Wall clock time and date at job start Tue Mar 31 2020 10:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31891 * 119.61949 * 2 1 4 4 C 1.31856 * 121.72677 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.76499 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.15685 * 359.73205 * 5 4 3 7 7 C 1.38180 * 119.61979 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.41499 * 359.97257 * 7 2 1 9 9 C 1.50695 * 109.47033 * 85.00183 * 8 7 2 10 10 O 1.21285 * 120.00337 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00044 * 179.97438 * 9 8 7 12 12 C 1.47157 * 120.71201 * 180.02562 * 11 9 8 13 13 C 1.53889 * 108.03428 * 132.75613 * 12 11 9 14 14 H 1.08995 * 112.58227 * 182.22135 * 13 12 11 15 15 C 1.54543 * 107.82743 * 306.50714 * 13 12 11 16 16 C 1.54280 * 104.85303 * 89.07268 * 15 13 12 17 17 C 1.54549 * 104.84617 * 359.97438 * 16 15 13 18 18 H 1.09008 * 112.17589 * 146.40887 * 17 16 15 19 19 C 1.48437 * 120.83341 * 0.38221 * 11 9 8 20 20 N 1.48307 * 104.35730 * 24.71097 * 17 16 15 21 21 C 1.36933 * 128.08312 * 139.09679 * 20 17 16 22 22 H 1.08004 * 119.99638 * 344.93749 * 21 20 17 23 23 C 1.38805 * 120.00304 * 164.93759 * 21 20 17 24 24 N 1.31618 * 119.99910 * 350.60630 * 23 21 20 25 25 Si 1.86803 * 119.99915 * 170.61350 * 23 21 20 26 26 H 1.48506 * 109.47269 * 94.81580 * 25 23 21 27 27 H 1.48503 * 109.46802 * 214.80966 * 25 23 21 28 28 H 1.48493 * 109.47428 * 334.80929 * 25 23 21 29 29 H 1.09004 * 109.47052 * 270.02269 * 1 2 3 30 30 H 1.09002 * 109.47116 * 30.02085 * 1 2 3 31 31 H 1.09001 * 109.47397 * 150.02178 * 1 2 3 32 32 H 1.07996 * 119.61542 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.41959 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.78358 * 180.26780 * 6 5 4 35 35 H 1.08998 * 109.46980 * 325.00017 * 8 7 2 36 36 H 1.08997 * 109.47103 * 205.00476 * 8 7 2 37 37 H 1.09003 * 109.75387 * 13.11978 * 12 11 9 38 38 H 1.09002 * 109.79055 * 252.41543 * 12 11 9 39 39 H 1.09004 * 110.36402 * 207.91051 * 15 13 12 40 40 H 1.08997 * 110.36681 * 330.11543 * 15 13 12 41 41 H 1.09000 * 110.35988 * 241.15623 * 16 15 13 42 42 H 1.08998 * 110.37056 * 118.84103 * 16 15 13 43 43 H 1.09006 * 110.56905 * 107.75011 * 19 11 9 44 44 H 1.08996 * 109.56830 * 346.61353 * 19 11 9 45 45 H 0.97000 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4765 1.1950 -0.0005 5 6 4.2267 0.0341 -0.0005 6 6 3.5765 -1.1903 0.0057 7 6 2.1899 -1.2012 0.0005 8 6 1.4372 -2.5068 0.0017 9 6 1.0785 -2.8811 -1.4132 10 8 1.4025 -2.1591 -2.3323 11 7 0.3984 -4.0188 -1.6576 12 6 0.0405 -4.3997 -3.0332 13 6 0.4125 -5.8800 -3.2297 14 1 0.2128 -6.2309 -4.2421 15 6 1.8968 -6.0512 -2.8348 16 6 1.8708 -6.3604 -1.3236 17 6 0.3732 -6.3472 -0.9423 18 1 0.1424 -7.0660 -0.1559 19 6 -0.0139 -4.9124 -0.5463 20 7 -0.3317 -6.6578 -2.2097 21 6 -1.4165 -7.4726 -2.3950 22 1 -1.7114 -8.1638 -1.6194 23 6 -2.1372 -7.4100 -3.5797 24 7 -1.8976 -6.4483 -4.4458 25 14 -3.4472 -8.6907 -3.9447 26 1 -4.7741 -8.1766 -3.5197 27 1 -3.4699 -8.9740 -5.4023 28 1 -3.1392 -9.9394 -3.2025 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 3.9753 2.1529 -0.0001 33 1 5.3057 0.0803 -0.0005 34 1 4.1368 -2.1136 0.0101 35 1 0.5267 -2.4007 0.5915 36 1 2.0627 -3.2865 0.4364 37 1 0.5939 -3.7836 -3.7419 38 1 -1.0303 -4.2656 -3.1865 39 1 2.3421 -6.8809 -3.3840 40 1 2.4488 -5.1310 -3.0260 41 1 2.4096 -5.5914 -0.7699 42 1 2.3033 -7.3419 -1.1296 43 1 -1.0904 -4.8523 -0.3858 44 1 0.5115 -4.6275 0.3652 45 1 -2.4014 -6.4044 -5.2734 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029472332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:02 Heat of formation + Delta-G solvation = 18.179662 kcal Electronic energy + Delta-G solvation = -27283.485472 eV Core-core repulsion = 23686.958310 eV Total energy + Delta-G solvation = -3596.527161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77724 -40.97852 -39.24351 -35.36297 -34.76439 -34.10425 -33.87034 -32.27057 -31.07288 -29.82557 -28.37319 -27.39765 -25.46162 -25.34011 -23.65782 -22.82133 -21.29530 -21.18421 -20.08703 -18.62773 -17.84004 -17.70366 -17.32394 -16.82834 -16.66073 -16.46144 -15.74808 -15.41349 -15.26600 -15.19437 -14.64651 -14.44810 -14.21394 -14.01348 -13.96763 -13.54474 -13.47853 -13.34339 -13.21395 -13.15393 -13.02309 -12.76860 -12.72612 -12.54680 -12.26092 -11.98550 -11.78350 -11.47696 -11.42653 -11.10966 -10.93366 -10.73446 -10.49956 -10.36698 -9.69726 -9.66463 -8.68423 -7.83772 -5.19010 0.18113 0.39751 1.48774 1.50672 1.58733 1.74110 2.15411 2.52284 2.87082 3.36426 3.43164 3.51637 3.64589 3.79416 3.92326 4.00705 4.12219 4.15028 4.17847 4.28367 4.35993 4.45050 4.49446 4.55245 4.61845 4.65510 4.69910 4.70294 4.77252 4.84846 4.91389 5.01213 5.10494 5.12694 5.13921 5.19033 5.27157 5.31598 5.35519 5.44385 5.56444 5.60063 5.84335 5.87089 6.24681 6.65918 7.07417 7.08783 7.30184 7.75548 8.53918 9.27777 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003496 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.914756 B = 8008.193932 C = 8360.121576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.119 3.881 3 N -0.516 5.516 4 C 0.084 3.916 5 C -0.177 4.177 6 C -0.070 4.070 7 C -0.125 4.125 8 C -0.089 4.089 9 C 0.509 3.491 10 O -0.594 6.594 11 N -0.595 5.595 12 C 0.131 3.869 13 C 0.166 3.834 14 H 0.073 0.927 15 C -0.128 4.128 16 C -0.109 4.109 17 C 0.125 3.875 18 H 0.097 0.903 19 C 0.098 3.902 20 N -0.606 5.606 21 C -0.228 4.228 22 H 0.084 0.916 23 C -0.059 4.059 24 N -0.939 5.939 25 Si 0.969 3.031 26 H -0.292 1.292 27 H -0.301 1.301 28 H -0.269 1.269 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.120 0.880 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 7.421 14.383 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.018 4.018 3 N -0.226 5.226 4 C -0.073 4.073 5 C -0.196 4.196 6 C -0.096 4.096 7 C -0.128 4.128 8 C -0.128 4.128 9 C 0.299 3.701 10 O -0.475 6.475 11 N -0.326 5.326 12 C 0.006 3.994 13 C 0.058 3.942 14 H 0.091 0.909 15 C -0.168 4.168 16 C -0.148 4.148 17 C 0.018 3.982 18 H 0.114 0.886 19 C -0.026 4.026 20 N -0.328 5.328 21 C -0.357 4.357 22 H 0.102 0.898 23 C -0.253 4.253 24 N -0.587 5.587 25 Si 0.799 3.201 26 H -0.219 1.219 27 H -0.229 1.229 28 H -0.193 1.193 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.195 0.805 33 H 0.183 0.817 34 H 0.173 0.827 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.138 0.862 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.870 8.456 13.761 19.469 hybrid contribution -0.722 -1.215 -1.218 1.865 sum 10.148 7.241 12.543 17.685 Atomic orbital electron populations 1.20729 0.88826 1.02762 1.03747 1.21313 0.97466 0.88336 0.94687 1.67496 1.11502 1.29623 1.14017 1.23225 0.89034 1.00141 0.94897 1.22426 1.02896 0.92646 1.01660 1.21832 0.93311 1.00006 0.94469 1.20300 0.95090 0.94991 1.02387 1.20694 1.03241 0.95780 0.93123 1.21037 0.77307 0.79814 0.91947 1.90668 1.56523 1.52201 1.48116 1.48536 1.54160 1.21818 1.08120 1.21835 0.98059 0.97303 0.82213 1.21675 0.88895 0.88625 0.95014 0.90855 1.22505 0.96736 0.99654 0.97862 1.22409 0.96120 1.01600 0.94667 1.22260 0.92017 0.93992 0.89882 0.88559 1.22844 1.00032 0.90963 0.88750 1.45362 1.31932 1.52605 1.02862 1.19327 1.02808 1.11999 1.01555 0.89845 1.25534 1.01113 0.99983 0.98627 1.70051 1.44318 1.33467 1.10894 0.85207 0.79103 0.79388 0.76409 1.21910 1.22850 1.19344 0.88138 0.91341 0.91953 0.80463 0.81717 0.82725 0.85869 0.84671 0.93174 0.94577 0.93082 0.92889 0.89974 0.91230 0.92674 0.86194 0.94608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 9.39 71.23 0.67 -1.86 16 2 C 0.12 3.25 6.78 42.53 0.29 3.54 16 3 N -0.52 -14.34 10.27 -183.89 -1.89 -16.23 16 4 C 0.08 1.81 11.18 84.69 0.95 2.76 16 5 C -0.18 -3.28 10.11 22.36 0.23 -3.05 16 6 C -0.07 -1.46 9.84 22.47 0.22 -1.24 16 7 C -0.13 -3.07 4.39 -19.77 -0.09 -3.16 16 8 C -0.09 -1.92 3.55 29.10 0.10 -1.81 16 9 C 0.51 16.64 6.93 87.66 0.61 17.25 16 10 O -0.59 -24.85 15.50 -3.04 -0.05 -24.90 16 11 N -0.59 -20.76 2.26 -811.86 -1.84 -22.60 16 12 C 0.13 5.86 5.81 86.55 0.50 6.36 16 13 C 0.17 7.54 3.12 45.47 0.14 7.68 16 14 H 0.07 3.98 6.37 -2.39 -0.02 3.96 16 15 C -0.13 -4.70 6.18 31.55 0.20 -4.50 16 16 C -0.11 -3.17 6.19 31.56 0.20 -2.98 16 17 C 0.13 4.14 4.27 45.44 0.19 4.34 16 18 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 19 C 0.10 2.83 5.91 86.28 0.51 3.34 16 20 N -0.61 -27.52 2.80 -636.88 -1.78 -29.30 16 21 C -0.23 -11.61 10.37 84.03 0.87 -10.74 16 22 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 23 C -0.06 -3.13 5.42 84.86 0.46 -2.67 16 24 N -0.94 -53.62 10.41 21.65 0.23 -53.39 16 25 Si 0.97 43.87 29.56 68.60 2.03 45.90 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.66 6.15 -2.39 -0.01 1.64 16 32 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.12 2.18 6.92 -2.39 -0.02 2.16 16 36 H 0.14 1.99 7.53 -2.39 -0.02 1.97 16 37 H 0.05 2.37 7.11 -2.39 -0.02 2.35 16 38 H 0.04 1.90 7.82 -2.39 -0.02 1.88 16 39 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.05 1.92 7.84 -2.39 -0.02 1.90 16 41 H 0.08 1.90 7.85 -2.39 -0.02 1.88 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.12 2.20 6.13 -2.39 -0.01 2.19 16 45 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -71.84 354.49 3.73 -68.11 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.99 Total: 19.15 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.05 Total: 13.26 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -5.28 Total: -121.52 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.84 3.73 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029472332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.286 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds