Wall clock time and date at job start Tue Mar 31 2020 11:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38149 * 120.49607 * 2 1 4 4 N 1.31820 * 120.89213 * 180.28779 * 3 2 1 5 5 C 1.31806 * 122.04819 * 359.74801 * 4 3 2 6 6 C 1.38148 * 120.90190 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.50255 * 180.02562 * 6 5 4 8 8 C 1.39817 * 118.99874 * 359.97438 * 6 5 4 9 9 C 1.48152 * 120.92465 * 179.97438 * 8 6 5 10 10 O 1.21513 * 119.99851 * 82.99611 * 9 8 6 11 11 N 1.34769 * 119.99942 * 263.00091 * 9 8 6 12 12 C 1.47167 * 120.71200 * 5.23146 * 11 9 8 13 13 C 1.55894 * 107.94996 * 132.40754 * 12 11 9 14 14 H 1.09002 * 112.45329 * 181.84373 * 13 12 11 15 15 C 1.54540 * 108.44494 * 307.13466 * 13 12 11 16 16 C 1.53732 * 104.95450 * 88.28688 * 15 13 12 17 17 C 1.54543 * 104.95594 * 359.97438 * 16 15 13 18 18 H 1.09001 * 112.18167 * 146.28326 * 17 16 15 19 19 C 1.47165 * 120.71000 * 185.20769 * 11 9 8 20 20 N 1.48310 * 106.17548 * 58.78514 * 13 12 11 21 21 C 1.36939 * 128.07904 * 106.44012 * 20 13 12 22 22 H 1.08001 * 119.99739 * 164.77204 * 21 20 13 23 23 C 1.38805 * 119.99695 * 344.77692 * 21 20 13 24 24 N 1.31623 * 120.00458 * 351.09449 * 23 21 20 25 25 Si 1.86803 * 119.99873 * 171.09300 * 23 21 20 26 26 H 1.48503 * 109.47221 * 269.99858 * 25 23 21 27 27 H 1.48499 * 109.47057 * 29.99714 * 25 23 21 28 28 H 1.48503 * 109.47444 * 149.99744 * 25 23 21 29 29 H 1.09000 * 109.47339 * 270.19634 * 1 2 3 30 30 H 1.09001 * 109.47385 * 30.19893 * 1 2 3 31 31 H 1.09004 * 109.47247 * 150.19785 * 1 2 3 32 32 H 1.07994 * 119.55381 * 0.03506 * 3 2 1 33 33 H 1.08002 * 119.55114 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.46989 * 275.50999 * 7 6 5 35 35 H 1.09000 * 109.47231 * 35.50766 * 7 6 5 36 36 H 1.08993 * 109.47155 * 155.51242 * 7 6 5 37 37 H 1.09001 * 109.75118 * 252.36950 * 12 11 9 38 38 H 1.08997 * 109.75126 * 13.10335 * 12 11 9 39 39 H 1.08996 * 110.36406 * 207.00448 * 15 13 12 40 40 H 1.08994 * 110.36362 * 329.21135 * 15 13 12 41 41 H 1.08999 * 110.42207 * 241.06613 * 16 15 13 42 42 H 1.09005 * 110.20676 * 118.82167 * 16 15 13 43 43 H 1.09000 * 109.74558 * 107.62974 * 19 11 9 44 44 H 1.09000 * 109.78637 * 346.92220 * 19 11 9 45 45 H 0.96993 * 120.00002 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1904 0.0000 4 7 3.5262 1.1995 -0.0057 5 6 4.2333 0.0872 -0.0067 6 6 3.6136 -1.1475 -0.0022 7 6 4.4309 -2.4136 -0.0028 8 6 2.2166 -1.2047 0.0039 9 6 1.5079 -2.5057 0.0082 10 8 1.3345 -3.0996 1.0540 11 7 1.0557 -3.0305 -1.1478 12 6 1.3558 -2.3837 -2.4351 13 6 1.8563 -3.4834 -3.4203 14 1 2.1316 -3.0765 -4.3933 15 6 3.0149 -4.2527 -2.7465 16 6 2.3348 -5.3851 -1.9600 17 6 0.8232 -5.2028 -2.2252 18 1 0.2939 -6.1550 -2.2607 19 6 0.2515 -4.2631 -1.1498 20 7 0.7616 -4.4792 -3.5186 21 6 -0.1008 -4.6859 -4.5620 22 1 -0.6852 -5.5930 -4.6079 23 6 -0.2238 -3.7297 -5.5606 24 7 0.3502 -2.5536 -5.4200 25 14 -1.2039 -4.1120 -7.1042 26 1 -0.3052 -4.7052 -8.1270 27 1 -2.2859 -5.0752 -6.7777 28 1 -1.7996 -2.8597 -7.6353 29 1 -0.3634 0.0035 1.0276 30 1 -0.3634 0.8882 -0.5169 31 1 -0.3634 -0.8918 -0.5108 32 1 1.6689 2.1261 0.0006 33 1 5.3120 0.1417 -0.0118 34 1 4.7073 -2.6672 -1.0263 35 1 5.3329 -2.2641 0.5906 36 1 3.8438 -3.2252 0.4266 37 1 0.4559 -1.9109 -2.8285 38 1 2.1361 -1.6350 -2.2981 39 1 3.6840 -4.6672 -3.5005 40 1 3.5647 -3.5962 -2.0723 41 1 2.5470 -5.2892 -0.8952 42 1 2.6708 -6.3542 -2.3288 43 1 -0.7865 -4.0252 -1.3824 44 1 0.3094 -4.7430 -0.1729 45 1 0.2639 -1.8853 -6.1177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029391032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:08 Heat of formation + Delta-G solvation = 33.552453 kcal Electronic energy + Delta-G solvation = -28271.062001 eV Core-core repulsion = 24675.201454 eV Total energy + Delta-G solvation = -3595.860547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.87566 -39.47089 -37.73478 -33.99406 -33.68521 -33.35147 -32.45446 -30.55202 -29.34650 -27.91106 -27.22274 -26.32570 -24.38409 -23.81465 -23.14889 -21.23873 -20.17377 -19.70682 -18.75032 -17.68828 -16.99291 -16.20105 -15.92910 -15.28463 -14.84903 -14.53514 -14.40792 -14.33201 -13.85156 -13.62913 -13.26603 -13.13254 -13.02679 -12.95452 -12.78106 -12.53948 -12.43853 -12.21373 -11.84714 -11.74197 -11.66693 -11.37687 -11.12629 -10.93492 -10.84672 -10.45205 -10.14118 -9.98709 -9.88313 -9.69905 -9.64618 -9.42979 -9.19008 -8.84262 -8.75128 -8.17881 -6.91878 -5.91761 -3.26904 1.10195 1.10585 2.85074 3.31120 3.37134 3.38591 3.41531 3.76431 4.35620 4.42103 4.66417 4.75656 4.75946 5.00777 5.10911 5.21305 5.26178 5.42121 5.55494 5.59645 5.61898 5.64180 5.65999 5.67754 5.72976 5.82571 5.91358 5.95980 6.02886 6.11854 6.14569 6.25143 6.25509 6.33612 6.48146 6.52066 6.56909 6.65455 6.69341 6.82428 6.86811 7.16513 7.38790 7.58807 7.91226 7.95781 8.05958 8.47740 8.98412 9.60469 10.36540 11.21287 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.005073 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.811189 B = 5518.373123 C = 6042.581087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.100 4.100 3 C 0.090 3.910 4 N -0.474 5.474 5 C 0.089 3.911 6 C -0.100 4.100 7 C -0.120 4.120 8 C -0.066 4.066 9 C 0.557 3.443 10 O -0.553 6.553 11 N -0.579 5.579 12 C 0.107 3.893 13 C 0.170 3.830 14 H 0.121 0.879 15 C -0.140 4.140 16 C -0.123 4.123 17 C 0.134 3.866 18 H 0.078 0.922 19 C 0.101 3.899 20 N -0.584 5.584 21 C -0.225 4.225 22 H 0.077 0.923 23 C -0.002 4.002 24 N -0.915 5.915 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.281 1.281 28 H -0.291 1.291 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 3.123 8.673 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.102 4.102 3 C -0.067 4.067 4 N -0.181 5.181 5 C -0.068 4.068 6 C -0.103 4.103 7 C -0.177 4.177 8 C -0.077 4.077 9 C 0.344 3.656 10 O -0.433 6.433 11 N -0.310 5.310 12 C -0.017 4.017 13 C 0.062 3.938 14 H 0.139 0.861 15 C -0.179 4.179 16 C -0.162 4.162 17 C 0.026 3.974 18 H 0.096 0.904 19 C -0.023 4.023 20 N -0.305 5.305 21 C -0.353 4.353 22 H 0.095 0.905 23 C -0.199 4.199 24 N -0.561 5.561 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.207 1.207 28 H -0.217 1.217 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.543 3.695 8.927 11.139 hybrid contribution -0.988 -0.773 -0.862 1.522 sum 4.555 2.922 8.065 9.712 Atomic orbital electron populations 1.20808 0.89836 1.03950 1.02785 1.20951 0.97689 0.92700 0.98894 1.22539 0.89795 0.97080 0.97247 1.67500 1.08226 1.31446 1.10946 1.22528 1.00163 0.86729 0.97362 1.20925 0.92759 0.97538 0.99029 1.20909 0.99427 0.94149 1.03166 1.20174 0.93677 0.94063 0.99819 1.18145 0.79045 0.84335 0.84086 1.90738 1.59364 1.61687 1.31502 1.48219 1.50511 1.25855 1.06370 1.22974 1.00937 0.95930 0.81845 1.22286 0.85847 0.88481 0.97219 0.86122 1.22631 0.98805 0.97754 0.98742 1.22372 0.96700 0.98378 0.98790 1.21961 0.94146 0.94543 0.86780 0.90363 1.22418 0.94415 0.85329 1.00159 1.45196 1.34592 1.38510 1.12217 1.19020 1.16681 1.01354 0.98257 0.90534 1.24814 1.00322 0.95145 0.99664 1.69807 1.48112 1.04379 1.33823 0.86119 0.79432 0.77069 0.83100 1.21575 1.20659 1.21718 0.90623 0.90526 0.90796 0.82506 0.82515 0.89904 0.90738 0.90853 0.89815 0.92728 0.92662 0.92683 0.92663 0.92606 0.91648 0.90554 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.67 36.01 0.35 -1.20 16 2 C -0.10 -1.47 5.93 -104.06 -0.62 -2.08 16 3 C 0.09 1.21 10.86 -17.59 -0.19 1.02 16 4 N -0.47 -6.74 10.33 -13.31 -0.14 -6.88 16 5 C 0.09 1.18 10.88 -17.60 -0.19 0.98 16 6 C -0.10 -1.43 5.84 -104.07 -0.61 -2.04 16 7 C -0.12 -1.49 9.17 36.00 0.33 -1.16 16 8 C -0.07 -1.07 3.73 -104.64 -0.39 -1.46 16 9 C 0.56 10.09 4.43 -12.19 -0.05 10.03 16 10 O -0.55 -11.35 16.39 5.35 0.09 -11.26 16 11 N -0.58 -10.65 2.09 -171.29 -0.36 -11.00 16 12 C 0.11 2.10 5.78 -2.13 -0.01 2.09 16 13 C 0.17 3.58 3.22 -64.58 -0.21 3.37 16 14 H 0.12 2.92 6.33 -51.93 -0.33 2.59 16 15 C -0.14 -2.50 6.19 -25.54 -0.16 -2.66 16 16 C -0.12 -2.13 6.18 -25.54 -0.16 -2.29 16 17 C 0.13 2.57 4.27 -65.68 -0.28 2.29 16 18 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 19 C 0.10 1.88 5.94 -3.25 -0.02 1.86 16 20 N -0.58 -13.24 2.78 -151.42 -0.42 -13.66 16 21 C -0.23 -5.68 10.37 -15.06 -0.16 -5.83 16 22 H 0.08 1.90 7.84 -52.49 -0.41 1.49 16 23 C 0.00 -0.06 5.42 -17.43 -0.09 -0.16 16 24 N -0.91 -23.95 10.40 55.49 0.58 -23.37 16 25 Si 0.91 20.65 29.56 -169.99 -5.03 15.63 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.07 1.14 7.01 -51.93 -0.36 0.78 16 32 H 0.16 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.08 1.00 6.26 -51.93 -0.33 0.67 16 35 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 36 H 0.07 1.06 6.85 -51.93 -0.36 0.71 16 37 H 0.08 1.90 7.85 -51.93 -0.41 1.49 16 38 H 0.05 1.02 6.46 -51.93 -0.34 0.69 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.90 5.24 -51.93 -0.27 0.62 16 41 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.08 1.37 7.08 -51.93 -0.37 1.01 16 45 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -28.58 350.93 -8.96 -37.54 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.51 Total: 4.95 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.46 Total: 2.76 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.34 Total: -54.91 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.58 -8.96 -37.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029391032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.094 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds