Wall clock time and date at job start Tue Mar 31 2020 10:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38357 * 119.46186 * 2 1 4 4 C 1.38356 * 119.30244 * 180.02562 * 3 2 1 5 5 C 1.40022 * 118.29169 * 359.97438 * 4 3 2 6 6 C 1.47835 * 120.56045 * 179.97438 * 5 4 3 7 7 O 1.21555 * 119.99996 * 142.64500 * 6 5 4 8 8 N 1.34780 * 119.99963 * 322.64210 * 6 5 4 9 9 C 1.47418 * 125.64549 * 354.74082 * 8 6 5 10 10 C 1.54915 * 104.82984 * 204.15902 * 9 8 6 11 11 C 1.55157 * 101.58063 * 322.99297 * 10 9 8 12 12 H 1.08998 * 110.71938 * 277.13237 * 11 10 9 13 13 N 1.46504 * 110.71931 * 153.86663 * 11 10 9 14 14 C 1.36929 * 120.00005 * 160.02506 * 13 11 10 15 15 H 1.07997 * 120.00437 * 359.97438 * 14 13 11 16 16 C 1.38818 * 120.00105 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99827 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00248 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47277 * 119.99909 * 18 16 14 21 21 H 1.48501 * 109.47120 * 240.00061 * 18 16 14 22 22 C 1.47016 * 125.64598 * 174.77885 * 8 6 5 23 23 C 1.39522 * 118.87938 * 0.25488 * 5 4 3 24 24 C 1.50700 * 119.71641 * 179.75028 * 23 5 4 25 25 C 1.53004 * 117.49808 * 182.35425 * 24 23 5 26 26 C 1.52998 * 117.50214 * 113.69245 * 24 23 5 27 27 N 1.31701 * 120.56865 * 359.44993 * 23 5 4 28 28 H 1.08997 * 109.47136 * 90.00222 * 1 2 3 29 29 H 1.09003 * 109.47136 * 210.00643 * 1 2 3 30 30 H 1.09005 * 109.47089 * 330.00370 * 1 2 3 31 31 H 1.07995 * 120.34676 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.85339 * 179.97438 * 4 3 2 33 33 H 1.08995 * 110.37089 * 322.99473 * 9 8 6 34 34 H 1.09002 * 110.36987 * 85.32431 * 9 8 6 35 35 H 1.08998 * 111.00087 * 81.06291 * 10 9 8 36 36 H 1.08999 * 111.00653 * 204.87406 * 10 9 8 37 37 H 0.97001 * 119.99619 * 340.01670 * 13 11 10 38 38 H 0.96996 * 120.00061 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.88596 * 298.32432 * 22 8 6 40 40 H 1.08995 * 109.88553 * 59.48765 * 22 8 6 41 41 H 1.09007 * 115.54643 * 328.01655 * 24 23 5 42 42 H 1.08996 * 117.50043 * 359.97438 * 25 24 23 43 43 H 1.09002 * 117.49478 * 145.01993 * 25 24 23 44 44 H 1.08998 * 117.49749 * 214.98075 * 26 24 23 45 45 H 1.09000 * 117.49575 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2312 -0.0340 -0.0005 6 6 5.7083 -0.0966 -0.0016 7 8 6.2805 -0.9581 0.6370 8 7 6.4203 0.8015 -0.7109 9 6 5.8589 1.8246 -1.6115 10 6 7.0010 2.1455 -2.6078 11 6 8.2483 2.0633 -1.6888 12 1 8.3924 2.9995 -1.1495 13 7 9.4427 1.7217 -2.4654 14 6 10.6871 1.9909 -1.9615 15 1 10.7882 2.4554 -0.9917 16 6 11.8189 1.6668 -2.6971 17 7 11.6958 1.1003 -3.8787 18 14 13.5165 2.0347 -2.0100 19 1 13.3829 2.6695 -0.6741 20 1 14.2839 0.7698 -1.8830 21 1 14.2322 2.9580 -2.9268 22 6 7.8855 0.9224 -0.7149 23 6 3.4716 -1.2043 -0.0054 24 6 4.1627 -2.5435 -0.0112 25 6 3.2816 -3.7929 -0.0721 26 6 4.0022 -3.4266 1.2278 27 7 2.1558 -1.1487 0.0010 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6444 2.1381 0.0004 32 1 4.1275 2.1265 -0.0010 33 1 4.9928 1.4290 -2.1420 34 1 5.5850 2.7167 -1.0484 35 1 7.0496 1.3986 -3.4001 36 1 6.8867 3.1465 -3.0239 37 1 9.3519 1.3048 -3.3365 38 1 12.4866 0.8735 -4.3925 39 1 8.2404 1.1635 0.2871 40 1 8.3336 -0.0114 -1.0544 41 1 5.1195 -2.5764 -0.5324 42 1 2.2021 -3.6462 -0.1076 43 1 3.6590 -4.6479 -0.6329 44 1 4.8534 -4.0409 1.5216 45 1 3.3972 -3.0389 2.0473 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019202279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:26 Heat of formation + Delta-G solvation = 44.032200 kcal Electronic energy + Delta-G solvation = -26021.644641 eV Core-core repulsion = 22426.238530 eV Total energy + Delta-G solvation = -3595.406111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02817 -39.33684 -37.41204 -36.86702 -34.26868 -33.27432 -32.23940 -31.44832 -29.67044 -28.59012 -27.42422 -24.94678 -24.09304 -23.20299 -22.44273 -22.03374 -20.97755 -20.26932 -19.47983 -17.51435 -17.07432 -16.75942 -16.29609 -16.13269 -15.52958 -15.03505 -14.79564 -14.50483 -14.21633 -13.88452 -13.60356 -13.48466 -13.30792 -12.95375 -12.87770 -12.71843 -12.55939 -12.45481 -11.93273 -11.73765 -11.61619 -11.50374 -11.19027 -10.87931 -10.78817 -10.77107 -10.47125 -10.39135 -10.11674 -10.02062 -9.91170 -9.78620 -9.47665 -9.03261 -8.89381 -8.36527 -7.11563 -5.86154 -3.17179 0.56429 0.97458 2.80950 3.10347 3.39500 3.44929 3.46098 3.47616 3.83978 4.00014 4.31802 4.40776 4.50175 4.54913 4.75540 4.86616 4.95551 5.00406 5.05156 5.09673 5.19006 5.24449 5.25717 5.29821 5.42174 5.44900 5.61849 5.66148 5.67344 5.68943 5.77623 5.84828 5.87914 5.92323 6.05214 6.13114 6.19603 6.25039 6.31716 6.38438 6.47134 6.64826 6.84309 7.63287 7.66565 7.76331 8.28421 8.31750 9.43337 9.96241 10.30923 11.35913 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.002968 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.803438 B = 9430.274232 C =10250.497870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.147 3.853 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.175 4.175 6 C 0.571 3.429 7 O -0.526 6.526 8 N -0.607 5.607 9 C 0.100 3.900 10 C -0.140 4.140 11 C 0.172 3.828 12 H 0.066 0.934 13 N -0.713 5.713 14 C -0.249 4.249 15 H 0.073 0.927 16 C -0.009 4.009 17 N -0.929 5.929 18 Si 0.908 3.092 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.083 3.917 23 C 0.218 3.782 24 C -0.112 4.112 25 C -0.164 4.164 26 C -0.147 4.147 27 N -0.486 5.486 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.767 -0.371 6.369 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.009 3.991 3 C -0.206 4.206 4 C -0.066 4.066 5 C -0.180 4.180 6 C 0.358 3.642 7 O -0.404 6.404 8 N -0.340 5.340 9 C -0.024 4.024 10 C -0.179 4.179 11 C 0.060 3.940 12 H 0.084 0.916 13 N -0.353 5.353 14 C -0.379 4.379 15 H 0.091 0.909 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.218 1.218 22 C -0.042 4.042 23 C 0.080 3.920 24 C -0.130 4.130 25 C -0.201 4.201 26 C -0.185 4.185 27 N -0.196 5.196 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.774 -1.583 6.831 24.786 hybrid contribution 1.503 0.991 0.030 1.801 sum -22.271 -0.592 6.861 23.311 Atomic orbital electron populations 1.20756 0.88537 1.03624 1.03315 1.21450 0.97119 0.88172 0.92369 1.21871 0.94441 0.99443 1.04871 1.21910 0.94532 0.97557 0.92588 1.20709 0.94719 0.94601 1.07995 1.17685 0.85735 0.81021 0.79744 1.90797 1.71445 1.34797 1.43342 1.48483 1.08731 1.32790 1.44038 1.22444 0.97427 0.90936 0.91546 1.23073 0.94516 1.02548 0.97789 1.21209 0.86910 0.94587 0.91290 0.91607 1.42376 1.00101 1.72770 1.20020 1.19293 0.83263 1.33923 1.01466 0.90868 1.24780 0.98048 1.01042 0.96659 1.69667 1.28618 1.47074 1.12307 0.86102 0.84412 0.77508 0.78055 1.20422 1.21727 1.21766 1.23286 0.77038 1.02606 1.01266 1.20386 0.88208 0.93218 0.90226 1.20920 1.00154 0.86842 1.05133 1.23004 0.99483 0.97061 1.00569 1.22845 1.02704 1.01613 0.91294 1.67279 1.08785 1.29085 1.14412 0.90078 0.90324 0.90506 0.84250 0.83875 0.91118 0.91477 0.90420 0.89880 0.77834 0.93368 0.92267 0.90680 0.85694 0.87588 0.88658 0.88184 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.16 36.00 0.37 -0.31 16 2 C 0.15 1.47 6.78 -82.51 -0.56 0.91 16 3 C -0.19 -1.68 9.72 -39.49 -0.38 -2.06 16 4 C -0.04 -0.43 8.33 -38.87 -0.32 -0.75 16 5 C -0.18 -2.44 5.39 -104.82 -0.57 -3.00 16 6 C 0.57 9.53 7.02 -12.33 -0.09 9.44 16 7 O -0.53 -10.46 15.28 5.32 0.08 -10.37 16 8 N -0.61 -9.62 3.33 -171.64 -0.57 -10.19 16 9 C 0.10 1.24 5.25 -2.53 -0.01 1.22 16 10 C -0.14 -2.04 6.69 -24.58 -0.16 -2.20 16 11 C 0.17 3.20 3.59 -66.09 -0.24 2.96 16 12 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 13 N -0.71 -17.05 5.18 -51.65 -0.27 -17.32 16 14 C -0.25 -6.67 9.98 -15.06 -0.15 -6.82 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 18 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C 0.08 1.55 6.62 -3.07 -0.02 1.53 16 23 C 0.22 3.04 6.49 -82.17 -0.53 2.51 16 24 C -0.11 -1.55 4.65 -91.77 -0.43 -1.97 16 25 C -0.16 -1.85 10.03 -26.69 -0.27 -2.12 16 26 C -0.15 -1.79 10.24 -26.69 -0.27 -2.07 16 27 N -0.49 -6.09 9.19 -5.42 -0.05 -6.14 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.14 1.28 5.95 -52.48 -0.31 0.97 16 33 H 0.07 0.79 7.30 -51.93 -0.38 0.41 16 34 H 0.07 0.67 6.97 -51.93 -0.36 0.31 16 35 H 0.08 1.20 8.00 -51.93 -0.42 0.79 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.39 9.87 7.71 -40.82 -0.31 9.56 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 41 H 0.13 1.94 6.93 -51.93 -0.36 1.58 16 42 H 0.11 1.18 7.54 -51.93 -0.39 0.79 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -32.20 369.17 -10.00 -42.20 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.72 Total: 9.06 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.74 Total: -3.07 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.16 Total: -60.39 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.20 -10.00 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019202279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.232 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds