Wall clock time and date at job start Tue Mar 31 2020 11:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38599 * 120.32839 * 2 1 4 4 N 1.31500 * 120.90386 * 179.97438 * 3 2 1 5 5 C 1.32739 * 121.64119 * 0.02562 * 4 3 2 6 6 C 1.48175 * 119.72096 * 179.97438 * 5 4 3 7 7 O 1.21510 * 119.99716 * 189.27916 * 6 5 4 8 8 N 1.34773 * 119.99990 * 9.27930 * 6 5 4 9 9 C 1.47162 * 120.70851 * 7.75304 * 8 6 5 10 10 C 1.55894 * 107.94931 * 132.45361 * 9 8 6 11 11 H 1.09002 * 112.45518 * 181.84904 * 10 9 8 12 12 C 1.54552 * 108.44269 * 307.13131 * 10 9 8 13 13 C 1.53730 * 104.95199 * 88.28758 * 12 10 9 14 14 C 1.54538 * 104.95570 * 359.97438 * 13 12 10 15 15 H 1.08999 * 112.18422 * 146.28251 * 14 13 12 16 16 C 1.47162 * 120.71131 * 187.77435 * 8 6 5 17 17 N 1.48308 * 106.17937 * 58.78035 * 10 9 8 18 18 C 1.36936 * 128.07751 * 106.44013 * 17 10 9 19 19 H 1.07993 * 119.99954 * 167.51455 * 18 17 10 20 20 C 1.38811 * 119.99968 * 347.52288 * 18 17 10 21 21 N 1.31622 * 119.99953 * 351.65876 * 20 18 17 22 22 Si 1.86798 * 120.00023 * 171.66375 * 20 18 17 23 23 H 1.48504 * 109.46967 * 269.99289 * 22 20 18 24 24 H 1.48498 * 109.47241 * 29.99875 * 22 20 18 25 25 H 1.48498 * 109.47183 * 149.99846 * 22 20 18 26 26 C 1.39272 * 120.55499 * 0.26005 * 5 4 3 27 27 C 1.38588 * 120.32293 * 179.97438 * 2 1 3 28 28 C 1.50698 * 120.75587 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47444 * 89.99828 * 1 2 3 30 30 H 1.08996 * 109.47136 * 209.99877 * 1 2 3 31 31 H 1.08996 * 109.46959 * 329.99680 * 1 2 3 32 32 H 1.08003 * 119.54740 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.75303 * 252.41000 * 9 8 6 34 34 H 1.09005 * 109.75282 * 13.09759 * 9 8 6 35 35 H 1.09002 * 110.36362 * 207.00695 * 12 10 9 36 36 H 1.09003 * 110.36153 * 329.20988 * 12 10 9 37 37 H 1.09001 * 110.41585 * 241.06394 * 13 12 10 38 38 H 1.09000 * 110.20314 * 118.82595 * 13 12 10 39 39 H 1.08995 * 109.74602 * 107.58532 * 16 8 6 40 40 H 1.08999 * 109.78462 * 346.87920 * 16 8 6 41 41 H 0.97005 * 119.99702 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.46530 * 179.72195 * 26 5 4 43 43 H 1.08992 * 109.47168 * 90.00144 * 28 27 2 44 44 H 1.09005 * 109.47291 * 210.00435 * 28 27 2 45 45 H 1.09002 * 109.47153 * 330.00035 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5218 1.2095 0.0005 5 6 4.2294 0.0865 0.0005 6 6 5.7098 0.1510 0.0005 7 8 6.3619 -0.8601 -0.1691 8 7 6.3328 1.3312 0.1887 9 6 5.5698 2.5325 0.5632 10 6 6.3058 3.2170 1.7549 11 1 5.7821 4.1030 2.1140 12 6 6.5248 2.1636 2.8643 13 6 7.8697 1.5018 2.5229 14 6 8.3481 2.2114 1.2361 15 1 9.4333 2.3059 1.1974 16 6 7.7906 1.4461 0.0237 17 7 7.6721 3.5312 1.2712 18 6 8.1900 4.7548 0.9396 19 1 9.2540 4.8694 0.7946 20 6 7.3475 5.8477 0.7901 21 7 6.0421 5.6791 0.8040 22 14 8.0661 7.5577 0.5691 23 1 8.2475 8.1940 1.8986 24 1 9.3801 7.4578 -0.1155 25 1 7.1418 8.3808 -0.2515 26 6 3.5922 -1.1519 -0.0054 27 6 2.2067 -1.1963 0.0005 28 6 1.4779 -2.5153 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6648 2.1305 -0.0004 33 1 5.5172 3.2148 -0.2853 34 1 4.5632 2.2487 0.8705 35 1 6.5796 2.6462 3.8401 36 1 5.7221 1.4263 2.8511 37 1 7.7334 0.4360 2.3397 38 1 8.5832 1.6602 3.3315 39 1 8.0156 1.9925 -0.8922 40 1 8.2363 0.4524 -0.0213 41 1 5.4534 6.4429 0.6991 42 1 4.1694 -2.0647 -0.0099 43 1 1.3026 -2.8336 -1.0270 44 1 2.0809 -3.2637 0.5149 45 1 0.5229 -2.4028 0.5140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029403149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:59 Heat of formation + Delta-G solvation = 34.000231 kcal Electronic energy + Delta-G solvation = -27435.604750 eV Core-core repulsion = 23839.763620 eV Total energy + Delta-G solvation = -3595.841130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05765 -40.84298 -39.21673 -35.95948 -35.15099 -34.16361 -33.38437 -32.10049 -31.05741 -29.50703 -28.44526 -27.49162 -25.64193 -25.35669 -23.74146 -23.49964 -21.32167 -21.19979 -20.36592 -18.92717 -18.11543 -17.34084 -17.08576 -16.94771 -16.45432 -16.19667 -15.75668 -15.59389 -15.52320 -15.00007 -14.64491 -14.49944 -14.30576 -13.91530 -13.86943 -13.64528 -13.57292 -13.49026 -13.30497 -13.05088 -12.85168 -12.74742 -12.57609 -12.49208 -12.41144 -12.00874 -11.86045 -11.52134 -11.42077 -11.28565 -11.14374 -10.80528 -10.47617 -10.03024 -9.86000 -9.63441 -8.65976 -7.79827 -5.16455 -0.35197 0.22389 1.49950 1.50406 1.58457 1.69330 2.05057 2.52235 2.79812 3.14793 3.36519 3.52089 3.63989 3.76841 3.90402 3.94090 4.07843 4.08543 4.19780 4.21610 4.35987 4.48248 4.57801 4.63547 4.66856 4.73321 4.76736 4.78984 4.85390 4.92053 4.98595 5.02635 5.08071 5.11459 5.15700 5.18175 5.23687 5.34114 5.39979 5.53123 5.56579 5.63334 5.81500 5.85970 6.26938 6.51408 6.77351 7.10365 7.14449 7.74708 8.54075 9.29898 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.004266 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.473898 B = 6561.523962 C = 7564.014612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.108 4.108 3 C 0.083 3.917 4 N -0.470 5.470 5 C 0.050 3.950 6 C 0.555 3.445 7 O -0.582 6.582 8 N -0.573 5.573 9 C 0.112 3.888 10 C 0.156 3.844 11 H 0.094 0.906 12 C -0.124 4.124 13 C -0.112 4.112 14 C 0.131 3.869 15 H 0.087 0.913 16 C 0.103 3.897 17 N -0.607 5.607 18 C -0.236 4.236 19 H 0.077 0.923 20 C -0.054 4.054 21 N -0.933 5.933 22 Si 0.973 3.027 23 H -0.288 1.288 24 H -0.275 1.275 25 H -0.296 1.296 26 C -0.115 4.115 27 C -0.054 4.054 28 C -0.114 4.114 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.180 0.820 33 H 0.031 0.969 34 H 0.127 0.873 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.144 0.856 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 -14.200 0.621 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.110 4.110 3 C -0.076 4.076 4 N -0.182 5.182 5 C -0.086 4.086 6 C 0.343 3.657 7 O -0.464 6.464 8 N -0.302 5.302 9 C -0.012 4.012 10 C 0.049 3.951 11 H 0.112 0.888 12 C -0.163 4.163 13 C -0.151 4.151 14 C 0.024 3.976 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.329 5.329 18 C -0.365 4.365 19 H 0.094 0.906 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.802 3.198 23 H -0.215 1.215 24 H -0.200 1.200 25 H -0.223 1.223 26 C -0.136 4.136 27 C -0.062 4.062 28 C -0.170 4.170 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.196 0.804 33 H 0.049 0.951 34 H 0.144 0.856 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.162 0.838 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.290 -13.648 0.468 18.372 hybrid contribution 0.400 0.710 -0.456 0.933 sum -11.890 -12.938 0.013 17.572 Atomic orbital electron populations 1.20935 0.86884 1.04935 1.04079 1.21410 0.99699 0.92508 0.97414 1.23358 0.88919 0.99608 0.95732 1.67803 1.09711 1.29311 1.11405 1.20967 0.93161 0.90863 1.03592 1.18390 0.87163 0.82958 0.77140 1.90654 1.66903 1.34837 1.53958 1.48127 1.08201 1.09453 1.64431 1.23405 0.96579 0.83502 0.97669 1.22475 0.86677 0.95019 0.90947 0.88837 1.22381 0.97051 0.97968 0.98929 1.22278 0.97071 0.98345 0.97398 1.22110 0.96785 0.85765 0.92981 0.89552 1.22303 0.80232 1.00477 0.99153 1.45438 1.10469 1.01291 1.75691 1.19314 0.92033 0.85098 1.40032 0.90568 1.25483 0.95864 1.01208 1.02235 1.69999 1.02047 1.29449 1.56580 0.85172 0.77216 0.80276 0.77135 1.21540 1.20046 1.22312 1.22051 0.95539 0.97746 0.98258 1.20590 0.92134 0.97769 0.95667 1.20964 1.00909 0.90898 1.04206 0.89162 0.88949 0.89806 0.80350 0.95087 0.85642 0.92402 0.92692 0.91984 0.91145 0.93705 0.89606 0.94239 0.83774 0.89070 0.90431 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.65 71.23 0.69 -0.42 16 2 C -0.11 -2.06 5.91 -19.70 -0.12 -2.17 16 3 C 0.08 2.10 10.86 84.83 0.92 3.02 16 4 N -0.47 -16.02 6.18 -184.90 -1.14 -17.16 16 5 C 0.05 1.74 6.56 41.90 0.27 2.02 16 6 C 0.56 22.78 7.66 86.88 0.67 23.45 16 7 O -0.58 -25.24 15.83 -3.75 -0.06 -25.30 16 8 N -0.57 -24.66 2.29 -814.12 -1.86 -26.52 16 9 C 0.11 5.12 5.24 87.25 0.46 5.58 16 10 C 0.16 7.47 3.26 46.17 0.15 7.62 16 11 H 0.09 5.10 6.11 -2.39 -0.01 5.08 16 12 C -0.12 -5.01 6.19 31.37 0.19 -4.81 16 13 C -0.11 -4.23 6.18 31.36 0.19 -4.04 16 14 C 0.13 5.57 4.27 45.44 0.19 5.76 16 15 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 16 C 0.10 4.36 5.95 86.53 0.51 4.88 16 17 N -0.61 -30.66 2.79 -632.98 -1.76 -32.43 16 18 C -0.24 -12.95 10.39 84.03 0.87 -12.08 16 19 H 0.08 4.06 7.84 -2.91 -0.02 4.04 16 20 C -0.05 -2.96 5.44 84.86 0.46 -2.50 16 21 N -0.93 -53.35 10.57 21.65 0.23 -53.12 16 22 Si 0.97 45.14 29.56 68.60 2.03 47.17 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 26 C -0.11 -3.19 9.34 22.61 0.21 -2.98 16 27 C -0.05 -1.08 5.91 -19.69 -0.12 -1.20 16 28 C -0.11 -1.28 9.67 71.24 0.69 -0.60 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.59 6.06 -2.39 -0.01 0.58 16 31 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 32 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.03 1.67 8.12 -2.38 -0.02 1.65 16 34 H 0.13 5.40 4.46 -34.48 -0.15 5.25 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 2.11 7.88 -2.39 -0.02 2.09 16 37 H 0.06 2.27 7.86 -2.39 -0.02 2.25 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.09 3.41 7.08 -2.39 -0.02 3.40 16 41 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 42 H 0.14 3.87 7.67 -2.91 -0.02 3.85 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.84 8.10 -2.38 -0.02 0.82 16 45 H 0.10 0.68 6.07 -2.39 -0.01 0.66 16 Total: -1.00 -69.05 351.56 4.54 -64.51 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.86 Total: 21.33 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 6.25 Total: 21.53 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -4.54 Total: -129.23 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.06 Total: -25.30 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.05 4.54 -64.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029403149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.510 kcal (2) G-P(sol) polarization free energy of solvation -69.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds