Wall clock time and date at job start Tue Mar 31 2020 11:30:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50709 * 1
3 3 C 1.38397 * 120.85612 * 2 1
4 4 C 1.38310 * 119.30158 * 180.29679 * 3 2 1
5 5 N 1.31952 * 121.08360 * 359.72229 * 4 3 2
6 6 C 1.31670 * 121.87677 * 0.02562 * 5 4 3
7 7 C 1.39556 * 120.56643 * 0.02562 * 6 5 4
8 8 C 1.47849 * 120.55565 * 179.97438 * 7 6 5
9 9 O 1.21556 * 119.99295 * 223.44069 * 8 7 6
10 10 N 1.34768 * 120.00192 * 43.43607 * 8 7 6
11 11 C 1.47210 * 126.70488 * 355.27335 * 10 8 7
12 12 C 1.53781 * 106.38566 * 148.71233 * 11 10 8
13 13 H 1.08997 * 111.71064 * 257.23783 * 12 11 10
14 14 C 1.54323 * 109.06402 * 132.42364 * 12 11 10
15 15 C 1.55059 * 103.93720 * 222.03886 * 14 12 11
16 16 C 1.55056 * 102.11082 * 40.05726 * 15 14 12
17 17 H 1.08995 * 110.64967 * 78.61558 * 16 15 14
18 18 N 1.46498 * 110.53422 * 201.33235 * 16 15 14
19 19 C 1.36940 * 119.99906 * 269.51716 * 18 16 15
20 20 H 1.08004 * 119.99887 * 359.97438 * 19 18 16
21 21 C 1.38802 * 120.00300 * 180.02562 * 19 18 16
22 22 N 1.31623 * 119.99857 * 359.97438 * 21 19 18
23 23 Si 1.86803 * 120.00477 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.46614 * 59.99680 * 23 21 19
25 25 H 1.48503 * 109.47219 * 179.97438 * 23 21 19
26 26 H 1.48494 * 109.46869 * 300.00168 * 23 21 19
27 27 C 1.54324 * 103.93724 * 319.94346 * 16 15 14
28 28 H 1.08997 * 111.69400 * 262.79663 * 27 16 15
29 29 C 1.48779 * 126.25920 * 174.76543 * 10 8 7
30 30 H 1.08997 * 109.46782 * 264.56367 * 1 2 3
31 31 H 1.08995 * 109.46896 * 24.56593 * 1 2 3
32 32 H 1.09001 * 109.46718 * 144.56913 * 1 2 3
33 33 H 1.08000 * 120.34916 * 359.97438 * 3 2 1
34 34 H 1.07997 * 119.45544 * 179.69916 * 4 3 2
35 35 H 1.08009 * 119.71309 * 179.97438 * 6 5 4
36 36 H 1.09000 * 110.07602 * 29.48185 * 11 10 8
37 37 H 1.09000 * 110.07639 * 267.94583 * 11 10 8
38 38 H 1.09000 * 110.53918 * 340.65141 * 14 12 11
39 39 H 1.08999 * 110.53247 * 103.28741 * 14 12 11
40 40 H 1.09007 * 110.90241 * 281.85503 * 15 14 12
41 41 H 1.08996 * 110.90411 * 158.26629 * 15 14 12
42 42 H 0.96995 * 119.99938 * 89.52011 * 18 16 15
43 43 H 0.96999 * 120.00058 * 179.97438 * 22 21 19
44 44 H 1.09005 * 110.05499 * 92.07376 * 29 10 8
45 45 H 1.09002 * 110.85041 * 330.03740 * 29 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2169 1.1881 0.0000
4 6 3.5995 1.1506 -0.0062
5 7 4.2498 0.0024 -0.0067
6 6 3.6197 -1.1537 -0.0018
7 6 2.2250 -1.2017 0.0036
8 6 1.5176 -2.5000 0.0086
9 8 0.5529 -2.6691 -0.7114
10 7 1.9425 -3.4958 0.8111
11 6 3.1422 -3.4872 1.6642
12 6 2.8129 -4.3630 2.8846
13 1 2.5862 -3.7602 3.7640
14 6 3.9784 -5.3444 3.1299
15 6 3.2739 -6.6850 3.4627
16 6 2.0933 -6.6905 2.4575
17 1 2.4353 -6.9822 1.4645
18 7 1.0306 -7.5876 2.9178
19 6 1.0326 -8.9031 2.5376
20 1 1.8175 -9.2792 1.8981
21 6 0.0255 -9.7531 2.9733
22 7 -0.9314 -9.2947 3.7523
23 14 0.0278 -11.5475 2.4541
24 1 1.2760 -12.1980 2.9275
25 1 -1.1454 -12.2366 3.0492
26 1 -0.0449 -11.6345 0.9735
27 6 1.6024 -5.2274 2.4528
28 1 0.7483 -5.0869 3.1152
29 6 1.2766 -4.8116 1.0086
30 1 -0.3633 -0.0974 1.0230
31 1 -0.3633 0.9346 -0.4272
32 1 -0.3633 -0.8374 -0.5958
33 1 1.6967 2.1345 -0.0004
34 1 4.1558 2.0762 -0.0112
35 1 4.1871 -2.0727 -0.0028
36 1 3.3669 -2.4696 1.9836
37 1 3.9901 -3.9052 1.1216
38 1 4.5885 -5.4456 2.2323
39 1 4.5880 -5.0116 3.9699
40 1 2.9099 -6.6885 4.4902
41 1 3.9402 -7.5291 3.2848
42 1 0.3255 -7.2497 3.4918
43 1 -1.6354 -9.8885 4.0565
44 1 1.6798 -5.5434 0.3085
45 1 0.1979 -4.7239 0.8788
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001026231437.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:00
Heat of formation + Delta-G solvation = 13.422766 kcal
Electronic energy + Delta-G solvation = -26303.655266 eV
Core-core repulsion = 22706.921830 eV
Total energy + Delta-G solvation = -3596.733436 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 1.90 seconds
Orbital eigenvalues (eV)
-41.06594 -39.82346 -38.32248 -35.31240 -34.09801 -33.42179 -31.97628 -31.03801
-29.50642 -28.55341 -28.03903 -25.26578 -24.92294 -23.21567 -22.91254 -22.40026
-20.37522 -19.54287 -19.17549 -17.69483 -17.09134 -16.77885 -16.64657 -16.25647
-15.43696 -15.12453 -14.60749 -14.47990 -14.22843 -14.17402 -13.78003 -13.20445
-13.17860 -13.13099 -12.99331 -12.96577 -12.55768 -12.33351 -12.12797 -11.95468
-11.66560 -11.20129 -10.94941 -10.78357 -10.73898 -10.42614 -10.39437 -10.24873
-10.20575 -9.99295 -9.78799 -9.70111 -9.58078 -9.43823 -8.89563 -8.72043
-6.97814 -5.79068 -3.08080 0.47194 0.87185 2.57223 2.85960 3.43016
3.46545 3.47831 3.48447 4.02098 4.26101 4.37456 4.40737 4.50714
4.59191 4.69926 4.78736 4.83314 5.07687 5.19015 5.23567 5.31961
5.38015 5.38353 5.40706 5.52473 5.54588 5.57128 5.72762 5.78866
5.84106 5.91302 5.93582 6.00367 6.06015 6.14078 6.20939 6.26736
6.29409 6.37169 6.50135 6.60846 6.76266 6.99835 7.45626 7.55645
7.67768 8.02109 8.39379 9.50609 10.07416 10.41407 11.43348
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.023641 B = 0.002978 C = 0.002776
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.106931 B = 9398.879928 C =10084.152837
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.012 3.988
3 C -0.182 4.182
4 C 0.117 3.883
5 N -0.491 5.491
6 C 0.134 3.866
7 C -0.180 4.180
8 C 0.579 3.421
9 O -0.532 6.532
10 N -0.611 5.611
11 C 0.101 3.899
12 C -0.098 4.098
13 H 0.086 0.914
14 C -0.116 4.116
15 C -0.143 4.143
16 C 0.184 3.816
17 H 0.059 0.941
18 N -0.720 5.720
19 C -0.241 4.241
20 H 0.070 0.930
21 C -0.012 4.012
22 N -0.933 5.933
23 Si 0.906 3.094
24 H -0.286 1.286
25 H -0.291 1.291
26 H -0.286 1.286
27 C -0.108 4.108
28 H 0.089 0.911
29 C 0.119 3.881
30 H 0.078 0.922
31 H 0.072 0.928
32 H 0.102 0.898
33 H 0.141 0.859
34 H 0.160 0.840
35 H 0.161 0.839
36 H 0.073 0.927
37 H 0.075 0.925
38 H 0.065 0.935
39 H 0.060 0.940
40 H 0.066 0.934
41 H 0.061 0.939
42 H 0.384 0.616
43 H 0.256 0.744
44 H 0.076 0.924
45 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.460 21.372 -4.339 23.771
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.003 3.997
3 C -0.201 4.201
4 C -0.039 4.039
5 N -0.200 5.200
6 C -0.024 4.024
7 C -0.186 4.186
8 C 0.367 3.633
9 O -0.409 6.409
10 N -0.344 5.344
11 C -0.022 4.022
12 C -0.118 4.118
13 H 0.104 0.896
14 C -0.155 4.155
15 C -0.184 4.184
16 C 0.073 3.927
17 H 0.077 0.923
18 N -0.360 5.360
19 C -0.372 4.372
20 H 0.088 0.912
21 C -0.208 4.208
22 N -0.581 5.581
23 Si 0.737 3.263
24 H -0.213 1.213
25 H -0.217 1.217
26 H -0.212 1.212
27 C -0.128 4.128
28 H 0.108 0.892
29 C -0.002 4.002
30 H 0.097 0.903
31 H 0.091 0.909
32 H 0.120 0.880
33 H 0.159 0.841
34 H 0.177 0.823
35 H 0.178 0.822
36 H 0.091 0.909
37 H 0.093 0.907
38 H 0.084 0.916
39 H 0.079 0.921
40 H 0.085 0.915
41 H 0.079 0.921
42 H 0.218 0.782
43 H 0.066 0.934
44 H 0.095 0.905
45 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 9.809 21.159 -4.875 23.826
hybrid contribution -1.082 -0.846 0.070 1.375
sum 8.728 20.313 -4.805 22.625
Atomic orbital electron populations
1.21155 0.89467 1.04966 1.03858 1.20402 0.97338 0.91314 0.90634
1.22046 0.95592 0.98565 1.03936 1.22947 0.91750 0.96451 0.92779
1.67726 1.40735 0.98247 1.13257 1.23091 0.90276 0.96712 0.92295
1.20846 0.95501 0.94247 1.07960 1.17668 0.83502 0.82386 0.79773
1.90754 1.27916 1.81638 1.40623 1.48996 1.26606 1.15978 1.42789
1.22499 0.87642 1.00671 0.91421 1.22556 0.96310 0.96154 0.96747
0.89574 1.22491 0.95997 0.95928 1.01038 1.23300 0.98748 0.94982
1.01329 1.21246 0.88824 0.86797 0.95841 0.92344 1.42429 1.27510
1.06864 1.59167 1.19185 1.07405 0.85778 1.24863 0.91220 1.24736
0.97520 0.98240 1.00290 1.69646 1.14626 1.35035 1.38746 0.86286
0.76873 0.85093 0.78043 1.21279 1.21716 1.21235 1.22935 0.97786
0.97092 0.95019 0.89238 1.22532 0.98849 0.82167 0.96675 0.90340
0.90885 0.87964 0.84130 0.82294 0.82153 0.90902 0.90703 0.91594
0.92094 0.91532 0.92062 0.78179 0.93430 0.90534 0.89963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.36 9.58 36.01 0.34 -1.02 16
2 C 0.01 0.12 5.94 -103.91 -0.62 -0.50 16
3 C -0.18 -1.48 9.78 -39.50 -0.39 -1.87 16
4 C 0.12 0.98 11.17 -17.47 -0.20 0.78 16
5 N -0.49 -5.20 10.35 -12.91 -0.13 -5.34 16
6 C 0.13 1.45 9.07 -17.13 -0.16 1.29 16
7 C -0.18 -2.16 5.36 -104.82 -0.56 -2.73 16
8 C 0.58 8.34 7.13 -12.33 -0.09 8.25 16
9 O -0.53 -9.30 14.93 5.32 0.08 -9.22 16
10 N -0.61 -8.23 3.35 -171.41 -0.57 -8.80 16
11 C 0.10 1.09 4.96 -3.25 -0.02 1.07 16
12 C -0.10 -1.18 3.91 -88.52 -0.35 -1.53 16
13 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
14 C -0.12 -1.39 6.35 -24.95 -0.16 -1.55 16
15 C -0.14 -2.29 6.60 -24.56 -0.16 -2.46 16
16 C 0.18 3.36 3.03 -66.15 -0.20 3.16 16
17 H 0.06 1.10 7.14 -51.93 -0.37 0.73 16
18 N -0.72 -17.15 5.21 -51.71 -0.27 -17.41 16
19 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16
20 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16
21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16
22 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16
23 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16
24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
27 C -0.11 -1.65 3.55 -88.53 -0.31 -1.96 16
28 H 0.09 1.48 7.81 -51.93 -0.41 1.07 16
29 C 0.12 1.82 6.62 -2.38 -0.02 1.81 16
30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
31 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16
32 H 0.10 1.28 5.68 -51.93 -0.29 0.98 16
33 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16
34 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16
35 H 0.16 1.50 6.48 -52.48 -0.34 1.16 16
36 H 0.07 0.71 6.44 -51.93 -0.33 0.37 16
37 H 0.07 0.71 6.80 -51.93 -0.35 0.36 16
38 H 0.07 0.72 7.19 -51.93 -0.37 0.34 16
39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16
41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
42 H 0.38 9.80 7.61 -40.82 -0.31 9.49 16
43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
44 H 0.08 1.21 7.13 -51.93 -0.37 0.84 16
45 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16
LS Contribution 357.62 15.07 5.39 5.39
Total: -1.00 -31.82 357.62 -9.42 -41.24
By element:
Atomic # 1 Polarization: 14.79 SS G_CDS: -6.49 Total: 8.30 kcal
Atomic # 6 Polarization: -1.18 SS G_CDS: -3.12 Total: -4.29 kcal
Atomic # 7 Polarization: -58.27 SS G_CDS: -0.25 Total: -58.52 kcal
Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal
Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -31.82 -9.42 -41.24 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026231437.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.668 kcal
(2) G-P(sol) polarization free energy of solvation -31.824 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.843 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.423 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.91 seconds