Wall clock time and date at job start Tue Mar 31 2020 11:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38149 * 120.49607 * 2 1 4 4 N 1.31820 * 120.89213 * 180.28779 * 3 2 1 5 5 C 1.31806 * 122.04819 * 359.74801 * 4 3 2 6 6 C 1.38148 * 120.90190 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.50255 * 180.02562 * 6 5 4 8 8 C 1.39817 * 118.99874 * 359.97438 * 6 5 4 9 9 C 1.48152 * 120.92465 * 179.97438 * 8 6 5 10 10 O 1.21513 * 119.99851 * 82.99611 * 9 8 6 11 11 N 1.34769 * 119.99942 * 263.00091 * 9 8 6 12 12 C 1.47167 * 120.71200 * 5.23146 * 11 9 8 13 13 C 1.55894 * 107.94996 * 132.40754 * 12 11 9 14 14 H 1.09002 * 112.45329 * 181.84373 * 13 12 11 15 15 C 1.54540 * 108.44494 * 307.13466 * 13 12 11 16 16 C 1.53732 * 104.95450 * 88.28688 * 15 13 12 17 17 C 1.54543 * 104.95594 * 359.97438 * 16 15 13 18 18 H 1.09001 * 112.18167 * 146.28326 * 17 16 15 19 19 C 1.47165 * 120.71000 * 185.20769 * 11 9 8 20 20 N 1.48310 * 106.17548 * 58.78514 * 13 12 11 21 21 C 1.36939 * 128.07904 * 106.44012 * 20 13 12 22 22 H 1.08001 * 119.99739 * 164.77204 * 21 20 13 23 23 C 1.38805 * 119.99695 * 344.77692 * 21 20 13 24 24 N 1.31623 * 120.00458 * 351.09449 * 23 21 20 25 25 Si 1.86803 * 119.99873 * 171.09300 * 23 21 20 26 26 H 1.48503 * 109.47221 * 269.99858 * 25 23 21 27 27 H 1.48499 * 109.47057 * 29.99714 * 25 23 21 28 28 H 1.48503 * 109.47444 * 149.99744 * 25 23 21 29 29 H 1.09000 * 109.47339 * 270.19634 * 1 2 3 30 30 H 1.09001 * 109.47385 * 30.19893 * 1 2 3 31 31 H 1.09004 * 109.47247 * 150.19785 * 1 2 3 32 32 H 1.07994 * 119.55381 * 0.03506 * 3 2 1 33 33 H 1.08002 * 119.55114 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.46989 * 275.50999 * 7 6 5 35 35 H 1.09000 * 109.47231 * 35.50766 * 7 6 5 36 36 H 1.08993 * 109.47155 * 155.51242 * 7 6 5 37 37 H 1.09001 * 109.75118 * 252.36950 * 12 11 9 38 38 H 1.08997 * 109.75126 * 13.10335 * 12 11 9 39 39 H 1.08996 * 110.36406 * 207.00448 * 15 13 12 40 40 H 1.08994 * 110.36362 * 329.21135 * 15 13 12 41 41 H 1.08999 * 110.42207 * 241.06613 * 16 15 13 42 42 H 1.09005 * 110.20676 * 118.82167 * 16 15 13 43 43 H 1.09000 * 109.74558 * 107.62974 * 19 11 9 44 44 H 1.09000 * 109.78637 * 346.92220 * 19 11 9 45 45 H 0.96993 * 120.00002 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1904 0.0000 4 7 3.5262 1.1995 -0.0057 5 6 4.2333 0.0872 -0.0067 6 6 3.6136 -1.1475 -0.0022 7 6 4.4309 -2.4136 -0.0028 8 6 2.2166 -1.2047 0.0039 9 6 1.5079 -2.5057 0.0082 10 8 1.3345 -3.0996 1.0540 11 7 1.0557 -3.0305 -1.1478 12 6 1.3558 -2.3837 -2.4351 13 6 1.8563 -3.4834 -3.4203 14 1 2.1316 -3.0765 -4.3933 15 6 3.0149 -4.2527 -2.7465 16 6 2.3348 -5.3851 -1.9600 17 6 0.8232 -5.2028 -2.2252 18 1 0.2939 -6.1550 -2.2607 19 6 0.2515 -4.2631 -1.1498 20 7 0.7616 -4.4792 -3.5186 21 6 -0.1008 -4.6859 -4.5620 22 1 -0.6852 -5.5930 -4.6079 23 6 -0.2238 -3.7297 -5.5606 24 7 0.3502 -2.5536 -5.4200 25 14 -1.2039 -4.1120 -7.1042 26 1 -0.3052 -4.7052 -8.1270 27 1 -2.2859 -5.0752 -6.7777 28 1 -1.7996 -2.8597 -7.6353 29 1 -0.3634 0.0035 1.0276 30 1 -0.3634 0.8882 -0.5169 31 1 -0.3634 -0.8918 -0.5108 32 1 1.6689 2.1261 0.0006 33 1 5.3120 0.1417 -0.0118 34 1 4.7073 -2.6672 -1.0263 35 1 5.3329 -2.2641 0.5906 36 1 3.8438 -3.2252 0.4266 37 1 0.4559 -1.9109 -2.8285 38 1 2.1361 -1.6350 -2.2981 39 1 3.6840 -4.6672 -3.5005 40 1 3.5647 -3.5962 -2.0723 41 1 2.5470 -5.2892 -0.8952 42 1 2.6708 -6.3542 -2.3288 43 1 -0.7865 -4.0252 -1.3824 44 1 0.3094 -4.7430 -0.1729 45 1 0.2639 -1.8853 -6.1177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029391032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:08 Heat of formation + Delta-G solvation = 18.765811 kcal Electronic energy + Delta-G solvation = -28271.703198 eV Core-core repulsion = 24675.201454 eV Total energy + Delta-G solvation = -3596.501744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.16916 -40.81432 -39.24515 -35.51821 -34.77253 -34.68373 -34.09193 -32.12634 -31.08631 -29.06319 -28.24348 -27.86275 -25.90747 -25.45709 -24.52329 -22.29285 -21.63530 -21.23591 -20.36769 -19.14617 -18.17836 -17.77798 -17.44421 -16.72746 -16.57064 -15.87703 -15.63194 -15.49166 -15.38851 -14.98688 -14.69905 -14.52307 -14.31926 -14.23288 -14.20143 -13.66375 -13.57678 -13.43833 -13.36748 -13.26594 -13.11923 -12.87127 -12.72628 -12.56982 -12.42498 -11.98934 -11.88209 -11.53380 -11.43591 -11.39225 -11.14769 -10.72293 -10.57503 -10.36028 -9.82600 -9.76906 -8.72059 -7.85347 -5.20397 -0.04214 0.05978 1.41759 1.49728 1.51408 1.57965 1.97447 2.50812 2.69163 3.28415 3.34567 3.45852 3.49986 3.70833 3.72957 3.96620 4.05261 4.09502 4.19729 4.20638 4.27227 4.35829 4.38498 4.44448 4.58279 4.58948 4.61538 4.71288 4.73548 4.79470 4.90448 4.98510 5.02189 5.03101 5.07637 5.08724 5.18459 5.19830 5.29489 5.37309 5.53238 5.58523 5.64625 5.78440 6.22015 6.41288 6.91136 7.00669 7.07427 7.71994 8.50757 9.25831 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.005073 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.811189 B = 5518.373123 C = 6042.581087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.111 4.111 3 C 0.091 3.909 4 N -0.485 5.485 5 C 0.092 3.908 6 C -0.106 4.106 7 C -0.116 4.116 8 C -0.095 4.095 9 C 0.567 3.433 10 O -0.578 6.578 11 N -0.578 5.578 12 C 0.131 3.869 13 C 0.165 3.835 14 H 0.088 0.912 15 C -0.131 4.131 16 C -0.112 4.112 17 C 0.130 3.870 18 H 0.086 0.914 19 C 0.106 3.894 20 N -0.602 5.602 21 C -0.233 4.233 22 H 0.076 0.924 23 C -0.049 4.049 24 N -0.933 5.933 25 Si 0.968 3.032 26 H -0.290 1.290 27 H -0.275 1.275 28 H -0.298 1.298 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.186 0.814 33 H 0.191 0.809 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.746 3.414 9.496 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.114 4.114 3 C -0.066 4.066 4 N -0.192 5.192 5 C -0.065 4.065 6 C -0.108 4.108 7 C -0.173 4.173 8 C -0.106 4.106 9 C 0.355 3.645 10 O -0.459 6.459 11 N -0.307 5.307 12 C 0.007 3.993 13 C 0.058 3.942 14 H 0.106 0.894 15 C -0.170 4.170 16 C -0.151 4.151 17 C 0.023 3.977 18 H 0.104 0.896 19 C -0.019 4.019 20 N -0.324 5.324 21 C -0.362 4.362 22 H 0.094 0.906 23 C -0.244 4.244 24 N -0.580 5.580 25 Si 0.798 3.202 26 H -0.218 1.218 27 H -0.200 1.200 28 H -0.225 1.225 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.203 0.797 33 H 0.208 0.792 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.945 3.971 9.772 12.629 hybrid contribution -1.424 -0.844 -1.063 1.967 sum 5.521 3.127 8.709 10.775 Atomic orbital electron populations 1.20799 0.89359 1.03602 1.03271 1.21150 0.98243 0.92811 0.99164 1.22961 0.89806 0.97635 0.96152 1.67593 1.08550 1.31932 1.11127 1.23047 1.01658 0.85874 0.95891 1.21188 0.92080 0.98885 0.98677 1.20928 1.00005 0.92512 1.03853 1.20210 0.94800 0.93293 1.02277 1.18385 0.78217 0.84705 0.83183 1.90713 1.60363 1.62697 1.32168 1.48134 1.50637 1.25770 1.06196 1.22512 0.99358 0.95480 0.81982 1.22207 0.86815 0.88870 0.96338 0.89413 1.22546 0.97670 0.97808 0.98969 1.22281 0.94846 0.98763 0.99230 1.22139 0.95788 0.94518 0.85292 0.89607 1.22301 0.93634 0.85525 1.00390 1.45357 1.34750 1.39251 1.13030 1.19260 1.16715 1.01172 0.99041 0.90631 1.25429 1.01708 0.95289 1.01933 1.69970 1.49221 1.04810 1.34015 0.85242 0.78322 0.76404 0.80243 1.21753 1.20020 1.22503 0.89712 0.88310 0.93623 0.79733 0.79235 0.89354 0.87680 0.92990 0.93403 0.91780 0.92207 0.90937 0.91749 0.91263 0.93296 0.89636 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 9.67 71.24 0.69 -2.26 16 2 C -0.11 -3.15 5.93 -19.50 -0.12 -3.26 16 3 C 0.09 2.25 10.86 84.67 0.92 3.17 16 4 N -0.48 -12.53 10.33 -196.01 -2.03 -14.56 16 5 C 0.09 2.16 10.88 84.68 0.92 3.08 16 6 C -0.11 -2.81 5.84 -19.50 -0.11 -2.92 16 7 C -0.12 -2.61 9.17 71.23 0.65 -1.95 16 8 C -0.09 -2.98 3.73 -19.88 -0.07 -3.05 16 9 C 0.57 20.34 4.43 86.88 0.39 20.72 16 10 O -0.58 -23.53 16.39 -3.76 -0.06 -23.59 16 11 N -0.58 -21.31 2.09 -814.14 -1.70 -23.01 16 12 C 0.13 5.23 5.78 87.25 0.50 5.74 16 13 C 0.17 7.03 3.22 46.17 0.15 7.18 16 14 H 0.09 4.36 6.33 -2.39 -0.02 4.35 16 15 C -0.13 -4.51 6.19 31.36 0.19 -4.32 16 16 C -0.11 -3.69 6.18 31.37 0.19 -3.49 16 17 C 0.13 4.92 4.27 45.44 0.19 5.11 16 18 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 19 C 0.11 3.96 5.94 86.53 0.51 4.47 16 20 N -0.60 -27.55 2.78 -632.97 -1.76 -29.31 16 21 C -0.23 -11.90 10.37 84.03 0.87 -11.03 16 22 H 0.08 3.78 7.84 -2.91 -0.02 3.75 16 23 C -0.05 -2.54 5.42 84.86 0.46 -2.08 16 24 N -0.93 -50.15 10.40 21.65 0.23 -49.92 16 25 Si 0.97 43.05 29.56 68.60 2.03 45.08 16 26 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 28 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16 31 H 0.04 1.44 7.01 -2.39 -0.02 1.42 16 32 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.09 1.88 6.26 -2.39 -0.01 1.86 16 35 H 0.10 1.68 8.13 -2.39 -0.02 1.66 16 36 H 0.05 1.40 6.85 -2.39 -0.02 1.39 16 37 H 0.05 2.26 7.85 -2.39 -0.02 2.24 16 38 H 0.06 2.41 6.46 -2.39 -0.02 2.40 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 2.22 5.24 -2.39 -0.01 2.21 16 41 H 0.06 2.02 7.86 -2.39 -0.02 2.00 16 42 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.09 3.05 7.08 -2.39 -0.02 3.03 16 45 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -62.10 350.93 4.05 -58.05 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 1.00 Total: 22.13 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.34 Total: 15.12 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -5.26 Total: -116.80 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.06 Total: -23.59 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -62.10 4.05 -58.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029391032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.819 kcal (2) G-P(sol) polarization free energy of solvation -62.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds