Wall clock time and date at job start Tue Mar 31 2020 11:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38165 * 119.55115 * 2 1 4 4 C 1.39805 * 119.00030 * 180.02562 * 3 2 1 5 5 C 1.48147 * 120.92236 * 180.02562 * 4 3 2 6 6 O 1.21513 * 120.00263 * 6.33404 * 5 4 3 7 7 N 1.34774 * 119.99961 * 186.33651 * 5 4 3 8 8 C 1.49622 * 126.07440 * 183.67799 * 7 5 4 9 9 C 1.51760 * 102.37732 * 154.30621 * 8 7 5 10 10 H 1.09000 * 111.31270 * 288.39789 * 9 8 7 11 11 C 1.51568 * 123.23938 * 151.78721 * 9 8 7 12 12 C 1.56338 * 101.81095 * 208.16844 * 11 9 8 13 13 C 1.55996 * 105.77286 * 25.43102 * 12 11 9 14 14 H 1.08996 * 110.52752 * 248.33194 * 13 12 11 15 15 N 1.46503 * 110.52287 * 125.58626 * 13 12 11 16 16 C 1.36932 * 119.99999 * 90.43454 * 15 13 12 17 17 H 1.08001 * 120.00039 * 0.02562 * 16 15 13 18 18 C 1.38817 * 120.00177 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99825 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00153 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46963 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47060 * 120.00062 * 20 18 16 23 23 H 1.48499 * 109.47079 * 240.00297 * 20 18 16 24 24 C 1.49705 * 103.98895 * 6.96342 * 13 12 11 25 25 H 1.09006 * 107.88241 * 77.72756 * 24 13 12 26 26 C 1.49298 * 126.07110 * 3.99475 * 7 5 4 27 27 C 1.39833 * 118.14925 * 359.73527 * 4 3 2 28 28 C 1.38126 * 119.00793 * 0.50803 * 27 4 3 29 29 N 1.31796 * 119.54946 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47052 * 270.02061 * 1 2 3 31 31 H 1.08997 * 109.47307 * 30.01792 * 1 2 3 32 32 H 1.09002 * 109.47571 * 150.01883 * 1 2 3 33 33 H 1.08001 * 120.50154 * 359.97438 * 3 2 1 34 34 H 1.08996 * 110.80431 * 272.63419 * 8 7 5 35 35 H 1.08999 * 110.80487 * 36.13370 * 8 7 5 36 36 H 1.09007 * 110.95687 * 326.29253 * 11 9 8 37 37 H 1.09000 * 110.96238 * 89.99595 * 11 9 8 38 38 H 1.08994 * 110.18857 * 144.51563 * 12 11 9 39 39 H 1.09008 * 110.18474 * 266.35554 * 12 11 9 40 40 H 0.97007 * 119.99942 * 270.42957 * 15 13 12 41 41 H 0.96999 * 119.99700 * 180.02562 * 19 18 16 42 42 H 1.09005 * 110.39249 * 292.37143 * 26 7 5 43 43 H 1.08999 * 110.39553 * 54.77225 * 26 7 5 44 44 H 1.08008 * 120.49814 * 180.28489 * 27 4 3 45 45 H 1.07999 * 119.55671 * 179.75522 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2019 0.0000 4 6 3.5864 1.1885 -0.0005 5 6 4.3599 2.4520 0.0000 6 8 3.7852 3.5162 0.1170 7 7 5.7011 2.4211 -0.1294 8 6 6.6193 3.6009 -0.0694 9 6 7.9258 2.9737 0.3811 10 1 7.8787 2.6679 1.4263 11 6 9.2856 3.5429 0.0287 12 6 10.1813 2.2615 0.0392 13 6 9.2201 1.0698 -0.2599 14 1 9.1146 0.4340 0.6191 15 7 9.7061 0.2923 -1.4025 16 6 10.5518 -0.7656 -1.2008 17 1 10.8602 -1.0271 -0.1993 18 6 11.0119 -1.5027 -2.2834 19 7 10.6357 -1.1844 -3.5038 20 14 12.1650 -2.9464 -2.0081 21 1 12.4341 -3.0948 -0.5552 22 1 11.5356 -4.1881 -2.5248 23 1 13.4424 -2.7033 -2.7253 24 6 7.9175 1.7296 -0.5900 25 1 7.9827 2.1073 -1.6105 26 6 6.5338 1.2045 -0.3645 27 6 4.2342 -0.0507 0.0046 28 6 3.4741 -1.2040 -0.0007 29 7 2.1570 -1.1465 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6493 2.1377 -0.0004 34 1 6.7261 4.0588 -1.0528 35 1 6.2673 4.3288 0.6615 36 1 9.2721 4.0010 -0.9604 37 1 9.6167 4.2571 0.7825 38 1 10.9464 2.3310 -0.7339 39 1 10.6447 2.1346 1.0177 40 1 9.4288 0.5269 -2.3020 41 1 10.9569 -1.6997 -4.2602 42 1 6.5121 0.5545 0.5103 43 1 6.1825 0.6683 -1.2461 44 1 5.3129 -0.1054 0.0090 45 1 3.9652 -2.1658 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026382713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:24 Heat of formation + Delta-G solvation = 28.616277 kcal Electronic energy + Delta-G solvation = -26201.492991 eV Core-core repulsion = 22605.418396 eV Total energy + Delta-G solvation = -3596.074596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17663 -41.07872 -39.66881 -36.89736 -35.32533 -34.16762 -33.43260 -32.62229 -30.82759 -30.04236 -28.63834 -27.09267 -25.88020 -24.85280 -24.21355 -23.26982 -21.50295 -20.90962 -20.41037 -19.11443 -18.39054 -17.94838 -17.13442 -16.98036 -16.66584 -16.49185 -16.13912 -15.58430 -15.47659 -15.40785 -15.33816 -14.85958 -14.44471 -14.24176 -13.97687 -13.72397 -13.35166 -13.20611 -13.15796 -13.11227 -13.06397 -12.75883 -12.53443 -12.29926 -12.17696 -12.03812 -11.78531 -11.61920 -11.41376 -11.36375 -11.01934 -10.96572 -10.88154 -10.49347 -10.02143 -9.86944 -8.95330 -7.90041 -5.17332 -0.39883 0.02556 1.50386 1.51824 1.58521 1.60545 1.69913 2.59804 2.73601 2.86217 3.23572 3.30604 3.45593 3.61250 3.68583 3.80904 3.90351 3.99229 4.03331 4.19395 4.24183 4.36427 4.43477 4.45732 4.52593 4.56585 4.66229 4.66919 4.70169 4.74983 4.77577 4.84577 4.86992 4.92955 4.97210 5.05249 5.13783 5.17104 5.22116 5.37948 5.50353 5.53516 5.60434 5.66000 6.21344 6.32341 6.83098 6.87213 7.39195 8.15264 8.37043 9.33407 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.003638 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.440608 B = 7695.264414 C = 9508.089861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.115 3.885 3 C -0.125 4.125 4 C -0.096 4.096 5 C 0.572 3.428 6 O -0.570 6.570 7 N -0.612 5.612 8 C 0.125 3.875 9 C -0.105 4.105 10 H 0.100 0.900 11 C -0.089 4.089 12 C -0.139 4.139 13 C 0.193 3.807 14 H 0.059 0.941 15 N -0.732 5.732 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.075 4.075 19 N -0.970 5.970 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.297 1.297 23 H -0.300 1.300 24 C -0.124 4.124 25 H 0.063 0.937 26 C 0.119 3.881 27 C -0.175 4.175 28 C 0.097 3.903 29 N -0.489 5.489 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.372 0.628 41 H 0.248 0.752 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.177 0.823 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.294 6.569 10.110 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.023 4.023 3 C -0.146 4.146 4 C -0.107 4.107 5 C 0.362 3.638 6 O -0.450 6.450 7 N -0.345 5.345 8 C 0.004 3.996 9 C -0.124 4.124 10 H 0.118 0.882 11 C -0.128 4.128 12 C -0.179 4.179 13 C 0.084 3.916 14 H 0.077 0.923 15 N -0.371 5.371 16 C -0.362 4.362 17 H 0.096 0.904 18 C -0.267 4.267 19 N -0.621 5.621 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.224 1.224 23 H -0.227 1.227 24 C -0.144 4.144 25 H 0.081 0.919 26 C -0.001 4.001 27 C -0.194 4.194 28 C -0.059 4.059 29 N -0.200 5.200 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.168 0.832 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.194 0.806 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.047 6.238 10.279 19.260 hybrid contribution 1.348 -0.054 -0.816 1.577 sum -13.698 6.184 9.462 17.760 Atomic orbital electron populations 1.20817 0.86067 1.04583 1.04344 1.21792 0.98832 0.87265 0.94397 1.22225 0.93001 1.00616 0.98748 1.20325 0.94759 0.93318 1.02256 1.18077 0.80818 0.88517 0.76401 1.90734 1.69539 1.32314 1.52439 1.49743 1.04814 1.10301 1.69639 1.21826 0.88040 0.87572 1.02113 1.22565 0.93608 0.96184 1.00069 0.88176 1.21787 0.92167 0.96770 1.02030 1.23623 0.98436 0.94775 1.01101 1.20170 0.89732 0.91300 0.90409 0.92267 1.42701 1.55665 1.34150 1.04571 1.19646 1.18756 1.04827 0.92956 0.90377 1.25446 1.03279 1.02669 0.95285 1.69808 1.50593 1.43518 0.98163 0.85206 0.78215 0.79457 0.77708 1.18882 1.22438 1.22743 1.21959 0.93528 0.98313 1.00632 0.91876 1.21560 0.89781 0.86759 1.02025 1.23713 1.04797 0.92128 0.98797 1.23228 0.88927 0.99595 0.94154 1.67478 1.11043 1.29985 1.11489 0.88946 0.88938 0.90016 0.83235 0.90635 0.89481 0.91571 0.89421 0.93479 0.91303 0.79580 0.94303 0.88338 0.90110 0.80637 0.79782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.17 71.24 0.72 -0.71 16 2 C 0.11 2.48 6.78 42.55 0.29 2.77 16 3 C -0.13 -2.94 9.31 22.63 0.21 -2.73 16 4 C -0.10 -2.45 5.90 -19.88 -0.12 -2.57 16 5 C 0.57 16.37 7.85 86.88 0.68 17.05 16 6 O -0.57 -19.29 16.81 -3.75 -0.06 -19.36 16 7 N -0.61 -15.51 3.42 -817.72 -2.80 -18.31 16 8 C 0.13 2.84 6.71 85.36 0.57 3.41 16 9 C -0.10 -2.26 3.16 -9.96 -0.03 -2.29 16 10 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 11 C -0.09 -1.96 6.61 31.29 0.21 -1.75 16 12 C -0.14 -4.05 6.74 32.79 0.22 -3.83 16 13 C 0.19 6.41 3.44 44.97 0.15 6.56 16 14 H 0.06 1.94 8.09 -2.39 -0.02 1.92 16 15 N -0.73 -33.06 5.10 -323.03 -1.65 -34.71 16 16 C -0.23 -11.73 9.96 84.04 0.84 -10.90 16 17 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 18 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 19 N -0.97 -56.96 13.06 21.65 0.28 -56.68 16 20 Si 0.96 44.20 29.55 68.60 2.03 46.23 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 24 C -0.12 -3.37 2.20 -11.19 -0.02 -3.40 16 25 H 0.06 1.94 7.72 -2.38 -0.02 1.93 16 26 C 0.12 2.90 4.73 84.78 0.40 3.30 16 27 C -0.18 -3.97 8.76 22.63 0.20 -3.77 16 28 C 0.10 2.14 11.17 84.67 0.95 3.09 16 29 N -0.49 -11.70 10.25 -184.05 -1.89 -13.59 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.15 3.26 7.76 -2.91 -0.02 3.24 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 1.90 8.11 -2.39 -0.02 1.88 16 36 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.65 7.98 -2.39 -0.02 1.63 16 39 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.37 18.51 7.65 -92.70 -0.71 17.80 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.10 2.09 6.58 -2.38 -0.02 2.07 16 43 H 0.08 2.06 7.11 -2.39 -0.02 2.04 16 44 H 0.18 3.64 3.05 -2.91 -0.01 3.63 16 45 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -66.48 361.82 1.95 -64.53 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.30 Total: 31.26 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 5.74 Total: 0.63 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -6.05 Total: -123.29 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.06 Total: -19.36 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.48 1.95 -64.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026382713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.142 kcal (2) G-P(sol) polarization free energy of solvation -66.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds