Wall clock time and date at job start Tue Mar 31 2020 11:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38603 * 119.54936 * 2 1 4 4 C 1.38583 * 119.34954 * 180.02562 * 3 2 1 5 5 C 1.38628 * 118.49024 * 359.73214 * 4 3 2 6 6 C 1.39272 * 119.06159 * 0.52770 * 5 4 3 7 7 C 1.48165 * 119.72391 * 179.73308 * 6 5 4 8 8 O 1.21517 * 120.00014 * 22.62741 * 7 6 5 9 9 N 1.34777 * 119.99722 * 202.62394 * 7 6 5 10 10 C 1.46604 * 119.68230 * 180.12174 * 9 7 6 11 11 C 1.54198 * 110.15592 * 228.18392 * 10 9 7 12 12 C 1.51519 * 107.26847 * 308.04629 * 11 10 9 13 13 H 1.08994 * 109.28565 * 307.42772 * 12 11 10 14 14 C 1.55403 * 107.27982 * 65.67473 * 12 11 10 15 15 H 1.08995 * 111.48830 * 50.88037 * 14 12 11 16 16 C 1.53738 * 100.20530 * 168.75493 * 14 12 11 17 17 C 1.55285 * 101.87463 * 320.94701 * 16 14 12 18 18 N 1.45474 * 117.33453 * 182.36227 * 12 11 10 19 19 C 1.36943 * 126.40364 * 31.31482 * 18 12 11 20 20 H 1.07995 * 119.99958 * 359.97438 * 19 18 12 21 21 C 1.38810 * 120.00127 * 180.02562 * 19 18 12 22 22 N 1.31623 * 119.99531 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00394 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47482 * 89.99273 * 23 21 19 25 25 H 1.48497 * 109.47325 * 209.99751 * 23 21 19 26 26 H 1.48506 * 109.46873 * 329.99706 * 23 21 19 27 27 C 1.47719 * 119.68857 * 0.09764 * 9 7 6 28 28 N 1.31496 * 119.54908 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47500 * 269.98087 * 1 2 3 30 30 H 1.08998 * 109.47534 * 29.97873 * 1 2 3 31 31 H 1.09006 * 109.47235 * 149.98117 * 1 2 3 32 32 H 1.07993 * 120.32341 * 0.04293 * 3 2 1 33 33 H 1.08002 * 120.75457 * 179.97438 * 4 3 2 34 34 H 1.08006 * 120.47192 * 180.28361 * 5 4 3 35 35 H 1.08998 * 109.25200 * 348.08143 * 10 9 7 36 36 H 1.08995 * 109.25351 * 107.51786 * 10 9 7 37 37 H 1.09001 * 109.51858 * 188.82791 * 11 10 9 38 38 H 1.09004 * 110.31678 * 67.70823 * 11 10 9 39 39 H 1.08998 * 110.95630 * 202.79152 * 16 14 12 40 40 H 1.09002 * 110.95480 * 79.10275 * 16 14 12 41 41 H 1.09000 * 109.92026 * 141.81679 * 17 16 14 42 42 H 1.09003 * 109.91828 * 263.11662 * 17 16 14 43 43 H 0.97008 * 119.99708 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.06928 * 8.74974 * 27 9 7 45 45 H 1.08998 * 110.06860 * 247.17447 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2009 -0.0005 5 6 4.2334 -0.0198 0.0046 6 6 3.4821 -1.1925 -0.0011 7 6 4.1692 -2.5051 -0.0016 8 8 5.3100 -2.5940 0.4074 9 7 3.5288 -3.6007 -0.4557 10 6 4.2143 -4.8966 -0.4507 11 6 4.0511 -5.5894 -1.8185 12 6 2.5710 -5.6019 -2.1425 13 1 2.0229 -6.0343 -1.3055 14 6 2.1279 -4.1248 -2.3343 15 1 2.7802 -3.5996 -3.0319 16 6 0.7268 -4.3360 -2.9309 17 6 0.9592 -5.5505 -3.8702 18 7 2.1624 -6.2587 -3.3746 19 6 2.7751 -7.3314 -3.9656 20 1 3.6519 -7.7696 -3.5123 21 6 2.2699 -7.8548 -5.1478 22 7 1.2016 -7.3203 -5.7005 23 14 3.1061 -9.3175 -5.9543 24 1 2.5128 -10.5756 -5.4343 25 1 2.9121 -9.2496 -7.4250 26 1 4.5582 -9.2902 -5.6447 27 6 2.1428 -3.4844 -0.9533 28 7 2.1555 -1.1439 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8899 -0.5141 32 1 1.6485 2.1398 0.0007 33 1 4.1319 2.1271 -0.0010 34 1 5.3126 -0.0609 0.0090 35 1 5.2749 -4.7414 -0.2527 36 1 3.7909 -5.5241 0.3335 37 1 4.4257 -6.6111 -1.7563 38 1 4.5943 -5.0407 -2.5879 39 1 0.4082 -3.4607 -3.4970 40 1 0.0039 -4.5783 -2.1519 41 1 0.0966 -6.2160 -3.8371 42 1 1.1257 -5.2045 -4.8903 43 1 0.8483 -7.6862 -6.5265 44 1 1.8578 -2.4348 -1.0245 45 1 1.4609 -4.0140 -0.2879 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036640554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:41 Heat of formation + Delta-G solvation = 28.114195 kcal Electronic energy + Delta-G solvation = -26969.425795 eV Core-core repulsion = 23373.329428 eV Total energy + Delta-G solvation = -3596.096367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.06604 -40.72204 -39.57863 -36.82531 -34.43758 -34.08780 -33.96414 -32.73120 -31.27309 -29.60945 -28.66183 -26.94273 -25.93674 -24.56066 -23.77038 -22.93884 -21.84691 -21.38852 -20.57543 -18.75763 -18.28598 -17.64539 -17.03755 -16.99009 -16.79283 -16.37739 -16.10616 -15.69765 -15.37960 -15.19825 -14.83615 -14.73844 -14.39115 -14.32271 -13.93019 -13.79357 -13.34875 -13.16964 -13.10896 -13.03753 -13.03309 -12.79737 -12.70111 -12.45557 -12.13474 -12.01684 -11.78335 -11.63103 -11.49101 -11.37620 -11.19397 -10.85243 -10.71536 -10.03139 -9.94413 -9.70104 -8.87216 -7.84069 -5.18248 -0.32809 0.23117 1.44686 1.46190 1.54570 1.60824 1.85787 2.49568 2.74023 2.96538 3.34230 3.45714 3.54158 3.85430 3.86331 3.96535 4.04023 4.06102 4.11670 4.18568 4.24761 4.38562 4.44605 4.48302 4.62444 4.66828 4.74828 4.82096 4.83389 4.88648 4.90549 5.02341 5.06487 5.12144 5.16457 5.17707 5.17929 5.29303 5.46459 5.52954 5.54923 5.66972 5.75929 5.78862 6.20861 6.25179 6.70725 7.01667 7.09915 7.79328 8.47791 9.27527 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.003593 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.041899 B = 7791.585918 C = 8668.214477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.110 3.890 3 C -0.138 4.138 4 C -0.071 4.071 5 C -0.130 4.130 6 C 0.060 3.940 7 C 0.561 3.439 8 O -0.575 6.575 9 N -0.589 5.589 10 C 0.121 3.879 11 C -0.118 4.118 12 C 0.156 3.844 13 H 0.021 0.979 14 C -0.111 4.111 15 H 0.057 0.943 16 C -0.115 4.115 17 C 0.181 3.819 18 N -0.617 5.617 19 C -0.233 4.233 20 H 0.082 0.918 21 C -0.067 4.067 22 N -0.951 5.951 23 Si 0.974 3.026 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.271 1.271 27 C 0.109 3.891 28 N -0.468 5.468 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.005 0.995 42 H 0.017 0.983 43 H 0.245 0.755 44 H 0.150 0.850 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 20.940 13.594 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.030 4.030 3 C -0.157 4.157 4 C -0.096 4.096 5 C -0.151 4.151 6 C -0.076 4.076 7 C 0.349 3.651 8 O -0.455 6.455 9 N -0.318 5.318 10 C -0.001 4.001 11 C -0.157 4.157 12 C 0.049 3.951 13 H 0.039 0.961 14 C -0.132 4.132 15 H 0.076 0.924 16 C -0.154 4.154 17 C 0.056 3.944 18 N -0.341 5.341 19 C -0.362 4.362 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.803 3.197 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.196 1.196 27 C -0.012 4.012 28 N -0.182 5.182 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.196 0.804 33 H 0.195 0.805 34 H 0.160 0.840 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.023 0.977 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.166 0.834 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.104 19.908 13.634 24.154 hybrid contribution 0.975 -0.844 -1.001 1.633 sum -0.129 19.063 12.632 22.869 Atomic orbital electron populations 1.20874 0.86145 1.04890 1.04315 1.22091 0.98759 0.88102 0.94022 1.22635 0.94916 1.00276 0.97872 1.22030 0.95013 0.98239 0.94311 1.22193 1.02141 0.92342 0.98460 1.20859 0.90531 0.93385 1.02825 1.18453 0.85011 0.84099 0.77512 1.90720 1.18819 1.86008 1.49953 1.48274 1.15720 1.07541 1.60313 1.21657 0.98579 0.83192 0.96707 1.21806 0.97301 1.00423 0.96187 1.20890 0.93812 0.91781 0.88654 0.96117 1.22559 0.97594 0.96180 0.96862 0.92407 1.22537 0.95763 0.98037 0.99015 1.21333 0.87759 0.90530 0.94737 1.44513 1.30740 1.33934 1.24922 1.19383 1.08074 1.04959 1.03808 0.90047 1.25594 0.99003 1.02545 0.98862 1.70163 1.25294 1.43840 1.20781 0.85140 0.78254 0.79213 0.77132 1.21320 1.22152 1.19566 1.22787 0.80260 1.06396 0.91761 1.67361 1.07853 1.30390 1.12594 0.89077 0.87895 0.90809 0.80358 0.80538 0.84027 0.89473 0.90164 0.91139 0.93180 0.89951 0.90169 0.97654 0.96446 0.94525 0.83372 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.17 71.23 0.72 -0.32 16 2 C 0.11 1.75 6.78 42.69 0.29 2.04 16 3 C -0.14 -1.50 9.75 22.44 0.22 -1.28 16 4 C -0.07 -0.89 10.17 22.45 0.23 -0.66 16 5 C -0.13 -2.69 9.63 22.61 0.22 -2.47 16 6 C 0.06 1.57 6.40 41.89 0.27 1.84 16 7 C 0.56 18.15 7.58 86.88 0.66 18.81 16 8 O -0.57 -21.28 15.88 -3.77 -0.06 -21.34 16 9 N -0.59 -18.77 2.99 -820.59 -2.46 -21.23 16 10 C 0.12 3.92 6.35 86.77 0.55 4.47 16 11 C -0.12 -4.47 5.48 30.51 0.17 -4.30 16 12 C 0.16 6.51 2.59 45.53 0.12 6.63 16 13 H 0.02 0.90 7.92 -2.39 -0.02 0.88 16 14 C -0.11 -4.00 2.84 -9.97 -0.03 -4.02 16 15 H 0.06 2.29 8.09 -2.39 -0.02 2.27 16 16 C -0.11 -4.16 6.53 31.63 0.21 -3.95 16 17 C 0.18 9.07 5.45 86.85 0.47 9.54 16 18 N -0.62 -32.24 3.35 -669.85 -2.24 -34.48 16 19 C -0.23 -13.27 9.88 84.03 0.83 -12.44 16 20 H 0.08 4.44 7.23 -2.91 -0.02 4.42 16 21 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 22 N -0.95 -58.14 10.44 21.65 0.23 -57.92 16 23 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 25 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.11 3.23 5.42 85.89 0.47 3.70 16 28 N -0.47 -10.75 6.27 -173.08 -1.09 -11.83 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.49 8.08 -2.39 -0.02 0.47 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.14 2.92 7.81 -2.91 -0.02 2.90 16 35 H 0.09 2.85 6.95 -2.39 -0.02 2.83 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.69 7.63 -2.39 -0.02 2.67 16 38 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 39 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 41 H 0.01 0.29 7.77 -2.39 -0.02 0.27 16 42 H 0.02 0.98 7.21 -2.39 -0.02 0.96 16 43 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 44 H 0.15 4.05 4.08 -51.37 -0.21 3.84 16 45 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 Total: -1.00 -74.89 354.34 3.05 -71.85 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.79 Total: 12.00 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.85 Total: 14.14 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -5.56 Total: -125.46 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -74.89 3.05 -71.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036640554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.960 kcal (2) G-P(sol) polarization free energy of solvation -74.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds