Wall clock time and date at job start Tue Mar 31 2020 11:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38605 * 119.54619 * 2 1 4 4 C 1.38585 * 119.35042 * 179.97438 * 3 2 1 5 5 C 1.38635 * 118.48892 * 0.02562 * 4 3 2 6 6 C 1.39270 * 119.05817 * 359.97438 * 5 4 3 7 7 C 1.48169 * 119.72172 * 179.97438 * 6 5 4 8 8 O 1.21514 * 119.99806 * 337.39530 * 7 6 5 9 9 N 1.34775 * 120.00311 * 157.39373 * 7 6 5 10 10 C 1.46593 * 119.68536 * 179.87463 * 9 7 6 11 11 C 1.53956 * 110.57603 * 132.15250 * 10 9 7 12 12 C 1.51516 * 107.34504 * 51.05472 * 11 10 9 13 13 H 1.08994 * 109.27915 * 53.02626 * 12 11 10 14 14 C 1.55368 * 107.79337 * 295.14308 * 12 11 10 15 15 H 1.09000 * 111.51107 * 308.81148 * 14 12 11 16 16 C 1.53743 * 100.21747 * 190.91387 * 14 12 11 17 17 C 1.55287 * 101.84334 * 39.09024 * 16 14 12 18 18 N 1.45469 * 117.35075 * 178.09388 * 12 11 10 19 19 C 1.36932 * 126.40351 * 329.40955 * 18 12 11 20 20 H 1.08000 * 120.00417 * 0.02562 * 19 18 12 21 21 C 1.38818 * 119.99858 * 180.02562 * 19 18 12 22 22 N 1.31620 * 119.99966 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99737 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47299 * 60.00265 * 23 21 19 25 25 H 1.48502 * 109.46733 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47238 * 300.00023 * 23 21 19 27 27 C 1.47714 * 119.68249 * 359.60094 * 9 7 6 28 28 N 1.31498 * 119.54981 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46882 * 90.00473 * 1 2 3 30 30 H 1.09006 * 109.46755 * 209.99662 * 1 2 3 31 31 H 1.08999 * 109.47334 * 329.99804 * 1 2 3 32 32 H 1.07996 * 120.32297 * 359.95389 * 3 2 1 33 33 H 1.08001 * 120.75537 * 179.72820 * 4 3 2 34 34 H 1.07998 * 120.46783 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.25786 * 252.43405 * 10 9 7 36 36 H 1.09001 * 109.25525 * 11.91004 * 10 9 7 37 37 H 1.09003 * 109.88286 * 170.51527 * 11 10 9 38 38 H 1.09002 * 109.87997 * 291.52085 * 11 10 9 39 39 H 1.09003 * 110.95922 * 280.95411 * 16 14 12 40 40 H 1.08998 * 110.95875 * 157.23182 * 16 14 12 41 41 H 1.09001 * 109.92268 * 218.17039 * 17 16 14 42 42 H 1.09007 * 109.91397 * 96.87159 * 17 16 14 43 43 H 0.96994 * 119.99494 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.07169 * 351.29379 * 27 9 7 45 45 H 1.09010 * 110.06873 * 112.86819 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2011 0.0005 5 6 4.2334 -0.0197 0.0005 6 6 3.4821 -1.1923 0.0005 7 6 4.1692 -2.5050 -0.0001 8 8 5.3116 -2.5926 -0.4050 9 7 3.5274 -3.6019 0.4485 10 6 4.2129 -4.8977 0.4422 11 6 4.0439 -5.6058 1.7988 12 6 2.5647 -5.6067 2.1267 13 1 2.0105 -6.0292 1.2887 14 6 2.1207 -4.1306 2.3217 15 1 2.7706 -3.6070 3.0228 16 6 0.7176 -4.3437 2.9129 17 6 0.9479 -5.5606 3.8497 18 7 2.1530 -6.2667 3.3560 19 6 2.7653 -7.3398 3.9465 20 1 3.6443 -7.7759 3.4952 21 6 2.2563 -7.8671 5.1255 22 7 1.1849 -7.3360 5.6753 23 14 3.0920 -9.3305 5.9315 24 1 4.4927 -8.9743 6.2731 25 1 2.3594 -9.6987 7.1696 26 1 3.0888 -10.4812 4.9929 27 6 2.1419 -3.4858 0.9475 28 7 2.1555 -1.1439 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6484 2.1398 -0.0008 33 1 4.1318 2.1273 -0.0039 34 1 5.3126 -0.0606 0.0005 35 1 3.7918 -5.5234 -0.3447 36 1 5.2741 -4.7419 0.2484 37 1 4.4090 -6.6305 1.7301 38 1 4.5953 -5.0669 2.5694 39 1 -0.0026 -4.5846 2.1309 40 1 0.3968 -3.4701 3.4803 41 1 0.0858 -6.2265 3.8123 42 1 1.1112 -5.2170 4.8712 43 1 0.8295 -7.7043 6.4992 44 1 1.8585 -2.4361 1.0238 45 1 1.4587 -4.0113 0.2801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036640553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:38 Heat of formation + Delta-G solvation = 47.702994 kcal Electronic energy + Delta-G solvation = -26970.000213 eV Core-core repulsion = 23374.753280 eV Total energy + Delta-G solvation = -3595.246933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.06039 -39.54106 -38.15679 -35.28970 -33.26855 -33.10573 -32.52834 -31.40401 -29.49777 -28.10026 -27.90550 -25.50855 -24.40902 -23.11489 -22.79118 -21.83332 -20.21028 -19.87698 -19.19024 -17.44940 -16.85855 -16.43564 -16.19978 -15.70555 -15.31797 -14.97276 -14.63950 -14.41385 -14.13364 -13.89113 -13.64802 -13.42871 -13.11560 -13.03645 -12.64635 -12.51968 -12.43938 -12.22507 -12.07496 -11.63155 -11.44962 -11.35508 -10.78046 -10.76342 -10.59205 -10.29494 -10.13962 -10.12170 -10.01404 -9.82573 -9.74930 -9.57584 -9.22903 -8.85329 -8.58850 -8.42413 -6.79884 -5.68609 -3.01214 0.49108 0.92856 2.67356 3.02626 3.42466 3.46842 3.47675 3.57498 3.88645 4.37390 4.47498 4.52534 4.71161 4.80771 5.02783 5.11127 5.26292 5.32579 5.34482 5.35311 5.40477 5.48642 5.60685 5.69013 5.74445 5.79549 5.83985 5.85168 5.93981 5.97314 6.18086 6.21032 6.28664 6.31308 6.39720 6.52470 6.56679 6.67061 6.71624 6.94399 7.13208 7.44082 7.56665 7.59598 7.64361 7.83400 8.19689 8.27761 9.22944 9.86450 10.54914 11.43990 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.003594 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.437786 B = 7788.243053 C = 8666.204773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.121 3.879 3 C -0.153 4.153 4 C -0.078 4.078 5 C -0.121 4.121 6 C 0.092 3.908 7 C 0.565 3.435 8 O -0.545 6.545 9 N -0.582 5.582 10 C 0.113 3.887 11 C -0.127 4.127 12 C 0.166 3.834 13 H 0.019 0.981 14 C -0.129 4.129 15 H 0.075 0.925 16 C -0.133 4.133 17 C 0.177 3.823 18 N -0.595 5.595 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.097 3.903 28 N -0.446 5.446 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.252 0.748 44 H 0.133 0.867 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 18.214 -12.070 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.018 4.018 3 C -0.173 4.173 4 C -0.103 4.103 5 C -0.142 4.142 6 C -0.045 4.045 7 C 0.351 3.649 8 O -0.423 6.423 9 N -0.312 5.312 10 C -0.009 4.009 11 C -0.166 4.166 12 C 0.058 3.942 13 H 0.037 0.963 14 C -0.149 4.149 15 H 0.093 0.907 16 C -0.172 4.172 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.025 4.025 28 N -0.159 5.159 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.149 0.851 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.588 17.162 -12.075 20.993 hybrid contribution 0.853 -0.100 0.602 1.049 sum 0.265 17.063 -11.472 20.563 Atomic orbital electron populations 1.20769 0.88127 1.04057 1.03386 1.21517 0.97430 0.88160 0.94729 1.22161 0.94986 0.99399 1.00795 1.21608 0.94458 0.98228 0.96032 1.22064 1.02145 0.91747 0.98239 1.21187 0.89651 0.94319 0.99393 1.17956 0.85262 0.83166 0.78528 1.90755 1.17375 1.85397 1.48762 1.48191 1.15421 1.07442 1.60138 1.21716 0.98242 0.82754 0.98216 1.21873 0.98945 1.00494 0.95332 1.20665 0.92483 0.90464 0.90579 0.96336 1.22620 0.98545 0.98185 0.95555 0.90694 1.22677 0.94956 0.99975 0.99567 1.21524 0.89144 0.89095 0.94945 1.44204 1.30052 1.33857 1.23828 1.18970 1.07959 1.04394 1.03971 0.90455 1.24779 0.98002 0.99652 0.98019 1.69930 1.23587 1.42625 1.20883 0.86235 0.78578 0.82426 0.78751 1.21231 1.21650 1.21208 1.22687 0.80445 1.05430 0.93902 1.67619 1.08412 1.28493 1.11425 0.90146 0.89827 0.90495 0.84352 0.84087 0.83632 0.91681 0.89375 0.90548 0.91540 0.92334 0.92289 0.94424 0.92838 0.93782 0.85071 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.17 36.01 0.37 -0.36 16 2 C 0.12 1.17 6.78 -82.60 -0.56 0.61 16 3 C -0.15 -1.19 9.75 -39.32 -0.38 -1.58 16 4 C -0.08 -0.63 10.17 -39.31 -0.40 -1.03 16 5 C -0.12 -1.35 9.63 -39.05 -0.38 -1.73 16 6 C 0.09 1.25 6.40 -83.01 -0.53 0.72 16 7 C 0.56 9.18 7.58 -12.18 -0.09 9.08 16 8 O -0.54 -9.96 15.88 5.35 0.08 -9.88 16 9 N -0.58 -9.41 3.01 -173.74 -0.52 -9.93 16 10 C 0.11 1.83 6.33 -3.49 -0.02 1.81 16 11 C -0.13 -2.37 5.48 -26.98 -0.15 -2.51 16 12 C 0.17 3.45 2.58 -67.98 -0.18 3.27 16 13 H 0.02 0.41 7.90 -51.93 -0.41 0.00 16 14 C -0.13 -2.33 2.84 -89.58 -0.25 -2.59 16 15 H 0.07 1.48 8.13 -51.93 -0.42 1.05 16 16 C -0.13 -2.45 6.54 -25.13 -0.16 -2.62 16 17 C 0.18 4.29 5.45 -1.92 -0.01 4.28 16 18 N -0.59 -15.13 3.35 -163.10 -0.55 -15.67 16 19 C -0.22 -6.23 9.88 -15.06 -0.15 -6.38 16 20 H 0.08 2.06 7.21 -52.49 -0.38 1.68 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -27.15 10.44 55.49 0.58 -26.57 16 23 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.10 1.50 5.39 -3.98 -0.02 1.48 16 28 N -0.45 -5.58 6.27 -6.06 -0.04 -5.61 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.15 1.54 7.81 -52.49 -0.41 1.13 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.43 6.95 -51.93 -0.36 1.06 16 37 H 0.08 1.42 7.62 -51.93 -0.40 1.03 16 38 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 39 H 0.06 1.00 8.12 -51.93 -0.42 0.57 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 42 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.13 1.91 4.09 -76.62 -0.31 1.59 16 45 H 0.07 1.03 8.07 -51.92 -0.42 0.62 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -32.72 354.32 -9.97 -42.68 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.82 Total: 0.28 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.02 Total: 2.13 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.53 Total: -57.79 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.72 -9.97 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036640553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.384 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds