.45 -0.14 -1.99 16 16 C 0.17 3.91 5.39 -3.67 -0.02 3.90 16 17 N -0.59 -14.27 2.94 -172.25 -0.51 -14.78 16 18 C -0.25 -6.73 9.55 -15.06 -0.14 -6.87 16 19 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 21 N -0.90 -25.48 11.15 55.49 0.62 -24.86 16 22 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.15 3.02 6.51 -3.67 -0.02 3.00 16 27 C -0.10 -1.64 5.83 -26.46 -0.15 -1.80 16 28 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.30 5.87 -51.93 -0.30 1.00 16 31 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.14 1.01 6.57 -52.49 -0.34 0.67 16 34 H 0.40 4.41 5.27 -40.82 -0.22 4.19 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 38 H 0.04 0.62 6.75 -51.93 -0.35 0.27 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 2.33 5.90 -51.93 -0.31 2.03 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 44 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -31.03 360.43 -9.79 -40.82 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.51 Total: 4.27 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -3.47 Total: -4.12 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.27 Total: -54.39 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.07 Total: -8.24 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.03 -9.79 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016802959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.630 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds