Wall clock time and date at job start Tue Mar 31 2020 11:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38598 * 119.54796 * 2 1 4 4 C 1.38582 * 119.34877 * 180.02562 * 3 2 1 5 5 C 1.38638 * 118.48957 * 0.02562 * 4 3 2 6 6 C 1.39268 * 119.05750 * 0.27333 * 5 4 3 7 7 C 1.48168 * 119.72094 * 179.72171 * 6 5 4 8 8 O 1.21511 * 120.00256 * 337.51124 * 7 6 5 9 9 N 1.34779 * 120.00004 * 157.50855 * 7 6 5 10 10 C 1.47145 * 121.00969 * 0.53007 * 9 7 6 11 11 C 1.53048 * 107.68507 * 237.41427 * 10 9 7 12 12 C 1.51139 * 111.10859 * 305.59201 * 11 10 9 13 13 H 1.08997 * 108.46038 * 175.38685 * 12 11 10 14 14 C 1.53997 * 113.16885 * 55.13444 * 12 11 10 15 15 H 1.09000 * 112.71562 * 75.96464 * 14 12 11 16 16 C 1.56021 * 100.38772 * 196.33503 * 14 12 11 17 17 C 1.54499 * 102.61415 * 36.87078 * 16 14 12 18 18 N 1.46471 * 113.22682 * 294.92846 * 12 11 10 19 19 C 1.36931 * 126.05756 * 330.47842 * 18 12 11 20 20 H 1.08001 * 120.00230 * 359.97438 * 19 18 12 21 21 C 1.38811 * 120.00251 * 180.02562 * 19 18 12 22 22 N 1.31622 * 119.99977 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00230 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46873 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47351 * 119.99586 * 23 21 19 26 26 H 1.48500 * 109.47244 * 239.99928 * 23 21 19 27 27 C 1.46523 * 121.01166 * 180.25240 * 9 7 6 28 28 N 1.31488 * 119.54453 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46986 * 89.99314 * 1 2 3 30 30 H 1.08996 * 109.47357 * 210.00058 * 1 2 3 31 31 H 1.09002 * 109.46839 * 329.99595 * 1 2 3 32 32 H 1.07996 * 120.32899 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.76059 * 180.02562 * 4 3 2 34 34 H 1.07994 * 120.46913 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.81434 * 356.96352 * 10 9 7 36 36 H 1.09006 * 109.81189 * 117.80637 * 10 9 7 37 37 H 1.08999 * 109.14800 * 66.01233 * 11 10 9 38 38 H 1.08996 * 109.14834 * 185.17237 * 11 10 9 39 39 H 1.08990 * 110.78089 * 155.15360 * 16 14 12 40 40 H 1.08997 * 110.77787 * 278.59269 * 16 14 12 41 41 H 1.09002 * 109.90383 * 96.54388 * 17 16 14 42 42 H 1.09000 * 109.89973 * 217.60165 * 17 16 14 43 43 H 0.96993 * 120.00065 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.34683 * 244.65793 * 27 9 7 45 45 H 1.09004 * 109.34681 * 4.20377 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 -0.0005 5 6 4.2334 -0.0199 -0.0016 6 6 3.4820 -1.1925 -0.0079 7 6 4.1691 -2.5052 -0.0154 8 8 5.3122 -2.5904 -0.4187 9 7 3.5263 -3.6048 0.4252 10 6 2.1382 -3.5292 0.9076 11 6 2.1154 -4.0592 2.3432 12 6 2.7212 -5.4415 2.4228 13 1 2.7585 -5.7423 3.4698 14 6 4.1479 -5.5118 1.8472 15 1 4.8934 -5.0825 2.5165 16 6 4.3051 -7.0543 1.6728 17 6 2.8903 -7.4898 1.2305 18 7 1.9510 -6.4526 1.6948 19 6 0.5982 -6.4373 1.4833 20 1 0.0003 -5.6254 1.8701 21 6 -0.0048 -7.4660 0.7728 22 7 0.7237 -8.4559 0.3018 23 14 -1.8504 -7.4456 0.4849 24 1 -2.4358 -6.2336 1.1122 25 1 -2.1236 -7.4292 -0.9747 26 1 -2.4591 -8.6581 1.0888 27 6 4.1863 -4.9129 0.4328 28 7 2.1554 -1.1439 -0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6486 2.1398 0.0004 33 1 4.1320 2.1271 -0.0001 34 1 5.3126 -0.0609 -0.0016 35 1 1.7969 -2.4942 0.8903 36 1 1.4939 -4.1412 0.2764 37 1 2.6822 -3.3829 2.9830 38 1 1.0838 -4.1002 2.6928 39 1 5.0393 -7.2832 0.9005 40 1 4.5768 -7.5246 2.6178 41 1 2.8489 -7.5684 0.1442 42 1 2.6397 -8.4499 1.6817 43 1 0.3024 -9.1745 -0.1951 44 1 3.6729 -5.5804 -0.2592 45 1 5.2229 -4.7962 0.1164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036640551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:31 Heat of formation + Delta-G solvation = 46.966456 kcal Electronic energy + Delta-G solvation = -27454.513634 eV Core-core repulsion = 23859.234762 eV Total energy + Delta-G solvation = -3595.278872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90868 -39.46894 -38.01368 -35.00779 -33.16796 -32.99415 -32.33365 -31.53250 -29.23552 -27.96622 -27.48299 -25.69111 -24.47840 -23.35550 -22.59468 -22.11078 -20.14016 -19.87153 -18.42003 -17.22056 -16.70840 -16.30399 -16.11270 -15.63732 -15.13813 -15.06695 -14.59704 -14.23026 -14.19324 -13.83314 -13.56537 -13.39242 -12.92384 -12.85519 -12.46316 -12.43624 -12.39180 -12.05391 -11.97219 -11.43448 -11.34170 -11.05588 -10.97477 -10.76539 -10.62323 -10.16417 -10.10866 -10.03599 -9.96893 -9.85287 -9.59391 -9.56301 -9.12964 -8.77062 -8.56736 -8.08515 -6.76879 -5.67963 -3.00006 0.59414 1.02076 2.82128 3.25648 3.40975 3.46045 3.48907 3.69320 4.04339 4.48077 4.51877 4.61742 4.79446 4.89617 5.12639 5.26507 5.35514 5.38100 5.41832 5.46002 5.48412 5.61507 5.65011 5.81859 5.86961 5.89526 5.93795 5.95149 6.04596 6.15555 6.20303 6.36067 6.36243 6.43086 6.53214 6.59344 6.75760 6.82229 6.88508 7.00018 7.09169 7.61012 7.62345 7.64945 7.84571 7.85899 8.28571 8.39649 9.24823 9.87078 10.54994 11.44427 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.004893 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.656569 B = 5720.930920 C = 7194.193128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.122 3.878 3 C -0.156 4.156 4 C -0.078 4.078 5 C -0.124 4.124 6 C 0.097 3.903 7 C 0.563 3.437 8 O -0.551 6.551 9 N -0.574 5.574 10 C 0.080 3.920 11 C -0.129 4.129 12 C 0.169 3.831 13 H 0.015 0.985 14 C -0.115 4.115 15 H 0.077 0.923 16 C -0.143 4.143 17 C 0.177 3.823 18 N -0.593 5.593 19 C -0.220 4.220 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.124 3.876 28 N -0.444 5.444 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.250 0.750 44 H 0.081 0.919 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 18.299 1.172 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.017 4.017 3 C -0.176 4.176 4 C -0.104 4.104 5 C -0.145 4.145 6 C -0.041 4.041 7 C 0.349 3.651 8 O -0.430 6.430 9 N -0.302 5.302 10 C -0.042 4.042 11 C -0.168 4.168 12 C 0.062 3.938 13 H 0.033 0.967 14 C -0.135 4.135 15 H 0.095 0.905 16 C -0.182 4.182 17 C 0.052 3.948 18 N -0.319 5.319 19 C -0.348 4.348 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.220 1.220 27 C 0.002 3.998 28 N -0.157 5.157 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.818 17.288 0.857 17.725 hybrid contribution -0.560 0.535 -0.103 0.781 sum 3.258 17.823 0.753 18.134 Atomic orbital electron populations 1.20781 0.88186 1.03951 1.03529 1.21537 0.97444 0.88170 0.94554 1.22136 0.94978 0.99324 1.01191 1.21590 0.94432 0.98171 0.96165 1.22050 1.02076 0.91742 0.98594 1.21268 0.89565 0.94424 0.98830 1.17875 0.85301 0.83083 0.78813 1.90739 1.17520 1.85501 1.49202 1.47982 1.15200 1.07167 1.59890 1.22945 0.80777 1.05758 0.94724 1.21616 1.01578 0.96933 0.96673 1.20281 0.89497 0.89386 0.94683 0.96730 1.22809 0.98340 0.96422 0.95959 0.90517 1.23145 1.00300 0.94148 1.00567 1.21231 0.83502 0.91696 0.98374 1.44327 1.03119 1.21124 1.63340 1.19006 0.81305 1.05751 1.28716 0.90317 1.24756 0.97703 0.97248 1.00713 1.69963 1.33316 1.12054 1.41534 0.86125 0.85385 0.77241 0.77511 1.20532 1.21909 1.21950 1.21715 0.98070 0.82643 0.97411 1.67532 1.08473 1.28225 1.11458 0.90052 0.89782 0.90597 0.84445 0.84186 0.83689 0.85071 0.89672 0.93388 0.90879 0.92012 0.92373 0.93557 0.94004 0.93934 0.90058 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.17 36.01 0.37 -0.55 16 2 C 0.12 1.35 6.78 -82.60 -0.56 0.79 16 3 C -0.16 -1.37 9.75 -39.32 -0.38 -1.75 16 4 C -0.08 -0.70 10.17 -39.31 -0.40 -1.10 16 5 C -0.12 -1.50 9.63 -39.05 -0.38 -1.87 16 6 C 0.10 1.46 6.48 -83.01 -0.54 0.92 16 7 C 0.56 10.14 7.62 -12.18 -0.09 10.04 16 8 O -0.55 -10.94 15.97 5.36 0.09 -10.86 16 9 N -0.57 -10.60 2.93 -173.71 -0.51 -11.11 16 10 C 0.08 1.45 5.99 -3.67 -0.02 1.43 16 11 C -0.13 -2.36 5.19 -27.64 -0.14 -2.50 16 12 C 0.17 3.46 2.85 -68.36 -0.19 3.27 16 13 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 14 C -0.11 -2.11 3.88 -88.15 -0.34 -2.46 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.14 -2.70 6.29 -24.33 -0.15 -2.85 16 17 C 0.18 4.21 4.63 -2.74 -0.01 4.20 16 18 N -0.59 -14.44 3.12 -164.49 -0.51 -14.96 16 19 C -0.22 -5.80 9.02 -15.06 -0.14 -5.94 16 20 H 0.08 2.01 6.69 -52.49 -0.35 1.66 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.64 10.38 55.49 0.58 -26.06 16 23 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.12 2.35 5.47 -3.69 -0.02 2.33 16 28 N -0.44 -6.35 6.29 -6.06 -0.04 -6.39 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.15 1.65 7.81 -52.49 -0.41 1.24 16 35 H 0.13 2.19 3.90 -80.89 -0.32 1.87 16 36 H 0.09 1.81 7.48 -51.93 -0.39 1.42 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.37 7.01 -51.93 -0.36 1.00 16 39 H 0.06 1.06 7.97 -51.93 -0.41 0.65 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.22 6.99 -51.93 -0.36 0.86 16 42 H 0.04 1.11 7.57 -51.93 -0.39 0.72 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.08 1.73 6.81 -51.93 -0.35 1.37 16 45 H 0.08 1.47 6.99 -51.93 -0.36 1.10 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -31.56 349.51 -9.91 -41.47 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.65 Total: 2.25 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -3.10 Total: 3.64 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.48 Total: -58.52 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.56 -9.91 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036640551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.438 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds