Wall clock time and date at job start Tue Mar 31 2020 10:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31891 * 119.61949 * 2 1 4 4 C 1.31856 * 121.72677 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.76499 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.15685 * 359.73205 * 5 4 3 7 7 C 1.38180 * 119.61979 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.41499 * 359.97257 * 7 2 1 9 9 C 1.50695 * 109.47033 * 85.00183 * 8 7 2 10 10 O 1.21285 * 120.00337 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00044 * 179.97438 * 9 8 7 12 12 C 1.47157 * 120.71201 * 180.02562 * 11 9 8 13 13 C 1.53889 * 108.03428 * 132.75613 * 12 11 9 14 14 H 1.08995 * 112.58227 * 182.22135 * 13 12 11 15 15 C 1.54543 * 107.82743 * 306.50714 * 13 12 11 16 16 C 1.54280 * 104.85303 * 89.07268 * 15 13 12 17 17 C 1.54549 * 104.84617 * 359.97438 * 16 15 13 18 18 H 1.09008 * 112.17589 * 146.40887 * 17 16 15 19 19 C 1.48437 * 120.83341 * 0.38221 * 11 9 8 20 20 N 1.48307 * 104.35730 * 24.71097 * 17 16 15 21 21 C 1.36933 * 128.08312 * 139.09679 * 20 17 16 22 22 H 1.08004 * 119.99638 * 344.93749 * 21 20 17 23 23 C 1.38805 * 120.00304 * 164.93759 * 21 20 17 24 24 N 1.31618 * 119.99910 * 350.60630 * 23 21 20 25 25 Si 1.86803 * 119.99915 * 170.61350 * 23 21 20 26 26 H 1.48506 * 109.47269 * 94.81580 * 25 23 21 27 27 H 1.48503 * 109.46802 * 214.80966 * 25 23 21 28 28 H 1.48493 * 109.47428 * 334.80929 * 25 23 21 29 29 H 1.09004 * 109.47052 * 270.02269 * 1 2 3 30 30 H 1.09002 * 109.47116 * 30.02085 * 1 2 3 31 31 H 1.09001 * 109.47397 * 150.02178 * 1 2 3 32 32 H 1.07996 * 119.61542 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.41959 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.78358 * 180.26780 * 6 5 4 35 35 H 1.08998 * 109.46980 * 325.00017 * 8 7 2 36 36 H 1.08997 * 109.47103 * 205.00476 * 8 7 2 37 37 H 1.09003 * 109.75387 * 13.11978 * 12 11 9 38 38 H 1.09002 * 109.79055 * 252.41543 * 12 11 9 39 39 H 1.09004 * 110.36402 * 207.91051 * 15 13 12 40 40 H 1.08997 * 110.36681 * 330.11543 * 15 13 12 41 41 H 1.09000 * 110.35988 * 241.15623 * 16 15 13 42 42 H 1.08998 * 110.37056 * 118.84103 * 16 15 13 43 43 H 1.09006 * 110.56905 * 107.75011 * 19 11 9 44 44 H 1.08996 * 109.56830 * 346.61353 * 19 11 9 45 45 H 0.97000 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4765 1.1950 -0.0005 5 6 4.2267 0.0341 -0.0005 6 6 3.5765 -1.1903 0.0057 7 6 2.1899 -1.2012 0.0005 8 6 1.4372 -2.5068 0.0017 9 6 1.0785 -2.8811 -1.4132 10 8 1.4025 -2.1591 -2.3323 11 7 0.3984 -4.0188 -1.6576 12 6 0.0405 -4.3997 -3.0332 13 6 0.4125 -5.8800 -3.2297 14 1 0.2128 -6.2309 -4.2421 15 6 1.8968 -6.0512 -2.8348 16 6 1.8708 -6.3604 -1.3236 17 6 0.3732 -6.3472 -0.9423 18 1 0.1424 -7.0660 -0.1559 19 6 -0.0139 -4.9124 -0.5463 20 7 -0.3317 -6.6578 -2.2097 21 6 -1.4165 -7.4726 -2.3950 22 1 -1.7114 -8.1638 -1.6194 23 6 -2.1372 -7.4100 -3.5797 24 7 -1.8976 -6.4483 -4.4458 25 14 -3.4472 -8.6907 -3.9447 26 1 -4.7741 -8.1766 -3.5197 27 1 -3.4699 -8.9740 -5.4023 28 1 -3.1392 -9.9394 -3.2025 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 3.9753 2.1529 -0.0001 33 1 5.3057 0.0803 -0.0005 34 1 4.1368 -2.1136 0.0101 35 1 0.5267 -2.4007 0.5915 36 1 2.0627 -3.2865 0.4364 37 1 0.5939 -3.7836 -3.7419 38 1 -1.0303 -4.2656 -3.1865 39 1 2.3421 -6.8809 -3.3840 40 1 2.4488 -5.1310 -3.0260 41 1 2.4096 -5.5914 -0.7699 42 1 2.3033 -7.3419 -1.1296 43 1 -1.0904 -4.8523 -0.3858 44 1 0.5115 -4.6275 0.3652 45 1 -2.4014 -6.4044 -5.2734 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029472332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:03 Heat of formation + Delta-G solvation = 35.771536 kcal Electronic energy + Delta-G solvation = -27282.722631 eV Core-core repulsion = 23686.958310 eV Total energy + Delta-G solvation = -3595.764320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.62211 -39.72302 -37.78903 -33.83309 -33.63384 -32.97430 -32.39036 -30.73774 -29.38559 -28.71984 -27.32848 -25.93075 -23.91257 -23.72465 -22.64064 -21.83779 -19.86946 -19.60383 -18.53578 -17.15541 -16.84831 -16.40854 -16.12886 -15.45140 -15.34704 -14.72334 -14.52650 -14.20391 -14.01144 -13.72176 -13.18607 -13.09804 -13.03953 -12.85213 -12.72990 -12.43351 -12.31489 -12.11035 -11.88408 -11.68279 -11.64412 -11.31530 -11.04669 -10.91988 -10.84239 -10.38576 -10.06878 -9.90123 -9.82021 -9.71025 -9.59687 -9.44659 -9.30267 -8.86317 -8.69482 -8.08284 -6.88675 -5.88080 -3.23941 1.09646 1.29534 3.06753 3.32537 3.39098 3.40741 3.50049 3.84715 4.30977 4.37705 4.61188 4.75913 4.89316 4.92973 4.97160 5.14435 5.28255 5.31995 5.40659 5.54886 5.56555 5.58063 5.61358 5.62690 5.69043 5.71528 5.78812 5.91014 6.07193 6.14334 6.16798 6.25061 6.28505 6.35895 6.48232 6.59485 6.65937 6.71916 6.76242 6.83183 6.94538 7.26958 7.46433 7.66186 8.00290 8.03967 8.09952 8.67803 9.01205 9.63676 10.39737 11.24695 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003496 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.914756 B = 8008.193932 C = 8360.121576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.144 3.856 3 N -0.487 5.487 4 C 0.096 3.904 5 C -0.180 4.180 6 C -0.063 4.063 7 C -0.107 4.107 8 C -0.100 4.100 9 C 0.508 3.492 10 O -0.551 6.551 11 N -0.593 5.593 12 C 0.113 3.887 13 C 0.169 3.831 14 H 0.118 0.882 15 C -0.137 4.137 16 C -0.121 4.121 17 C 0.133 3.867 18 H 0.078 0.922 19 C 0.094 3.906 20 N -0.584 5.584 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.002 4.002 24 N -0.912 5.912 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 7.795 11.089 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 N -0.196 5.196 4 C -0.062 4.062 5 C -0.200 4.200 6 C -0.088 4.088 7 C -0.109 4.109 8 C -0.141 4.141 9 C 0.295 3.705 10 O -0.430 6.430 11 N -0.325 5.325 12 C -0.010 4.010 13 C 0.061 3.939 14 H 0.136 0.864 15 C -0.176 4.176 16 C -0.160 4.160 17 C 0.024 3.976 18 H 0.096 0.904 19 C -0.031 4.031 20 N -0.305 5.305 21 C -0.357 4.357 22 H 0.094 0.906 23 C -0.199 4.199 24 N -0.557 5.557 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.170 0.830 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.725 8.841 10.403 16.202 hybrid contribution -0.133 -1.416 -0.199 1.436 sum 8.592 7.426 10.204 15.267 Atomic orbital electron populations 1.20751 0.89080 1.03948 1.02609 1.21052 0.96844 0.87697 0.93750 1.67503 1.10054 1.29161 1.12877 1.22660 0.89541 0.98298 0.95660 1.22034 1.01217 0.93420 1.03332 1.21429 0.93626 0.98514 0.95282 1.20162 0.94195 0.95135 1.01458 1.20679 1.01653 0.95070 0.96665 1.20224 0.78807 0.81195 0.90269 1.90682 1.55090 1.51148 1.46111 1.48544 1.53840 1.20815 1.09306 1.22413 1.01103 0.97665 0.79841 1.21885 0.86514 0.88678 0.96819 0.86446 1.22639 0.99689 0.99693 0.95580 1.22455 0.97016 0.99694 0.96865 1.21933 0.91677 0.92546 0.91453 0.90427 1.22775 1.00035 0.92536 0.87769 1.45172 1.32135 1.52727 1.00496 1.18985 1.02755 1.12094 1.01849 0.90574 1.24841 0.98753 0.98189 0.98152 1.69842 1.43266 1.31792 1.10844 0.86124 0.81362 0.80896 0.77438 1.21600 1.21613 1.20621 0.90459 0.90385 0.90628 0.83028 0.85002 0.85052 0.87978 0.88203 0.91406 0.90307 0.92879 0.92911 0.93158 0.92617 0.91221 0.91661 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.39 36.00 0.34 -1.00 16 2 C 0.14 2.06 6.78 -82.59 -0.56 1.50 16 3 N -0.49 -7.03 10.27 -9.48 -0.10 -7.12 16 4 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 5 C -0.18 -1.97 10.11 -39.44 -0.40 -2.37 16 6 C -0.06 -0.76 9.84 -39.28 -0.39 -1.15 16 7 C -0.11 -1.46 4.39 -104.48 -0.46 -1.92 16 8 C -0.10 -1.27 3.55 -29.04 -0.10 -1.38 16 9 C 0.51 8.74 6.93 -10.99 -0.08 8.66 16 10 O -0.55 -11.56 15.50 5.55 0.09 -11.47 16 11 N -0.59 -10.69 2.26 -170.54 -0.39 -11.08 16 12 C 0.11 2.42 5.81 -3.22 -0.02 2.41 16 13 C 0.17 3.73 3.12 -65.67 -0.20 3.53 16 14 H 0.12 2.99 6.37 -51.93 -0.33 2.66 16 15 C -0.14 -2.58 6.18 -25.25 -0.16 -2.73 16 16 C -0.12 -2.00 6.19 -25.25 -0.16 -2.15 16 17 C 0.13 2.39 4.27 -65.71 -0.28 2.11 16 18 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 19 C 0.09 1.51 5.91 -2.56 -0.02 1.49 16 20 N -0.58 -13.33 2.80 -152.66 -0.43 -13.76 16 21 C -0.23 -5.81 10.37 -15.06 -0.16 -5.96 16 22 H 0.08 1.88 7.85 -52.48 -0.41 1.47 16 23 C 0.00 -0.05 5.42 -17.43 -0.09 -0.15 16 24 N -0.91 -24.67 10.41 55.49 0.58 -24.09 16 25 Si 0.91 20.84 29.56 -169.99 -5.03 15.81 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.02 6.15 -51.93 -0.32 0.70 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.10 1.12 6.92 -51.93 -0.36 0.76 16 36 H 0.10 1.05 7.53 -51.93 -0.39 0.66 16 37 H 0.07 1.50 7.11 -51.93 -0.37 1.14 16 38 H 0.08 1.94 7.82 -51.93 -0.41 1.53 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.98 7.84 -51.93 -0.41 0.58 16 41 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 0.79 6.13 -51.93 -0.32 0.48 16 45 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -30.77 354.49 -9.52 -40.28 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.66 Total: 4.25 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.92 Total: 1.84 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.33 Total: -56.05 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.77 -9.52 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029472332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.055 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds