Wall clock time and date at job start Tue Mar 31 2020 11:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38178 * 120.49697 * 2 1 4 4 N 1.31801 * 120.89119 * 180.28364 * 3 2 1 5 5 C 1.31820 * 122.05112 * 359.74175 * 4 3 2 6 6 C 1.38130 * 120.89714 * 359.97438 * 5 4 3 7 7 C 1.39790 * 120.50325 * 179.76788 * 2 1 3 8 8 C 1.48149 * 120.92166 * 0.02562 * 7 2 1 9 9 O 1.21513 * 119.99960 * 353.51823 * 8 7 2 10 10 N 1.34776 * 120.00098 * 173.51795 * 8 7 2 11 11 C 1.46499 * 120.00044 * 180.02562 * 10 8 7 12 12 C 1.53149 * 109.43500 * 205.00080 * 11 10 8 13 13 C 1.53698 * 108.87760 * 186.04141 * 12 11 10 14 14 H 1.09002 * 112.10309 * 188.25234 * 13 12 11 15 15 C 1.54611 * 107.83149 * 312.22128 * 13 12 11 16 16 C 1.54313 * 104.74644 * 88.67004 * 15 13 12 17 17 C 1.54607 * 104.75269 * 0.02562 * 16 15 13 18 18 H 1.09000 * 112.19388 * 146.80148 * 17 16 15 19 19 C 1.53141 * 109.44005 * 84.77456 * 11 10 8 20 20 N 1.48289 * 107.27791 * 64.00420 * 13 12 11 21 21 C 1.36939 * 128.20983 * 107.37474 * 20 13 12 22 22 H 1.08007 * 120.00132 * 14.95989 * 21 20 13 23 23 C 1.38810 * 120.00216 * 194.96562 * 21 20 13 24 24 N 1.31623 * 119.99827 * 9.21453 * 23 21 20 25 25 Si 1.86800 * 120.00361 * 189.22182 * 23 21 20 26 26 H 1.48500 * 109.46995 * 94.90278 * 25 23 21 27 27 H 1.48492 * 109.47192 * 214.90162 * 25 23 21 28 28 H 1.48498 * 109.46892 * 334.90441 * 25 23 21 29 29 H 1.09000 * 109.47486 * 263.68379 * 1 2 3 30 30 H 1.08998 * 109.47145 * 23.68638 * 1 2 3 31 31 H 1.09000 * 109.46884 * 143.69005 * 1 2 3 32 32 H 1.07993 * 119.55283 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.55139 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.49695 * 179.97438 * 6 5 4 35 35 H 0.97000 * 120.00115 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.39652 * 324.87998 * 11 10 8 37 37 H 1.09005 * 109.56777 * 305.85541 * 12 11 10 38 38 H 1.09003 * 109.57377 * 66.21480 * 12 11 10 39 39 H 1.08995 * 110.38352 * 207.48306 * 15 13 12 40 40 H 1.08998 * 110.38119 * 329.74565 * 15 13 12 41 41 H 1.09004 * 110.37873 * 118.81624 * 16 15 13 42 42 H 1.08996 * 110.38230 * 241.17778 * 16 15 13 43 43 H 1.09004 * 109.56656 * 293.77877 * 19 11 10 44 44 H 1.09003 * 109.56962 * 54.13587 * 19 11 10 45 45 H 0.96997 * 120.00217 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0056 5 6 4.2334 0.0873 -0.0064 6 6 3.6137 -1.1472 -0.0008 7 6 2.2165 -1.2044 0.0049 8 6 1.5079 -2.5054 0.0096 9 8 0.2990 -2.5384 0.1280 10 7 2.2041 -3.6525 -0.1175 11 6 1.5033 -4.9390 -0.1134 12 6 2.4618 -6.0399 0.3500 13 6 1.7628 -7.4011 0.2053 14 1 2.3414 -8.2089 0.6534 15 6 0.3529 -7.2778 0.8277 16 6 -0.5459 -6.7920 -0.3288 17 6 0.4054 -6.6680 -1.5413 18 1 -0.0935 -6.9024 -2.4817 19 6 1.0032 -5.2515 -1.5268 20 7 1.5070 -7.6134 -1.2399 21 6 2.1388 -8.4775 -2.0939 22 1 2.7530 -9.2738 -1.6998 23 6 1.9899 -8.3301 -3.4661 24 7 1.3957 -7.2611 -3.9525 25 14 2.6327 -9.6489 -4.6224 26 1 1.5343 -10.5898 -4.9595 27 1 3.1390 -9.0135 -5.8653 28 1 3.7356 -10.3919 -3.9615 29 1 -0.3634 -0.1131 1.0214 30 1 -0.3633 0.9411 -0.4128 31 1 -0.3633 -0.8281 -0.6085 32 1 1.6691 2.1263 0.0004 33 1 5.3120 0.1418 -0.0106 34 1 4.1995 -2.0546 -0.0018 35 1 3.1691 -3.6262 -0.2125 36 1 0.6544 -4.8866 0.5684 37 1 3.3611 -6.0240 -0.2658 38 1 2.7291 -5.8757 1.3939 39 1 0.0124 -8.2472 1.1914 40 1 0.3582 -6.5493 1.6384 41 1 -1.3285 -7.5225 -0.5340 42 1 -0.9833 -5.8231 -0.0884 43 1 0.2380 -4.5292 -1.8113 44 1 1.8358 -5.1994 -2.2285 45 1 1.2913 -7.1583 -4.9113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021250391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:01 Heat of formation + Delta-G solvation = 10.576427 kcal Electronic energy + Delta-G solvation = -26963.424386 eV Core-core repulsion = 23366.567524 eV Total energy + Delta-G solvation = -3596.856862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91552 -41.05637 -39.69423 -36.15110 -34.59952 -34.39186 -33.26412 -31.93517 -31.10223 -30.92777 -28.33916 -26.65897 -25.64029 -24.92344 -23.71827 -22.80748 -21.76133 -20.95122 -20.40103 -19.23219 -18.40245 -17.93786 -17.06232 -16.76928 -16.39225 -16.23475 -16.16036 -15.81817 -15.25347 -14.92462 -14.65862 -14.49739 -14.40916 -14.28850 -13.79689 -13.71295 -13.58327 -13.35740 -13.16028 -13.10551 -12.87339 -12.55456 -12.51981 -12.43269 -12.29705 -11.93135 -11.42767 -11.33917 -11.24543 -11.14744 -10.97314 -10.89380 -10.66795 -10.34676 -10.00715 -9.87256 -8.76986 -7.81225 -5.16680 -0.33118 0.07224 1.47707 1.49396 1.57207 1.83623 2.08567 2.52002 2.81100 3.36674 3.46637 3.50467 3.61204 3.76232 3.82712 3.94893 3.97332 4.10255 4.27114 4.33806 4.40558 4.42121 4.47139 4.56972 4.62225 4.74292 4.76066 4.78343 4.84324 4.86492 4.98636 5.08689 5.09893 5.14203 5.17793 5.27692 5.32135 5.39982 5.56120 5.56875 5.61751 5.63410 5.77185 5.85681 6.28736 6.50128 6.88528 7.10690 7.14294 7.78488 8.58613 9.29504 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.003575 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.841614 B = 7830.965097 C = 8382.184718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C 0.092 3.908 4 N -0.484 5.484 5 C 0.085 3.915 6 C -0.133 4.133 7 C -0.110 4.110 8 C 0.550 3.450 9 O -0.557 6.557 10 N -0.707 5.707 11 C 0.160 3.840 12 C -0.124 4.124 13 C 0.143 3.857 14 H 0.081 0.919 15 C -0.121 4.121 16 C -0.137 4.137 17 C 0.176 3.824 18 H 0.065 0.935 19 C -0.104 4.104 20 N -0.604 5.604 21 C -0.228 4.228 22 H 0.079 0.921 23 C -0.058 4.058 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.294 1.294 27 H -0.300 1.300 28 H -0.268 1.268 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.186 0.814 33 H 0.192 0.808 34 H 0.161 0.839 35 H 0.407 0.593 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.026 0.974 44 H 0.037 0.963 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 12.816 11.672 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.066 4.066 4 N -0.193 5.193 5 C -0.071 4.071 6 C -0.153 4.153 7 C -0.121 4.121 8 C 0.338 3.662 9 O -0.437 6.437 10 N -0.357 5.357 11 C 0.056 3.944 12 C -0.164 4.164 13 C 0.035 3.965 14 H 0.099 0.901 15 C -0.159 4.159 16 C -0.176 4.176 17 C 0.068 3.932 18 H 0.083 0.917 19 C -0.144 4.144 20 N -0.326 5.326 21 C -0.357 4.357 22 H 0.097 0.903 23 C -0.252 4.252 24 N -0.585 5.585 25 Si 0.797 3.203 26 H -0.221 1.221 27 H -0.227 1.227 28 H -0.192 1.192 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.203 0.797 33 H 0.209 0.791 34 H 0.179 0.821 35 H 0.244 0.756 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.216 13.463 11.517 18.006 hybrid contribution 0.141 -1.526 -1.398 2.074 sum 3.358 11.937 10.119 16.004 Atomic orbital electron populations 1.20890 0.88931 1.03583 1.03339 1.21308 0.98798 0.92786 0.96486 1.23094 0.89726 0.97837 0.95906 1.67608 1.08689 1.32571 1.10456 1.23223 1.01946 0.86590 0.95361 1.22622 0.93042 1.01554 0.98068 1.20358 0.94956 0.93209 1.03586 1.18528 0.86872 0.84367 0.76440 1.90709 1.14764 1.87475 1.50738 1.46104 1.11365 1.05596 1.72637 1.21072 0.95374 0.81254 0.96672 1.22372 0.97847 0.95232 1.00988 1.21776 0.95048 0.94566 0.85071 0.90095 1.22591 0.95231 1.01215 0.96906 1.22698 0.98011 1.00063 0.96859 1.21349 0.88184 0.87713 0.95948 0.91726 1.22141 0.98926 0.97594 0.95785 1.45375 1.38093 1.44019 1.05115 1.19322 1.23891 1.05308 0.87206 0.90292 1.25517 1.02327 0.99192 0.98163 1.70088 1.49386 1.27958 1.11089 0.85222 0.77843 0.78716 0.78504 1.22103 1.22703 1.19234 0.90534 0.89398 0.91394 0.79673 0.79140 0.82115 0.75641 0.89741 0.92786 0.89418 0.91573 0.89940 0.93158 0.91647 0.95554 0.94447 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 8.82 71.23 0.63 -1.85 16 2 C -0.09 -2.11 5.93 -19.50 -0.12 -2.23 16 3 C 0.09 1.80 10.84 84.68 0.92 2.72 16 4 N -0.48 -10.11 10.33 -196.01 -2.03 -12.14 16 5 C 0.08 1.49 11.17 84.67 0.95 2.43 16 6 C -0.13 -2.52 9.60 22.63 0.22 -2.31 16 7 C -0.11 -2.76 5.91 -19.88 -0.12 -2.87 16 8 C 0.55 16.83 7.69 86.88 0.67 17.50 16 9 O -0.56 -20.29 13.21 -3.76 -0.05 -20.34 16 10 N -0.71 -20.46 5.03 -444.66 -2.24 -22.70 16 11 C 0.16 5.45 2.09 45.09 0.09 5.54 16 12 C -0.12 -3.94 5.09 30.88 0.16 -3.79 16 13 C 0.14 5.21 4.32 45.43 0.20 5.40 16 14 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 15 C -0.12 -3.90 5.98 31.59 0.19 -3.71 16 16 C -0.14 -5.22 5.98 31.59 0.19 -5.03 16 17 C 0.18 8.21 3.14 45.46 0.14 8.35 16 18 H 0.06 3.61 6.33 -2.39 -0.02 3.59 16 19 C -0.10 -4.53 5.11 30.90 0.16 -4.37 16 20 N -0.60 -28.71 2.82 -637.18 -1.80 -30.51 16 21 C -0.23 -12.07 10.38 84.03 0.87 -11.20 16 22 H 0.08 4.01 7.85 -2.91 -0.02 3.99 16 23 C -0.06 -3.17 5.42 84.86 0.46 -2.71 16 24 N -0.94 -54.43 10.62 21.65 0.23 -54.20 16 25 Si 0.97 44.67 29.56 68.60 2.03 46.70 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.43 8.06 -2.39 -0.02 1.41 16 31 H 0.07 1.96 5.98 -2.39 -0.01 1.95 16 32 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.16 2.21 6.58 -2.91 -0.02 2.20 16 35 H 0.41 9.55 6.78 -92.71 -0.63 8.92 16 36 H 0.08 2.95 4.97 -2.38 -0.01 2.94 16 37 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.08 2.25 7.04 -2.39 -0.02 2.24 16 41 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.06 2.37 7.04 -2.39 -0.02 2.35 16 43 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.04 1.88 8.03 -2.39 -0.02 1.86 16 45 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -68.06 350.46 2.13 -65.92 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.38 Total: 25.38 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.60 Total: 1.89 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -5.83 Total: -119.55 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.34 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.06 2.13 -65.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021250391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.499 kcal (2) G-P(sol) polarization free energy of solvation -68.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds