Wall clock time and date at job start Tue Mar 31 2020 11:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38598 * 119.54796 * 2 1 4 4 C 1.38582 * 119.34877 * 180.02562 * 3 2 1 5 5 C 1.38638 * 118.48957 * 0.02562 * 4 3 2 6 6 C 1.39268 * 119.05750 * 0.27333 * 5 4 3 7 7 C 1.48168 * 119.72094 * 179.72171 * 6 5 4 8 8 O 1.21511 * 120.00256 * 337.51124 * 7 6 5 9 9 N 1.34779 * 120.00004 * 157.50855 * 7 6 5 10 10 C 1.47145 * 121.00969 * 0.53007 * 9 7 6 11 11 C 1.53048 * 107.68507 * 237.41427 * 10 9 7 12 12 C 1.51139 * 111.10859 * 305.59201 * 11 10 9 13 13 H 1.08997 * 108.46038 * 175.38685 * 12 11 10 14 14 C 1.53997 * 113.16885 * 55.13444 * 12 11 10 15 15 H 1.09000 * 112.71562 * 75.96464 * 14 12 11 16 16 C 1.56021 * 100.38772 * 196.33503 * 14 12 11 17 17 C 1.54499 * 102.61415 * 36.87078 * 16 14 12 18 18 N 1.46471 * 113.22682 * 294.92846 * 12 11 10 19 19 C 1.36931 * 126.05756 * 330.47842 * 18 12 11 20 20 H 1.08001 * 120.00230 * 359.97438 * 19 18 12 21 21 C 1.38811 * 120.00251 * 180.02562 * 19 18 12 22 22 N 1.31622 * 119.99977 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00230 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46873 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47351 * 119.99586 * 23 21 19 26 26 H 1.48500 * 109.47244 * 239.99928 * 23 21 19 27 27 C 1.46523 * 121.01166 * 180.25240 * 9 7 6 28 28 N 1.31488 * 119.54453 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46986 * 89.99314 * 1 2 3 30 30 H 1.08996 * 109.47357 * 210.00058 * 1 2 3 31 31 H 1.09002 * 109.46839 * 329.99595 * 1 2 3 32 32 H 1.07996 * 120.32899 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.76059 * 180.02562 * 4 3 2 34 34 H 1.07994 * 120.46913 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.81434 * 356.96352 * 10 9 7 36 36 H 1.09006 * 109.81189 * 117.80637 * 10 9 7 37 37 H 1.08999 * 109.14800 * 66.01233 * 11 10 9 38 38 H 1.08996 * 109.14834 * 185.17237 * 11 10 9 39 39 H 1.08990 * 110.78089 * 155.15360 * 16 14 12 40 40 H 1.08997 * 110.77787 * 278.59269 * 16 14 12 41 41 H 1.09002 * 109.90383 * 96.54388 * 17 16 14 42 42 H 1.09000 * 109.89973 * 217.60165 * 17 16 14 43 43 H 0.96993 * 120.00065 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.34683 * 244.65793 * 27 9 7 45 45 H 1.09004 * 109.34681 * 4.20377 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 -0.0005 5 6 4.2334 -0.0199 -0.0016 6 6 3.4820 -1.1925 -0.0079 7 6 4.1691 -2.5052 -0.0154 8 8 5.3122 -2.5904 -0.4187 9 7 3.5263 -3.6048 0.4252 10 6 2.1382 -3.5292 0.9076 11 6 2.1154 -4.0592 2.3432 12 6 2.7212 -5.4415 2.4228 13 1 2.7585 -5.7423 3.4698 14 6 4.1479 -5.5118 1.8472 15 1 4.8934 -5.0825 2.5165 16 6 4.3051 -7.0543 1.6728 17 6 2.8903 -7.4898 1.2305 18 7 1.9510 -6.4526 1.6948 19 6 0.5982 -6.4373 1.4833 20 1 0.0003 -5.6254 1.8701 21 6 -0.0048 -7.4660 0.7728 22 7 0.7237 -8.4559 0.3018 23 14 -1.8504 -7.4456 0.4849 24 1 -2.4358 -6.2336 1.1122 25 1 -2.1236 -7.4292 -0.9747 26 1 -2.4591 -8.6581 1.0888 27 6 4.1863 -4.9129 0.4328 28 7 2.1554 -1.1439 -0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6486 2.1398 0.0004 33 1 4.1320 2.1271 -0.0001 34 1 5.3126 -0.0609 -0.0016 35 1 1.7969 -2.4942 0.8903 36 1 1.4939 -4.1412 0.2764 37 1 2.6822 -3.3829 2.9830 38 1 1.0838 -4.1002 2.6928 39 1 5.0393 -7.2832 0.9005 40 1 4.5768 -7.5246 2.6178 41 1 2.8489 -7.5684 0.1442 42 1 2.6397 -8.4499 1.6817 43 1 0.3024 -9.1745 -0.1951 44 1 3.6729 -5.5804 -0.2592 45 1 5.2229 -4.7962 0.1164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036640551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:30 Heat of formation + Delta-G solvation = 28.213030 kcal Electronic energy + Delta-G solvation = -27455.326844 eV Core-core repulsion = 23859.234762 eV Total energy + Delta-G solvation = -3596.092082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.03206 -40.79666 -39.50085 -36.57711 -34.68134 -33.98441 -33.45498 -33.19319 -31.04386 -29.26007 -28.66490 -27.13963 -26.20002 -24.60898 -24.04721 -23.10209 -21.85165 -21.30258 -19.96609 -18.65787 -18.11893 -17.66974 -17.15419 -16.92001 -16.78575 -16.30347 -16.24734 -15.69544 -15.48947 -15.23412 -14.80201 -14.44393 -14.42377 -14.30687 -13.94943 -13.69241 -13.31195 -13.18903 -13.08123 -13.04440 -12.87881 -12.81300 -12.62006 -12.49359 -12.23670 -11.94856 -11.69849 -11.55355 -11.52299 -11.39006 -11.22474 -10.87230 -10.65086 -10.02365 -9.92007 -9.58600 -8.79466 -7.78460 -5.11314 -0.32934 0.22710 1.47029 1.47359 1.57181 1.63012 1.93769 2.53060 2.73342 3.01926 3.40853 3.52732 3.60776 3.83573 3.87850 3.91549 4.03966 4.04157 4.10232 4.27987 4.34468 4.38299 4.52820 4.55052 4.59663 4.67814 4.75719 4.78986 4.79396 4.84674 4.97062 5.05772 5.09104 5.15058 5.20971 5.23661 5.25803 5.30377 5.40881 5.53823 5.58298 5.68094 5.78918 5.80545 6.24869 6.40170 6.72458 7.05203 7.15721 7.84883 8.51963 9.33390 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.004893 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.656569 B = 5720.930920 C = 7194.193128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.109 3.891 3 C -0.136 4.136 4 C -0.067 4.067 5 C -0.126 4.126 6 C 0.062 3.938 7 C 0.561 3.439 8 O -0.577 6.577 9 N -0.581 5.581 10 C 0.091 3.909 11 C -0.122 4.122 12 C 0.161 3.839 13 H 0.016 0.984 14 C -0.101 4.101 15 H 0.106 0.894 16 C -0.129 4.129 17 C 0.185 3.815 18 N -0.608 5.608 19 C -0.215 4.215 20 H 0.087 0.913 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.968 3.032 24 H -0.260 1.260 25 H -0.299 1.299 26 H -0.297 1.297 27 C 0.129 3.871 28 N -0.476 5.476 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.009 0.991 42 H 0.006 0.994 43 H 0.242 0.758 44 H 0.047 0.953 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 22.605 2.250 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.031 4.031 3 C -0.155 4.155 4 C -0.092 4.092 5 C -0.147 4.147 6 C -0.074 4.074 7 C 0.349 3.651 8 O -0.458 6.458 9 N -0.310 5.310 10 C -0.031 4.031 11 C -0.161 4.161 12 C 0.055 3.945 13 H 0.033 0.967 14 C -0.121 4.121 15 H 0.124 0.876 16 C -0.168 4.168 17 C 0.060 3.940 18 N -0.333 5.333 19 C -0.345 4.345 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.605 5.605 23 Si 0.797 3.203 24 H -0.185 1.185 25 H -0.227 1.227 26 H -0.225 1.225 27 C 0.006 3.994 28 N -0.190 5.190 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.199 0.801 33 H 0.199 0.801 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.027 0.973 42 H 0.024 0.976 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.750 21.632 1.962 22.043 hybrid contribution -0.540 -0.647 -0.467 0.964 sum 3.210 20.985 1.495 21.282 Atomic orbital electron populations 1.20878 0.86620 1.04748 1.04117 1.22053 0.98567 0.88230 0.94230 1.22617 0.95058 0.99961 0.97892 1.22061 0.94816 0.98294 0.94068 1.22200 1.02205 0.92050 0.98241 1.20879 0.90271 0.93479 1.02722 1.18425 0.85134 0.84046 0.77491 1.90700 1.18760 1.86201 1.50116 1.48022 1.15235 1.07206 1.60496 1.22861 0.80178 1.06360 0.93682 1.21552 1.01460 0.95964 0.97128 1.20510 0.90373 0.89621 0.94041 0.96688 1.22781 0.97656 0.95856 0.95814 0.87553 1.23022 0.97217 0.94672 1.01840 1.20960 0.86548 0.90570 0.95886 1.44554 1.02988 1.22360 1.63410 1.19366 0.82608 1.05227 1.27257 0.89530 1.25533 1.01701 0.97440 1.01522 1.70188 1.34646 1.12743 1.42879 0.85143 0.80834 0.77528 0.76753 1.18453 1.22663 1.22491 1.21526 0.97846 0.82853 0.97152 1.67192 1.08342 1.30506 1.12957 0.89512 0.91491 0.87315 0.80148 0.80077 0.83597 0.82957 0.93729 0.90912 0.91394 0.90275 0.90532 0.97265 0.97595 0.94898 0.93439 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.17 71.24 0.72 -0.78 16 2 C 0.11 2.09 6.78 42.70 0.29 2.38 16 3 C -0.14 -1.71 9.75 22.44 0.22 -1.49 16 4 C -0.07 -0.90 10.17 22.45 0.23 -0.67 16 5 C -0.13 -2.75 9.63 22.61 0.22 -2.53 16 6 C 0.06 1.82 6.48 41.89 0.27 2.09 16 7 C 0.56 20.31 7.62 86.88 0.66 20.97 16 8 O -0.58 -23.13 15.97 -3.75 -0.06 -23.19 16 9 N -0.58 -21.82 2.93 -821.79 -2.41 -24.23 16 10 C 0.09 3.37 5.99 86.27 0.52 3.88 16 11 C -0.12 -4.39 5.19 30.00 0.16 -4.24 16 12 C 0.16 6.57 2.85 44.73 0.13 6.70 16 13 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 14 C -0.10 -3.65 3.88 -9.19 -0.04 -3.69 16 15 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 16 C -0.13 -4.87 6.29 32.15 0.20 -4.67 16 17 C 0.19 9.31 4.63 86.71 0.40 9.71 16 18 N -0.61 -30.58 3.12 -674.34 -2.10 -32.69 16 19 C -0.22 -11.73 9.02 84.03 0.76 -10.98 16 20 H 0.09 4.47 6.69 -2.91 -0.02 4.45 16 21 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 22 N -0.95 -58.24 10.38 21.65 0.22 -58.02 16 23 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 27 C 0.13 5.00 5.47 86.59 0.47 5.48 16 28 N -0.48 -13.10 6.29 -173.08 -1.09 -14.18 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.11 0.80 8.08 -2.39 -0.02 0.78 16 32 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 34 H 0.15 3.07 7.81 -2.91 -0.02 3.05 16 35 H 0.15 5.08 3.90 -59.56 -0.23 4.85 16 36 H 0.04 1.99 7.48 -2.38 -0.02 1.97 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.50 7.01 -2.39 -0.02 2.49 16 39 H 0.08 2.72 7.97 -2.39 -0.02 2.70 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.01 0.52 6.99 -2.39 -0.02 0.50 16 42 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 43 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.05 2.15 6.81 -2.39 -0.02 2.13 16 45 H 0.08 3.15 6.99 -2.39 -0.02 3.14 16 Total: -1.00 -73.83 349.51 3.04 -70.78 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.77 Total: 14.76 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 5.68 Total: 18.67 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -5.37 Total: -129.12 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.06 Total: -23.19 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.83 3.04 -70.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036640551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.997 kcal (2) G-P(sol) polarization free energy of solvation -73.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds