Wall clock time and date at job start Tue Mar 31 2020 10:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38144 * 119.55083 * 2 1 4 4 C 1.39819 * 119.00018 * 179.97438 * 3 2 1 5 5 C 1.48147 * 120.92123 * 179.97438 * 4 3 2 6 6 O 1.21518 * 120.00179 * 316.63853 * 5 4 3 7 7 N 1.34779 * 120.00233 * 136.64809 * 5 4 3 8 8 C 1.47165 * 120.71234 * 184.19202 * 7 5 4 9 9 C 1.53883 * 108.02728 * 132.74425 * 8 7 5 10 10 H 1.09004 * 112.57711 * 182.22130 * 9 8 7 11 11 C 1.54132 * 107.71793 * 306.32572 * 9 8 7 12 12 C 1.54280 * 104.89181 * 89.41015 * 11 9 8 13 13 C 1.54554 * 104.84475 * 359.81215 * 12 11 9 14 14 H 1.09000 * 112.17519 * 146.40860 * 13 12 11 15 15 C 1.49243 * 120.76676 * 4.26399 * 7 5 4 16 16 N 1.48305 * 104.35823 * 24.70380 * 13 12 11 17 17 C 1.36931 * 128.07715 * 139.07906 * 16 13 12 18 18 H 1.07999 * 120.00310 * 345.01056 * 17 16 13 19 19 C 1.38819 * 120.00027 * 165.00321 * 17 16 13 20 20 N 1.31613 * 120.00032 * 350.17732 * 19 17 16 21 21 Si 1.86797 * 119.99888 * 170.17258 * 19 17 16 22 22 H 1.48500 * 109.47146 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47471 * 300.00332 * 21 19 17 24 24 H 1.48504 * 109.47041 * 60.00203 * 21 19 17 25 25 C 1.39817 * 118.15677 * 0.25050 * 4 3 2 26 26 C 1.38149 * 118.99495 * 359.48171 * 25 4 3 27 27 C 1.50704 * 119.54775 * 180.27254 * 26 25 4 28 28 N 1.31809 * 119.54806 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46854 * 89.99970 * 1 2 3 30 30 H 1.08998 * 109.47577 * 210.00096 * 1 2 3 31 31 H 1.09004 * 109.47304 * 330.00124 * 1 2 3 32 32 H 1.08001 * 120.50243 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.75051 * 13.11399 * 8 7 5 34 34 H 1.08999 * 109.74982 * 252.37919 * 8 7 5 35 35 H 1.09002 * 110.49702 * 330.47709 * 11 9 8 36 36 H 1.09002 * 110.28073 * 208.23821 * 11 9 8 37 37 H 1.09000 * 110.36454 * 240.97132 * 12 11 9 38 38 H 1.08997 * 110.36398 * 118.65372 * 12 11 9 39 39 H 1.08999 * 110.51568 * 107.82770 * 15 7 5 40 40 H 1.09004 * 109.75022 * 346.60502 * 15 7 5 41 41 H 0.96999 * 120.00231 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.50052 * 179.72685 * 25 4 3 43 43 H 1.08996 * 109.47366 * 270.25566 * 27 26 25 44 44 H 1.09004 * 109.47251 * 30.25973 * 27 26 25 45 45 H 1.09006 * 109.46985 * 150.26132 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2017 0.0000 4 6 3.5865 1.1883 0.0005 5 6 4.3599 2.4518 0.0000 6 8 4.0249 3.3690 -0.7233 7 7 5.4353 2.5841 0.8016 8 6 6.1602 3.8623 0.8819 9 6 6.3870 4.1885 2.3686 10 1 6.8874 5.1457 2.5154 11 6 5.0179 4.1355 3.0746 12 6 4.8629 2.6696 3.5297 13 6 6.1542 1.9678 3.0514 14 1 6.4717 1.1801 3.7346 15 6 5.9186 1.4377 1.6260 16 7 7.1520 3.0607 2.9536 17 6 8.4704 3.0360 3.3229 18 1 8.8389 2.2430 3.9567 19 6 9.3333 4.0301 2.8823 20 7 8.9390 4.8830 1.9607 21 14 11.0542 4.1576 3.5977 22 1 11.7703 5.2944 2.9652 23 1 10.9658 4.3826 5.0629 24 1 11.7944 2.8974 3.3342 25 6 4.2344 -0.0507 -0.0043 26 6 3.4739 -1.2040 0.0015 27 6 4.1594 -2.5462 0.0026 28 7 2.1570 -1.1467 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6492 2.1376 0.0004 33 1 5.5684 4.6512 0.4178 34 1 7.1204 3.7738 0.3736 35 1 4.2204 4.4038 2.3815 36 1 5.0110 4.8030 3.9363 37 1 3.9893 2.2171 3.0605 38 1 4.7819 2.6160 4.6153 39 1 6.8502 1.0422 1.2215 40 1 5.1621 0.6531 1.6453 41 1 9.5418 5.5779 1.6532 42 1 5.3130 -0.1052 -0.0085 43 1 4.3251 -2.8704 -1.0248 44 1 5.1171 -2.4647 0.5168 45 1 3.5318 -3.2743 0.5166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029325106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:58 Heat of formation + Delta-G solvation = 24.296445 kcal Electronic energy + Delta-G solvation = -27450.353491 eV Core-core repulsion = 23854.091573 eV Total energy + Delta-G solvation = -3596.261918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10203 -40.90089 -39.33865 -35.64350 -34.70200 -34.31248 -33.82195 -32.14582 -31.08004 -29.97452 -28.15213 -27.80036 -26.00908 -25.50962 -24.24700 -22.87498 -21.33892 -21.25895 -20.33455 -18.80820 -18.02058 -17.58037 -17.16543 -16.92291 -16.64370 -16.48603 -15.73892 -15.55912 -15.24277 -15.05962 -14.73131 -14.54370 -14.37681 -14.13762 -14.04186 -13.58494 -13.38910 -13.31152 -13.19370 -12.95037 -12.89939 -12.76381 -12.72778 -12.65739 -12.56002 -12.04814 -11.88877 -11.57321 -11.51703 -11.34116 -11.18853 -10.83635 -10.73465 -10.41256 -9.88169 -9.73448 -8.74631 -7.85710 -5.21550 -0.23466 0.01911 1.50097 1.51925 1.57816 1.60058 1.90115 2.50866 2.65812 3.18672 3.21858 3.34609 3.46278 3.69287 3.89911 3.97009 4.04158 4.07182 4.19036 4.27079 4.31964 4.36092 4.45601 4.55047 4.58020 4.66348 4.76657 4.78995 4.79861 4.84895 4.92186 4.97827 5.02680 5.03206 5.05468 5.09830 5.17324 5.20536 5.26318 5.33913 5.49722 5.55410 5.66110 5.77166 6.20286 6.39175 6.92118 6.98942 7.04697 7.71876 8.50297 9.25987 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003977 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.375273 B = 7039.005915 C = 7497.588308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.130 3.870 3 C -0.142 4.142 4 C -0.077 4.077 5 C 0.548 3.452 6 O -0.585 6.585 7 N -0.582 5.582 8 C 0.128 3.872 9 C 0.168 3.832 10 H 0.081 0.919 11 C -0.129 4.129 12 C -0.111 4.111 13 C 0.127 3.873 14 H 0.097 0.903 15 C 0.092 3.908 16 N -0.602 5.602 17 C -0.234 4.234 18 H 0.084 0.916 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.301 1.301 23 H -0.281 1.281 24 H -0.278 1.278 25 C -0.156 4.156 26 C 0.131 3.869 27 C -0.102 4.102 28 N -0.487 5.487 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.143 0.857 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.247 0.753 42 H 0.151 0.849 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 -13.274 -0.642 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.008 4.008 3 C -0.162 4.162 4 C -0.088 4.088 5 C 0.337 3.663 6 O -0.467 6.467 7 N -0.312 5.312 8 C 0.004 3.996 9 C 0.060 3.940 10 H 0.099 0.901 11 C -0.168 4.168 12 C -0.150 4.150 13 C 0.020 3.980 14 H 0.115 0.885 15 C -0.031 4.031 16 N -0.323 5.323 17 C -0.362 4.362 18 H 0.101 0.899 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.801 3.199 22 H -0.228 1.228 23 H -0.208 1.208 24 H -0.204 1.204 25 C -0.177 4.177 26 C -0.007 4.007 27 C -0.159 4.159 28 N -0.199 5.199 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.160 0.840 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.056 0.944 42 H 0.169 0.831 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.963 -13.442 -0.999 19.408 hybrid contribution 1.893 1.718 -0.099 2.558 sum -12.070 -11.724 -1.099 16.863 Atomic orbital electron populations 1.20813 0.85920 1.04710 1.04258 1.21693 0.98666 0.86940 0.93477 1.22090 0.92508 1.00694 1.00956 1.20248 0.94894 0.93076 1.00537 1.18701 0.80489 0.87333 0.79819 1.90721 1.70445 1.42872 1.42668 1.48657 1.27333 1.13761 1.41497 1.22047 0.93952 0.83738 0.99867 1.21602 0.89597 0.93681 0.89110 0.90076 1.22463 0.97180 0.97635 0.99526 1.22394 0.97033 0.94850 1.00715 1.22227 0.89686 0.92084 0.93986 0.88513 1.23331 0.99596 0.87631 0.92539 1.45324 1.05825 1.08357 1.72841 1.19285 0.83691 1.09876 1.23395 0.89861 1.25526 1.01167 0.99576 0.98513 1.70024 1.36599 1.20357 1.31549 0.85272 0.80194 0.76781 0.77702 1.22761 1.20777 1.20361 1.22367 1.02278 0.91372 1.01641 1.21707 0.89039 0.96573 0.93350 1.20841 1.00496 0.90301 1.04283 1.67351 1.10029 1.29614 1.12904 0.89150 0.89562 0.89056 0.83957 0.92369 0.93587 0.92842 0.92405 0.91487 0.90983 0.91640 0.87301 0.94384 0.83123 0.89189 0.88775 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.17 71.24 0.72 -0.74 16 2 C 0.13 2.91 6.78 42.54 0.29 3.20 16 3 C -0.14 -3.70 9.43 22.63 0.21 -3.49 16 4 C -0.08 -2.28 5.24 -19.88 -0.10 -2.38 16 5 C 0.55 20.49 7.38 86.88 0.64 21.13 16 6 O -0.59 -26.00 16.48 -3.77 -0.06 -26.06 16 7 N -0.58 -22.13 2.28 -812.60 -1.86 -23.99 16 8 C 0.13 5.81 5.78 86.55 0.50 6.31 16 9 C 0.17 7.68 3.10 45.32 0.14 7.82 16 10 H 0.08 4.33 6.40 -2.38 -0.02 4.31 16 11 C -0.13 -4.86 6.16 31.41 0.19 -4.67 16 12 C -0.11 -3.59 6.19 31.56 0.20 -3.39 16 13 C 0.13 4.52 4.27 45.47 0.19 4.72 16 14 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 15 C 0.09 3.00 4.60 86.15 0.40 3.39 16 16 N -0.60 -27.69 2.80 -637.46 -1.79 -29.47 16 17 C -0.23 -11.90 10.37 84.04 0.87 -11.03 16 18 H 0.08 4.03 7.85 -2.91 -0.02 4.00 16 19 C -0.05 -2.82 5.41 84.86 0.46 -2.36 16 20 N -0.94 -52.73 10.41 21.65 0.23 -52.51 16 21 Si 0.97 43.42 29.56 68.60 2.03 45.44 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 C -0.16 -3.86 7.08 22.63 0.16 -3.70 16 26 C 0.13 2.86 6.78 42.54 0.29 3.14 16 27 C -0.10 -1.48 10.16 71.24 0.72 -0.75 16 28 N -0.49 -11.42 10.16 -172.23 -1.75 -13.17 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.07 8.08 -2.38 -0.02 1.05 16 32 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 33 H 0.06 2.71 7.15 -2.39 -0.02 2.70 16 34 H 0.05 2.41 7.79 -2.39 -0.02 2.39 16 35 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 1.97 7.86 -2.39 -0.02 1.95 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.11 2.86 4.63 -2.38 -0.01 2.85 16 41 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.15 3.45 6.47 -2.91 -0.02 3.43 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 45 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -65.98 355.55 3.68 -62.30 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.99 Total: 20.27 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 5.89 Total: 17.18 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -5.17 Total: -119.14 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.06 Total: -26.06 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -65.98 3.68 -62.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029325106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.598 kcal (2) G-P(sol) polarization free energy of solvation -65.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds