Wall clock time and date at job start Tue Mar 31 2020 11:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38165 * 119.55115 * 2 1 4 4 C 1.39805 * 119.00030 * 180.02562 * 3 2 1 5 5 C 1.48147 * 120.92236 * 180.02562 * 4 3 2 6 6 O 1.21513 * 120.00263 * 6.33404 * 5 4 3 7 7 N 1.34774 * 119.99961 * 186.33651 * 5 4 3 8 8 C 1.49622 * 126.07440 * 183.67799 * 7 5 4 9 9 C 1.51760 * 102.37732 * 154.30621 * 8 7 5 10 10 H 1.09000 * 111.31270 * 288.39789 * 9 8 7 11 11 C 1.51568 * 123.23938 * 151.78721 * 9 8 7 12 12 C 1.56338 * 101.81095 * 208.16844 * 11 9 8 13 13 C 1.55996 * 105.77286 * 25.43102 * 12 11 9 14 14 H 1.08996 * 110.52752 * 248.33194 * 13 12 11 15 15 N 1.46503 * 110.52287 * 125.58626 * 13 12 11 16 16 C 1.36932 * 119.99999 * 90.43454 * 15 13 12 17 17 H 1.08001 * 120.00039 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00177 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99825 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00153 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46963 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47060 * 120.00062 * 20 18 16 23 23 H 1.48499 * 109.47079 * 240.00297 * 20 18 16 24 24 C 1.49705 * 103.98895 * 6.96342 * 13 12 11 25 25 H 1.09006 * 107.88241 * 77.72756 * 24 13 12 26 26 C 1.49298 * 126.07110 * 3.99475 * 7 5 4 27 27 C 1.39833 * 118.14925 * 359.73527 * 4 3 2 28 28 C 1.38126 * 119.00793 * 0.50803 * 27 4 3 29 29 N 1.31796 * 119.54946 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47052 * 270.02061 * 1 2 3 31 31 H 1.08997 * 109.47307 * 30.01792 * 1 2 3 32 32 H 1.09002 * 109.47571 * 150.01883 * 1 2 3 33 33 H 1.08001 * 120.50154 * 359.97438 * 3 2 1 34 34 H 1.08996 * 110.80431 * 272.63419 * 8 7 5 35 35 H 1.08999 * 110.80487 * 36.13370 * 8 7 5 36 36 H 1.09007 * 110.95687 * 326.29253 * 11 9 8 37 37 H 1.09000 * 110.96238 * 89.99595 * 11 9 8 38 38 H 1.08994 * 110.18857 * 144.51563 * 12 11 9 39 39 H 1.09008 * 110.18474 * 266.35554 * 12 11 9 40 40 H 0.97007 * 119.99942 * 270.42957 * 15 13 12 41 41 H 0.96999 * 119.99700 * 180.02562 * 19 18 16 42 42 H 1.09005 * 110.39249 * 292.37143 * 26 7 5 43 43 H 1.08999 * 110.39553 * 54.77225 * 26 7 5 44 44 H 1.08008 * 120.49814 * 180.28489 * 27 4 3 45 45 H 1.07999 * 119.55671 * 179.75522 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2019 0.0000 4 6 3.5864 1.1885 -0.0005 5 6 4.3599 2.4520 0.0000 6 8 3.7852 3.5162 0.1170 7 7 5.7011 2.4211 -0.1294 8 6 6.6193 3.6009 -0.0694 9 6 7.9258 2.9737 0.3811 10 1 7.8787 2.6679 1.4263 11 6 9.2856 3.5429 0.0287 12 6 10.1813 2.2615 0.0392 13 6 9.2201 1.0698 -0.2599 14 1 9.1146 0.4340 0.6191 15 7 9.7061 0.2923 -1.4025 16 6 10.5518 -0.7656 -1.2008 17 1 10.8602 -1.0271 -0.1993 18 6 11.0119 -1.5027 -2.2834 19 7 10.6357 -1.1844 -3.5038 20 14 12.1650 -2.9464 -2.0081 21 1 12.4341 -3.0948 -0.5552 22 1 11.5356 -4.1881 -2.5248 23 1 13.4424 -2.7033 -2.7253 24 6 7.9175 1.7296 -0.5900 25 1 7.9827 2.1073 -1.6105 26 6 6.5338 1.2045 -0.3645 27 6 4.2342 -0.0507 0.0046 28 6 3.4741 -1.2040 -0.0007 29 7 2.1570 -1.1465 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6493 2.1377 -0.0004 34 1 6.7261 4.0588 -1.0528 35 1 6.2673 4.3288 0.6615 36 1 9.2721 4.0010 -0.9604 37 1 9.6167 4.2571 0.7825 38 1 10.9464 2.3310 -0.7339 39 1 10.6447 2.1346 1.0177 40 1 9.4288 0.5269 -2.3020 41 1 10.9569 -1.6997 -4.2602 42 1 6.5121 0.5545 0.5103 43 1 6.1825 0.6683 -1.2461 44 1 5.3129 -0.1054 0.0090 45 1 3.9652 -2.1658 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026382713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:25 Heat of formation + Delta-G solvation = 47.133224 kcal Electronic energy + Delta-G solvation = -26200.690036 eV Core-core repulsion = 22605.418396 eV Total energy + Delta-G solvation = -3595.271640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12119 -40.06619 -38.51491 -35.54232 -33.86886 -33.07149 -32.51883 -31.01216 -29.62148 -28.81339 -27.79034 -25.65541 -24.81956 -23.28329 -23.09817 -22.25590 -20.37503 -19.85905 -19.16260 -17.41476 -17.24472 -16.83183 -16.05883 -15.95527 -15.49982 -15.22927 -14.84939 -14.55906 -14.45862 -14.03000 -13.86885 -13.70026 -13.36401 -13.01114 -12.73718 -12.58852 -12.51538 -12.46803 -12.15894 -11.83941 -11.59611 -11.33386 -11.06294 -10.88015 -10.84138 -10.55198 -10.28022 -10.26200 -10.17076 -10.00786 -9.85460 -9.65771 -9.53504 -9.13943 -8.99708 -8.79120 -7.06417 -5.85451 -3.15107 0.58539 0.91695 2.65379 2.76742 3.37756 3.43980 3.46039 3.66934 3.94987 4.09479 4.29726 4.50302 4.54810 4.78287 4.81218 4.85242 4.92848 5.12847 5.22032 5.25339 5.31842 5.35314 5.43047 5.46438 5.48620 5.53461 5.55996 5.66749 5.72256 5.80536 5.84472 5.86787 5.88560 5.97586 6.00535 6.01364 6.24422 6.27505 6.38749 6.46674 6.54704 6.70452 6.95784 7.31565 7.63455 7.76685 7.94907 8.32439 9.44279 9.99674 10.34080 11.36811 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.003638 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.440608 B = 7695.264414 C = 9508.089861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.118 3.882 3 C -0.118 4.118 4 C -0.080 4.080 5 C 0.574 3.426 6 O -0.539 6.539 7 N -0.615 5.615 8 C 0.126 3.874 9 C -0.125 4.125 10 H 0.088 0.912 11 C -0.100 4.100 12 C -0.144 4.144 13 C 0.200 3.800 14 H 0.057 0.943 15 N -0.720 5.720 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.126 4.126 25 H 0.079 0.921 26 C 0.115 3.885 27 C -0.175 4.175 28 C 0.102 3.898 29 N -0.472 5.472 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.171 0.829 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.722 6.361 8.307 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.020 4.020 3 C -0.139 4.139 4 C -0.091 4.091 5 C 0.363 3.637 6 O -0.417 6.417 7 N -0.349 5.349 8 C 0.005 3.995 9 C -0.145 4.145 10 H 0.106 0.894 11 C -0.139 4.139 12 C -0.185 4.185 13 C 0.088 3.912 14 H 0.075 0.925 15 N -0.360 5.360 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.146 4.146 25 H 0.097 0.903 26 C -0.006 4.006 27 C -0.194 4.194 28 C -0.055 4.055 29 N -0.183 5.183 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.188 0.812 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.481 6.012 8.416 17.795 hybrid contribution 1.202 -0.031 -0.313 1.242 sum -13.279 5.981 8.104 16.667 Atomic orbital electron populations 1.20713 0.88417 1.03639 1.03204 1.21284 0.97249 0.87862 0.95582 1.22071 0.93210 0.99981 0.98625 1.20282 0.94240 0.93533 1.01064 1.17845 0.80566 0.88393 0.76914 1.90758 1.68982 1.31221 1.50777 1.49738 1.04956 1.09824 1.70368 1.21754 0.88305 0.87677 1.01725 1.22645 0.93809 0.97896 1.00136 0.89413 1.21861 0.93016 0.97888 1.01086 1.23802 0.99071 0.94067 1.01518 1.19942 0.88029 0.91051 0.92161 0.92522 1.42516 1.55866 1.34058 1.03608 1.19276 1.19987 1.05056 0.92984 0.91047 1.24745 1.00911 0.99786 0.95283 1.69663 1.48576 1.42109 0.97555 0.86154 0.80485 0.82452 0.77297 1.20517 1.21837 1.21885 1.22168 0.94061 0.97526 1.00838 0.90290 1.21573 0.90807 0.86794 1.01377 1.23678 1.04524 0.92454 0.98779 1.22844 0.88963 0.98786 0.94862 1.67391 1.10569 1.29425 1.10907 0.90312 0.90559 0.90280 0.83763 0.90734 0.90233 0.91449 0.92054 0.90682 0.92572 0.78148 0.93487 0.90032 0.89690 0.81243 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.17 36.01 0.37 -0.45 16 2 C 0.12 1.35 6.78 -82.63 -0.56 0.79 16 3 C -0.12 -1.44 9.31 -39.02 -0.36 -1.80 16 4 C -0.08 -1.06 5.90 -104.65 -0.62 -1.68 16 5 C 0.57 8.44 7.85 -12.19 -0.10 8.34 16 6 O -0.54 -9.28 16.81 5.35 0.09 -9.19 16 7 N -0.62 -8.20 3.42 -172.42 -0.59 -8.79 16 8 C 0.13 1.55 6.71 -2.93 -0.02 1.53 16 9 C -0.13 -1.51 3.16 -89.33 -0.28 -1.79 16 10 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 11 C -0.10 -1.23 6.61 -25.66 -0.17 -1.40 16 12 C -0.14 -2.21 6.74 -23.33 -0.16 -2.37 16 13 C 0.20 3.42 3.44 -67.96 -0.23 3.19 16 14 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 15 N -0.72 -16.24 5.10 -53.45 -0.27 -16.51 16 16 C -0.24 -6.21 9.96 -15.06 -0.15 -6.36 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 20 Si 0.90 21.39 29.55 -169.99 -5.02 16.36 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.13 -1.78 2.20 -91.23 -0.20 -1.99 16 25 H 0.08 1.23 7.72 -51.93 -0.40 0.83 16 26 C 0.12 1.47 4.73 -4.12 -0.02 1.45 16 27 C -0.18 -2.08 8.76 -39.03 -0.34 -2.42 16 28 C 0.10 1.19 11.17 -17.59 -0.20 0.99 16 29 N -0.47 -5.95 10.25 -9.52 -0.10 -6.05 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.62 7.76 -52.49 -0.41 1.21 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.33 7.98 -51.93 -0.41 0.92 16 39 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.38 9.36 7.65 -40.82 -0.31 9.05 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.08 0.95 6.58 -51.93 -0.34 0.61 16 43 H 0.09 1.11 7.11 -51.93 -0.37 0.74 16 44 H 0.17 1.87 3.05 -52.48 -0.16 1.71 16 45 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -30.85 361.82 -9.45 -40.30 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.59 Total: 8.80 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -3.14 Total: -4.34 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.24 Total: -57.39 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.85 -9.45 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026382713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.432 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds