Wall clock time and date at job start Tue Mar 31 2020 11:29:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50709 * 1
3 3 C 1.38397 * 120.85612 * 2 1
4 4 C 1.38310 * 119.30158 * 180.29679 * 3 2 1
5 5 N 1.31952 * 121.08360 * 359.72229 * 4 3 2
6 6 C 1.31670 * 121.87677 * 0.02562 * 5 4 3
7 7 C 1.39556 * 120.56643 * 0.02562 * 6 5 4
8 8 C 1.47849 * 120.55565 * 179.97438 * 7 6 5
9 9 O 1.21556 * 119.99295 * 223.44069 * 8 7 6
10 10 N 1.34768 * 120.00192 * 43.43607 * 8 7 6
11 11 C 1.47210 * 126.70488 * 355.27335 * 10 8 7
12 12 C 1.53781 * 106.38566 * 148.71233 * 11 10 8
13 13 H 1.08997 * 111.71064 * 257.23783 * 12 11 10
14 14 C 1.54323 * 109.06402 * 132.42364 * 12 11 10
15 15 C 1.55059 * 103.93720 * 222.03886 * 14 12 11
16 16 C 1.55056 * 102.11082 * 40.05726 * 15 14 12
17 17 H 1.08995 * 110.64967 * 78.61558 * 16 15 14
18 18 N 1.46498 * 110.53422 * 201.33235 * 16 15 14
19 19 C 1.36940 * 119.99906 * 269.51716 * 18 16 15
20 20 H 1.08004 * 119.99887 * 359.97438 * 19 18 16
21 21 C 1.38802 * 120.00300 * 180.02562 * 19 18 16
22 22 N 1.31623 * 119.99857 * 359.97438 * 21 19 18
23 23 Si 1.86803 * 120.00477 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.46614 * 59.99680 * 23 21 19
25 25 H 1.48503 * 109.47219 * 179.97438 * 23 21 19
26 26 H 1.48494 * 109.46869 * 300.00168 * 23 21 19
27 27 C 1.54324 * 103.93724 * 319.94346 * 16 15 14
28 28 H 1.08997 * 111.69400 * 262.79663 * 27 16 15
29 29 C 1.48779 * 126.25920 * 174.76543 * 10 8 7
30 30 H 1.08997 * 109.46782 * 264.56367 * 1 2 3
31 31 H 1.08995 * 109.46896 * 24.56593 * 1 2 3
32 32 H 1.09001 * 109.46718 * 144.56913 * 1 2 3
33 33 H 1.08000 * 120.34916 * 359.97438 * 3 2 1
34 34 H 1.07997 * 119.45544 * 179.69916 * 4 3 2
35 35 H 1.08009 * 119.71309 * 179.97438 * 6 5 4
36 36 H 1.09000 * 110.07602 * 29.48185 * 11 10 8
37 37 H 1.09000 * 110.07639 * 267.94583 * 11 10 8
38 38 H 1.09000 * 110.53918 * 340.65141 * 14 12 11
39 39 H 1.08999 * 110.53247 * 103.28741 * 14 12 11
40 40 H 1.09007 * 110.90241 * 281.85503 * 15 14 12
41 41 H 1.08996 * 110.90411 * 158.26629 * 15 14 12
42 42 H 0.96995 * 119.99938 * 89.52011 * 18 16 15
43 43 H 0.96999 * 120.00058 * 179.97438 * 22 21 19
44 44 H 1.09005 * 110.05499 * 92.07376 * 29 10 8
45 45 H 1.09002 * 110.85041 * 330.03740 * 29 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2169 1.1881 0.0000
4 6 3.5995 1.1506 -0.0062
5 7 4.2498 0.0024 -0.0067
6 6 3.6197 -1.1537 -0.0018
7 6 2.2250 -1.2017 0.0036
8 6 1.5176 -2.5000 0.0086
9 8 0.5529 -2.6691 -0.7114
10 7 1.9425 -3.4958 0.8111
11 6 3.1422 -3.4872 1.6642
12 6 2.8129 -4.3630 2.8846
13 1 2.5862 -3.7602 3.7640
14 6 3.9784 -5.3444 3.1299
15 6 3.2739 -6.6850 3.4627
16 6 2.0933 -6.6905 2.4575
17 1 2.4353 -6.9822 1.4645
18 7 1.0306 -7.5876 2.9178
19 6 1.0326 -8.9031 2.5376
20 1 1.8175 -9.2792 1.8981
21 6 0.0255 -9.7531 2.9733
22 7 -0.9314 -9.2947 3.7523
23 14 0.0278 -11.5475 2.4541
24 1 1.2760 -12.1980 2.9275
25 1 -1.1454 -12.2366 3.0492
26 1 -0.0449 -11.6345 0.9735
27 6 1.6024 -5.2274 2.4528
28 1 0.7483 -5.0869 3.1152
29 6 1.2766 -4.8116 1.0086
30 1 -0.3633 -0.0974 1.0230
31 1 -0.3633 0.9346 -0.4272
32 1 -0.3633 -0.8374 -0.5958
33 1 1.6967 2.1345 -0.0004
34 1 4.1558 2.0762 -0.0112
35 1 4.1871 -2.0727 -0.0028
36 1 3.3669 -2.4696 1.9836
37 1 3.9901 -3.9052 1.1216
38 1 4.5885 -5.4456 2.2323
39 1 4.5880 -5.0116 3.9699
40 1 2.9099 -6.6885 4.4902
41 1 3.9402 -7.5291 3.2848
42 1 0.3255 -7.2497 3.4918
43 1 -1.6354 -9.8885 4.0565
44 1 1.6798 -5.5434 0.3085
45 1 0.1979 -4.7239 0.8788
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001026231437.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:29:58
Heat of formation + Delta-G solvation = -6.833111 kcal
Electronic energy + Delta-G solvation = -26304.533627 eV
Core-core repulsion = 22706.921830 eV
Total energy + Delta-G solvation = -3597.611796 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.99340 -40.83070 -39.46275 -36.74360 -35.11446 -34.82651 -32.83381 -32.73188
-30.70074 -29.88436 -28.85386 -26.77696 -25.90354 -24.69378 -24.07677 -23.22162
-21.63774 -20.61638 -20.43225 -19.14791 -18.55038 -17.67850 -17.40589 -17.28804
-16.87956 -16.32438 -15.93458 -15.58562 -15.40354 -15.15971 -14.96489 -14.77480
-14.49075 -14.13437 -13.87907 -13.75458 -13.68168 -13.45941 -13.21282 -13.15916
-12.92174 -12.88299 -12.56928 -12.37727 -12.12628 -12.01551 -11.69499 -11.58879
-11.50867 -11.42509 -11.20335 -10.86212 -10.55298 -10.45012 -10.19228 -9.83679
-8.96235 -7.93328 -5.20837 -0.29457 0.15262 1.47011 1.49500 1.52694
1.55311 1.81611 2.56792 2.72084 3.19365 3.36625 3.39606 3.52578
3.61357 3.69321 3.72023 3.79150 4.02861 4.04773 4.15796 4.33214
4.38576 4.42879 4.46155 4.54206 4.58724 4.62337 4.64050 4.67938
4.70180 4.81713 4.84046 4.87905 5.03919 5.04217 5.09386 5.17712
5.26519 5.28723 5.39727 5.46674 5.51786 5.60339 5.62538 6.29213
6.39599 6.83531 6.94173 7.35080 8.12559 8.34016 9.30080
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.023641 B = 0.002978 C = 0.002776
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.106931 B = 9398.879928 C =10084.152837
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.003 4.003
3 C -0.171 4.171
4 C 0.121 3.879
5 N -0.506 5.506
6 C 0.134 3.866
7 C -0.200 4.200
8 C 0.576 3.424
9 O -0.574 6.574
10 N -0.609 5.609
11 C 0.103 3.897
12 C -0.089 4.089
13 H 0.100 0.900
14 C -0.101 4.101
15 C -0.138 4.138
16 C 0.175 3.825
17 H 0.054 0.946
18 N -0.734 5.734
19 C -0.236 4.236
20 H 0.076 0.924
21 C -0.077 4.077
22 N -0.971 5.971
23 Si 0.968 3.032
24 H -0.277 1.277
25 H -0.298 1.298
26 H -0.280 1.280
27 C -0.101 4.101
28 H 0.071 0.929
29 C 0.123 3.877
30 H 0.079 0.921
31 H 0.099 0.901
32 H 0.070 0.930
33 H 0.175 0.825
34 H 0.196 0.804
35 H 0.171 0.829
36 H 0.093 0.907
37 H 0.097 0.903
38 H 0.085 0.915
39 H 0.087 0.913
40 H 0.050 0.950
41 H 0.055 0.945
42 H 0.371 0.629
43 H 0.249 0.751
44 H 0.069 0.931
45 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.287 23.924 -4.536 27.275
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.012 4.012
3 C -0.190 4.190
4 C -0.035 4.035
5 N -0.216 5.216
6 C -0.023 4.023
7 C -0.206 4.206
8 C 0.366 3.634
9 O -0.455 6.455
10 N -0.341 5.341
11 C -0.018 4.018
12 C -0.108 4.108
13 H 0.118 0.882
14 C -0.139 4.139
15 C -0.179 4.179
16 C 0.066 3.934
17 H 0.072 0.928
18 N -0.373 5.373
19 C -0.368 4.368
20 H 0.094 0.906
21 C -0.269 4.269
22 N -0.622 5.622
23 Si 0.798 3.202
24 H -0.203 1.203
25 H -0.224 1.224
26 H -0.207 1.207
27 C -0.121 4.121
28 H 0.090 0.910
29 C 0.001 3.999
30 H 0.097 0.903
31 H 0.118 0.882
32 H 0.088 0.912
33 H 0.192 0.808
34 H 0.212 0.788
35 H 0.188 0.812
36 H 0.111 0.889
37 H 0.115 0.885
38 H 0.103 0.897
39 H 0.106 0.894
40 H 0.069 0.931
41 H 0.073 0.927
42 H 0.203 0.797
43 H 0.058 0.942
44 H 0.088 0.912
45 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 12.717 23.738 -5.079 27.405
hybrid contribution -1.928 -1.517 0.088 2.455
sum 10.789 22.221 -4.991 25.201
Atomic orbital electron populations
1.21101 0.89588 1.04971 1.03490 1.20638 0.97590 0.91903 0.91050
1.22382 0.95640 0.98846 1.02143 1.23598 0.92185 0.97015 0.90702
1.67806 1.41096 0.98742 1.13913 1.23197 0.89586 0.97503 0.92032
1.20716 0.96141 0.93147 1.10559 1.18157 0.83030 0.83241 0.79006
1.90731 1.29912 1.82437 1.42415 1.49012 1.27178 1.14924 1.42961
1.22677 0.86924 1.01751 0.90488 1.22553 0.94500 0.95884 0.97870
0.88206 1.22441 0.95777 0.92732 1.02954 1.23121 0.97745 0.97602
0.99423 1.21513 0.88419 0.87443 0.96001 0.92840 1.42631 1.28697
1.06803 1.59167 1.19578 1.06717 0.87093 1.23404 0.90650 1.25509
0.97799 1.02230 1.01350 1.69806 1.15529 1.36054 1.40772 0.85281
0.76697 0.80546 0.77687 1.20292 1.22438 1.20657 1.22739 0.98815
0.95891 0.94676 0.91026 1.22292 0.97525 0.83452 0.96664 0.90293
0.88247 0.91160 0.80781 0.78765 0.81161 0.88874 0.88529 0.89691
0.89444 0.93129 0.92656 0.79665 0.94176 0.91233 0.92584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.58 9.58 71.24 0.68 -1.90 16
2 C 0.00 -0.07 5.94 -19.40 -0.12 -0.18 16
3 C -0.17 -2.16 9.78 22.32 0.22 -1.94 16
4 C 0.12 1.53 11.17 84.69 0.95 2.48 16
5 N -0.51 -9.10 10.35 -194.75 -2.01 -11.12 16
6 C 0.13 2.58 9.07 85.04 0.77 3.35 16
7 C -0.20 -4.57 5.36 -19.99 -0.11 -4.68 16
8 C 0.58 16.78 7.13 86.79 0.62 17.40 16
9 O -0.57 -21.15 14.93 -3.89 -0.06 -21.20 16
10 N -0.61 -16.21 3.35 -814.49 -2.73 -18.94 16
11 C 0.10 1.96 4.96 86.51 0.43 2.39 16
12 C -0.09 -1.93 3.91 -9.44 -0.04 -1.97 16
13 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16
14 C -0.10 -2.08 6.35 31.75 0.20 -1.88 16
15 C -0.14 -4.32 6.60 32.00 0.21 -4.11 16
16 C 0.18 6.47 3.03 46.14 0.14 6.61 16
17 H 0.05 2.03 7.14 -2.39 -0.02 2.01 16
18 N -0.73 -36.16 5.21 -317.51 -1.65 -37.81 16
19 C -0.24 -12.94 9.96 84.03 0.84 -12.10 16
20 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16
21 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16
22 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16
23 Si 0.97 46.35 29.55 68.60 2.03 48.38 16
24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16
25 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16
26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
27 C -0.10 -3.12 3.55 -9.44 -0.03 -3.15 16
28 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16
29 C 0.12 3.91 6.62 86.20 0.57 4.48 16
30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
31 H 0.10 1.29 8.07 -2.39 -0.02 1.27 16
32 H 0.07 1.84 5.68 -2.39 -0.01 1.82 16
33 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16
34 H 0.20 1.00 8.06 -2.91 -0.02 0.97 16
35 H 0.17 2.73 6.48 -2.91 -0.02 2.71 16
36 H 0.09 1.48 6.44 -2.39 -0.02 1.46 16
37 H 0.10 1.48 6.80 -2.39 -0.02 1.46 16
38 H 0.08 1.49 7.19 -2.39 -0.02 1.47 16
39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
40 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16
41 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16
42 H 0.37 19.90 7.61 -92.71 -0.71 19.20 16
43 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16
44 H 0.07 2.29 7.13 -2.38 -0.02 2.27 16
45 H 0.06 2.05 8.02 -2.39 -0.02 2.03 16
Total: -1.00 -72.67 357.62 1.96 -70.71
By element:
Atomic # 1 Polarization: 28.21 SS G_CDS: 0.30 Total: 28.52 kcal
Atomic # 6 Polarization: -4.95 SS G_CDS: 5.80 Total: 0.85 kcal
Atomic # 7 Polarization: -121.14 SS G_CDS: -6.12 Total: -127.25 kcal
Atomic # 8 Polarization: -21.15 SS G_CDS: -0.06 Total: -21.20 kcal
Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal
Total: -72.67 1.96 -70.71 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026231437.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.879 kcal
(2) G-P(sol) polarization free energy of solvation -72.670 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.791 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds