Wall clock time and date at job start Tue Mar 31 2020 10:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31690 * 119.71476 * 2 1 4 4 C 1.31927 * 121.87626 * 179.97438 * 3 2 1 5 5 C 1.50709 * 119.45629 * 180.02562 * 4 3 2 6 6 C 1.53005 * 117.49547 * 163.74942 * 5 4 3 7 7 C 1.53005 * 117.49613 * 95.09092 * 5 4 3 8 8 C 1.38349 * 121.08108 * 0.02562 * 4 3 2 9 9 C 1.38350 * 119.30606 * 359.97438 * 8 4 3 10 10 C 1.39518 * 119.71395 * 179.97438 * 2 1 3 11 11 C 1.47833 * 120.56577 * 0.04440 * 10 2 1 12 12 O 1.21558 * 120.00096 * 44.70905 * 11 10 2 13 13 N 1.34775 * 120.00410 * 224.71632 * 11 10 2 14 14 C 1.47025 * 125.64730 * 4.92306 * 13 11 10 15 15 C 1.54334 * 107.26566 * 178.85559 * 14 13 11 16 16 C 1.55162 * 103.01986 * 338.13994 * 15 14 13 17 17 H 1.09004 * 111.00039 * 277.23640 * 16 15 14 18 18 N 1.46497 * 111.00365 * 153.38502 * 16 15 14 19 19 C 1.36935 * 120.00078 * 161.35183 * 18 16 15 20 20 H 1.08004 * 119.99852 * 359.97438 * 19 18 16 21 21 C 1.38816 * 119.99924 * 180.02562 * 19 18 16 22 22 N 1.31611 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99748 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47163 * 89.99600 * 23 21 19 25 25 H 1.48492 * 109.46990 * 209.99497 * 23 21 19 26 26 H 1.48497 * 109.47272 * 329.99858 * 23 21 19 27 27 C 1.47426 * 125.64962 * 185.23689 * 13 11 10 28 28 H 1.09003 * 109.47272 * 95.60089 * 1 2 3 29 29 H 1.09006 * 109.46948 * 215.59970 * 1 2 3 30 30 H 1.08996 * 109.47381 * 335.60312 * 1 2 3 31 31 H 1.08994 * 115.55110 * 309.42055 * 5 4 3 32 32 H 1.09005 * 117.50017 * 359.97438 * 6 5 4 33 33 H 1.08999 * 117.49903 * 145.02164 * 6 5 4 34 34 H 1.09001 * 117.49145 * 214.97776 * 7 5 4 35 35 H 1.08996 * 117.49864 * 359.97135 * 7 5 4 36 36 H 1.08007 * 120.34396 * 179.97438 * 8 4 3 37 37 H 1.07996 * 120.85802 * 179.97438 * 9 8 4 38 38 H 1.09007 * 109.88057 * 298.39782 * 14 13 11 39 39 H 1.08992 * 109.87937 * 59.56359 * 14 13 11 40 40 H 1.09000 * 110.84844 * 219.67413 * 15 14 13 41 41 H 1.09000 * 110.51935 * 96.45267 * 15 14 13 42 42 H 0.97005 * 120.00090 * 341.34843 * 18 16 15 43 43 H 0.97006 * 120.00348 * 180.02562 * 22 21 19 44 44 H 1.08997 * 110.36681 * 322.92381 * 27 13 11 45 45 H 1.08998 * 110.36854 * 85.13774 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1935 0.0005 5 6 4.1692 2.5328 0.0011 6 6 5.6509 2.5629 0.3814 7 6 4.5997 3.1050 1.3532 8 6 4.2365 0.0364 0.0005 9 6 3.5987 -1.1913 0.0005 10 6 2.1985 -1.2117 0.0005 11 6 1.4656 -2.4956 0.0001 12 8 0.5151 -2.6526 -0.7411 13 7 1.8512 -3.4920 0.8216 14 6 2.9118 -3.4042 1.8361 15 6 2.9789 -4.7718 2.5482 16 6 1.5766 -5.3772 2.2753 17 1 0.8429 -5.0005 2.9880 18 7 1.6234 -6.8413 2.2974 19 6 0.4699 -7.5608 2.4614 20 1 -0.4743 -7.0489 2.5749 21 6 0.5144 -8.9481 2.4829 22 7 1.6650 -9.5718 2.3452 23 14 -1.0592 -9.9295 2.7074 24 1 -1.6571 -10.2169 1.3788 25 1 -0.7512 -11.2073 3.3983 26 1 -2.0200 -9.1446 3.5233 27 6 1.2839 -4.8525 0.8475 28 1 -0.3634 -0.1003 -1.0228 29 1 -0.3633 -0.8357 0.5983 30 1 -0.3634 0.9359 0.4245 31 1 3.8301 3.2371 -0.7586 32 1 6.1257 1.6142 0.6317 33 1 6.2866 3.2873 -0.1277 34 1 4.5441 4.1859 1.4829 35 1 4.3826 2.5131 2.2423 36 1 5.3152 0.0910 0.0005 37 1 4.1661 -2.1103 0.0002 38 1 3.8662 -3.1865 1.3567 39 1 2.6706 -2.6239 2.5579 40 1 3.1423 -4.6443 3.6184 41 1 3.7594 -5.3932 2.1092 42 1 2.4715 -7.3010 2.1958 43 1 1.6961 -10.5413 2.3598 44 1 0.2092 -4.8188 0.6686 45 1 1.7721 -5.4813 0.1029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019401280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:29 Heat of formation + Delta-G solvation = 24.578291 kcal Electronic energy + Delta-G solvation = -25714.199428 eV Core-core repulsion = 22117.949732 eV Total energy + Delta-G solvation = -3596.249696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.02774 -40.63706 -38.79541 -37.84989 -36.02433 -34.20813 -33.48863 -32.96898 -31.16793 -29.48492 -28.55877 -26.68107 -25.58606 -24.07521 -23.72918 -22.90613 -21.97670 -21.61050 -20.67198 -19.36483 -18.44525 -18.11552 -17.30251 -17.20195 -16.87162 -16.28241 -16.08241 -15.57941 -15.33238 -15.15219 -15.10628 -14.84371 -14.72251 -14.10220 -14.03762 -13.72650 -13.58472 -13.48381 -13.18350 -13.14845 -12.89482 -12.75807 -12.57461 -12.35694 -12.27887 -12.10895 -11.80463 -11.67084 -11.58780 -11.37677 -11.21557 -11.01890 -10.89453 -10.51633 -9.90279 -9.68370 -9.09479 -7.99014 -5.28744 -0.37452 0.12623 1.46655 1.48221 1.53112 1.56092 1.83406 2.51621 2.53827 2.79313 3.12608 3.29233 3.38698 3.57528 3.59947 3.62584 3.87891 3.95287 3.97422 4.03781 4.12649 4.18311 4.22928 4.31773 4.43905 4.50921 4.52514 4.55149 4.60316 4.66639 4.80745 4.81638 4.87593 4.96891 4.98136 5.04813 5.09670 5.15436 5.17282 5.23362 5.28692 5.33900 5.50710 5.54142 6.23025 6.40917 6.84768 6.95263 7.30758 8.01453 8.26128 9.23500 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.002618 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.979701 B =10693.476695 C =11342.471353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.170 3.830 3 N -0.500 5.500 4 C 0.174 3.826 5 C -0.132 4.132 6 C -0.152 4.152 7 C -0.161 4.161 8 C -0.171 4.171 9 C -0.034 4.034 10 C -0.196 4.196 11 C 0.574 3.426 12 O -0.574 6.574 13 N -0.606 5.606 14 C 0.104 3.896 15 C -0.127 4.127 16 C 0.166 3.834 17 H 0.060 0.940 18 N -0.722 5.722 19 C -0.247 4.247 20 H 0.073 0.927 21 C -0.067 4.067 22 N -0.963 5.963 23 Si 0.968 3.032 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.270 1.270 27 C 0.093 3.907 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.177 0.823 37 H 0.163 0.837 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.379 0.621 43 H 0.253 0.747 44 H 0.047 0.953 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.476 26.206 -1.527 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.031 3.969 3 N -0.210 5.210 4 C 0.036 3.964 5 C -0.151 4.151 6 C -0.189 4.189 7 C -0.198 4.198 8 C -0.190 4.190 9 C -0.059 4.059 10 C -0.202 4.202 11 C 0.363 3.637 12 O -0.455 6.455 13 N -0.338 5.338 14 C -0.017 4.017 15 C -0.165 4.165 16 C 0.055 3.945 17 H 0.078 0.922 18 N -0.361 5.361 19 C -0.379 4.379 20 H 0.091 0.909 21 C -0.260 4.260 22 N -0.613 5.613 23 Si 0.797 3.203 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.195 1.195 27 C -0.033 4.033 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.194 0.806 37 H 0.180 0.820 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.213 0.787 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.294 26.877 -1.892 28.843 hybrid contribution -0.581 -2.097 -0.285 2.194 sum 9.714 24.780 -2.177 26.705 Atomic orbital electron populations 1.20700 0.88104 1.03274 1.03473 1.21401 0.97442 0.86757 0.91255 1.67333 1.10589 1.28203 1.14860 1.21054 0.88575 0.95533 0.91192 1.20877 0.98278 0.93863 1.02089 1.23277 0.89561 1.04321 1.01733 1.23062 1.02650 1.01985 0.92149 1.22204 1.03270 0.90979 1.02589 1.22055 0.91739 1.00337 0.91784 1.20610 0.95788 0.93202 1.10568 1.18119 0.83031 0.83174 0.79382 1.90766 1.29730 1.82436 1.42539 1.48465 1.37782 1.11372 1.36192 1.22361 0.90873 0.98461 0.90054 1.22850 0.96597 0.94838 1.02237 1.21445 0.97046 0.83682 0.92330 0.92219 1.42402 1.06993 1.00299 1.86413 1.19569 0.88278 0.89257 1.40811 0.90935 1.25496 0.99675 0.97598 1.03240 1.69781 1.25215 1.07882 1.58428 0.85224 0.79467 0.78131 0.77441 1.21754 1.21885 1.19531 1.23030 0.97820 0.81305 1.01118 0.90117 0.91772 0.89208 0.85951 0.86996 0.86187 0.86935 0.89195 0.80558 0.81983 0.88468 0.89816 0.88080 0.90116 0.78740 0.93835 0.93485 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 8.93 71.24 0.64 -1.90 16 2 C 0.17 4.51 6.82 42.89 0.29 4.80 16 3 N -0.50 -12.23 10.17 -171.05 -1.74 -13.97 16 4 C 0.17 3.27 6.46 42.57 0.28 3.54 16 5 C -0.13 -1.72 6.21 -11.53 -0.07 -1.80 16 6 C -0.15 -1.06 9.79 30.62 0.30 -0.76 16 7 C -0.16 -1.60 10.24 30.62 0.31 -1.29 16 8 C -0.17 -2.60 9.34 22.32 0.21 -2.39 16 9 C -0.03 -0.63 8.58 22.73 0.20 -0.43 16 10 C -0.20 -5.13 5.39 -19.99 -0.11 -5.24 16 11 C 0.57 18.72 6.64 86.78 0.58 19.30 16 12 O -0.57 -23.21 15.74 -3.90 -0.06 -23.27 16 13 N -0.61 -18.52 3.33 -815.18 -2.71 -21.23 16 14 C 0.10 2.30 5.93 86.73 0.51 2.82 16 15 C -0.13 -3.34 6.57 31.79 0.21 -3.13 16 16 C 0.17 6.17 3.69 46.39 0.17 6.34 16 17 H 0.06 2.29 8.13 -2.38 -0.02 2.27 16 18 N -0.72 -34.61 5.28 -316.36 -1.67 -36.28 16 19 C -0.25 -13.43 9.98 84.03 0.84 -12.60 16 20 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 21 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 22 N -0.96 -57.27 13.06 21.65 0.28 -56.99 16 23 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 24 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 C 0.09 3.52 6.63 86.85 0.58 4.09 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 1.81 6.97 -2.38 -0.02 1.79 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.11 0.54 6.37 -2.38 -0.02 0.53 16 33 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.18 1.37 6.23 -2.91 -0.02 1.35 16 37 H 0.16 2.34 6.21 -2.91 -0.02 2.33 16 38 H 0.10 1.57 5.77 -2.38 -0.01 1.55 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.08 2.14 8.00 -2.39 -0.02 2.12 16 42 H 0.38 19.18 7.71 -92.70 -0.71 18.47 16 43 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 44 H 0.05 1.99 7.99 -2.39 -0.02 1.97 16 45 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -71.24 367.94 1.82 -69.42 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.30 Total: 26.47 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.39 Total: 8.05 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.84 Total: -128.46 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.24 1.82 -69.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019401280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.000 kcal (2) G-P(sol) polarization free energy of solvation -71.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds