Wall clock time and date at job start Tue Mar 31 2020 11:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38395 * 120.85899 * 2 1 4 4 C 1.38307 * 119.30837 * 180.02562 * 3 2 1 5 5 N 1.31952 * 121.07686 * 0.02562 * 4 3 2 6 6 C 1.31666 * 121.88702 * 359.72462 * 5 4 3 7 7 C 1.39565 * 120.55588 * 0.53667 * 6 5 4 8 8 C 1.47846 * 120.55509 * 179.75489 * 7 6 5 9 9 O 1.21549 * 119.99954 * 125.98167 * 8 7 6 10 10 N 1.34770 * 120.00094 * 305.97861 * 8 7 6 11 11 C 1.46826 * 120.30526 * 354.22807 * 10 8 7 12 12 C 1.52964 * 107.39334 * 234.99226 * 11 10 8 13 13 C 1.53543 * 109.95629 * 298.40727 * 12 11 10 14 14 H 1.09005 * 110.98248 * 289.24096 * 13 12 11 15 15 C 1.51778 * 112.12431 * 53.07002 * 13 12 11 16 16 H 1.08998 * 104.99139 * 206.69823 * 15 13 12 17 17 C 1.53385 * 105.83244 * 95.17825 * 15 13 12 18 18 C 1.54471 * 102.54017 * 29.49528 * 17 15 13 19 19 N 1.46867 * 106.65642 * 332.25654 * 18 17 15 20 20 C 1.36931 * 125.33980 * 195.40348 * 19 18 17 21 21 H 1.08001 * 119.99937 * 174.51844 * 20 19 18 22 22 C 1.38817 * 119.99727 * 354.52584 * 20 19 18 23 23 N 1.31608 * 120.00254 * 4.89703 * 22 20 19 24 24 Si 1.86804 * 119.99544 * 184.90217 * 22 20 19 25 25 H 1.48507 * 109.47058 * 95.00055 * 24 22 20 26 26 H 1.48504 * 109.46760 * 214.99450 * 24 22 20 27 27 H 1.48496 * 109.47314 * 334.99804 * 24 22 20 28 28 C 1.45651 * 120.30637 * 174.20367 * 10 8 7 29 29 H 1.08999 * 109.47165 * 274.87968 * 1 2 3 30 30 H 1.09000 * 109.46728 * 34.86926 * 1 2 3 31 31 H 1.08997 * 109.47312 * 154.87772 * 1 2 3 32 32 H 1.08008 * 120.34424 * 0.03721 * 3 2 1 33 33 H 1.08001 * 119.46115 * 180.02562 * 4 3 2 34 34 H 1.07998 * 119.72335 * 180.27049 * 6 5 4 35 35 H 1.08999 * 109.87228 * 354.46842 * 11 10 8 36 36 H 1.09001 * 109.87516 * 115.44404 * 11 10 8 37 37 H 1.09006 * 109.38311 * 58.68070 * 12 11 10 38 38 H 1.08994 * 109.38256 * 178.46612 * 12 11 10 39 39 H 1.08994 * 110.79893 * 271.22954 * 17 15 13 40 40 H 1.09001 * 110.79590 * 147.75349 * 17 15 13 41 41 H 1.09001 * 110.02455 * 212.95785 * 18 17 15 42 42 H 1.08998 * 110.02180 * 91.55806 * 18 17 15 43 43 H 0.96997 * 120.00510 * 179.97438 * 23 22 20 44 44 H 1.08997 * 108.43951 * 22.20297 * 28 10 8 45 45 H 1.09000 * 108.44183 * 264.89903 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5995 1.1506 -0.0005 5 7 4.2498 0.0024 -0.0016 6 6 3.6198 -1.1537 0.0033 7 6 2.2250 -1.2017 -0.0016 8 6 1.5176 -2.5000 -0.0016 9 8 0.6807 -2.7361 0.8477 10 7 1.8006 -3.4215 -0.9433 11 6 2.7155 -3.0981 -2.0452 12 6 1.9753 -3.3837 -3.3530 13 6 1.6062 -4.8720 -3.4320 14 1 2.4932 -5.4864 -3.5869 15 6 0.8505 -5.3396 -2.2016 16 1 1.0658 -6.4055 -2.1267 17 6 -0.6372 -5.2414 -2.5618 18 6 -0.6285 -5.4728 -4.0891 19 7 0.6789 -5.0146 -4.5768 20 6 0.9925 -4.7644 -5.8860 21 1 1.9550 -4.3454 -6.1401 22 6 0.0734 -5.0491 -6.8865 23 7 -1.1336 -5.4685 -6.5714 24 14 0.5498 -4.8371 -8.6803 25 1 1.0138 -6.1379 -9.2263 26 1 -0.6282 -4.3678 -9.4532 27 1 1.6425 -3.8373 -8.7874 28 6 1.2021 -4.7477 -0.8772 29 1 -0.3633 0.0874 1.0239 30 1 -0.3633 0.8432 -0.5875 31 1 -0.3634 -0.9304 -0.4363 32 1 1.6966 2.1345 0.0006 33 1 4.1559 2.0762 -0.0001 34 1 4.1871 -2.0726 0.0067 35 1 2.9935 -2.0452 -1.9990 36 1 3.6084 -3.7199 -1.9801 37 1 1.0679 -2.7811 -3.3941 38 1 2.6178 -3.1280 -4.1955 39 1 -1.0289 -4.2529 -2.3224 40 1 -1.2099 -6.0187 -2.0560 41 1 -1.4251 -4.8956 -4.5585 42 1 -0.7574 -6.5330 -4.3067 43 1 -1.7761 -5.6671 -7.2704 44 1 0.2956 -4.6872 -0.2750 45 1 1.9009 -5.4168 -0.3751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036675680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:27 Heat of formation + Delta-G solvation = 32.678600 kcal Electronic energy + Delta-G solvation = -27137.362235 eV Core-core repulsion = 23541.463795 eV Total energy + Delta-G solvation = -3595.898440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05366 -39.62736 -38.14197 -35.47870 -34.06871 -33.01291 -31.73464 -31.57974 -29.58675 -28.37905 -27.93855 -25.50232 -24.50518 -23.29647 -22.81702 -22.27854 -20.30187 -20.09810 -18.11472 -17.59602 -16.92828 -16.79876 -16.52714 -16.02106 -15.29630 -14.81987 -14.64777 -14.39894 -14.28497 -13.87936 -13.75544 -13.20295 -13.11859 -12.98385 -12.90422 -12.70673 -12.58860 -12.25800 -11.93028 -11.79472 -11.55625 -11.33163 -11.04428 -10.87005 -10.78024 -10.31672 -10.13687 -10.03848 -9.85762 -9.72477 -9.66123 -9.58125 -9.50641 -9.24567 -8.64407 -8.49369 -6.85427 -5.72377 -3.08731 0.61307 0.97208 2.59716 3.00005 3.37461 3.42725 3.44804 3.54503 4.12627 4.37198 4.44957 4.46472 4.51736 4.81594 4.96515 5.07595 5.16981 5.25215 5.27793 5.32747 5.36103 5.42851 5.45994 5.50779 5.60281 5.63690 5.83975 5.86969 5.90376 5.96679 6.02342 6.06487 6.21754 6.27478 6.33946 6.37095 6.54868 6.61460 6.72206 6.86082 7.03947 7.40744 7.55739 7.60336 7.65600 7.82400 8.11386 8.27286 9.19592 9.79824 10.45130 11.36395 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.003832 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.246524 B = 7305.024700 C = 7939.076415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.006 3.994 3 C -0.179 4.179 4 C 0.114 3.886 5 N -0.490 5.490 6 C 0.136 3.864 7 C -0.176 4.176 8 C 0.564 3.436 9 O -0.536 6.536 10 N -0.591 5.591 11 C 0.102 3.898 12 C -0.138 4.138 13 C 0.173 3.827 14 H 0.043 0.957 15 C -0.108 4.108 16 H 0.066 0.934 17 C -0.136 4.136 18 C 0.170 3.830 19 N -0.599 5.599 20 C -0.226 4.226 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.135 3.865 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.021 0.979 43 H 0.252 0.748 44 H 0.087 0.913 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 9.791 13.762 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.002 4.002 3 C -0.199 4.199 4 C -0.042 4.042 5 N -0.199 5.199 6 C -0.022 4.022 7 C -0.181 4.181 8 C 0.351 3.649 9 O -0.414 6.414 10 N -0.323 5.323 11 C -0.021 4.021 12 C -0.178 4.178 13 C 0.066 3.934 14 H 0.060 0.940 15 C -0.128 4.128 16 H 0.084 0.916 17 C -0.174 4.174 18 C 0.046 3.954 19 N -0.324 5.324 20 C -0.354 4.354 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.012 3.988 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.039 0.961 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.116 9.598 13.962 18.377 hybrid contribution -0.623 0.006 -1.135 1.295 sum 6.493 9.604 12.827 17.290 Atomic orbital electron populations 1.20904 0.89453 1.03871 1.03459 1.20380 0.97199 0.91440 0.91210 1.22010 0.95592 0.98569 1.03698 1.22910 0.91718 0.96411 0.93118 1.67704 1.40713 0.98249 1.13205 1.22949 0.90057 0.96660 0.92532 1.20869 0.95612 0.94294 1.07317 1.18054 0.82042 0.83128 0.81644 1.90773 1.33031 1.79239 1.38316 1.47711 1.45805 1.13306 1.25472 1.21971 0.92373 1.00878 0.86908 1.22498 1.00526 1.00213 0.94589 1.20545 0.93011 0.92755 0.87112 0.93966 1.20735 0.97894 1.00526 0.93601 0.91560 1.22685 0.93802 1.00558 1.00384 1.21297 0.89359 0.98064 0.86718 1.44707 1.07158 1.78901 1.01641 1.19007 1.00154 1.35375 0.80853 0.90510 1.24800 0.96227 1.01351 0.97960 1.69950 1.04387 1.51402 1.30957 0.86133 0.77256 0.77620 0.84960 1.21654 1.21791 1.20649 1.20395 0.99110 0.81827 0.97468 0.89699 0.90694 0.90526 0.84150 0.82337 0.82247 0.90394 0.91022 0.91400 0.91125 0.92610 0.92063 0.90578 0.96119 0.93775 0.89509 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.36 36.01 0.34 -0.98 16 2 C 0.01 0.07 5.95 -103.91 -0.62 -0.55 16 3 C -0.18 -1.65 9.82 -39.50 -0.39 -2.04 16 4 C 0.11 1.07 11.17 -17.47 -0.20 0.88 16 5 N -0.49 -5.66 10.35 -12.91 -0.13 -5.79 16 6 C 0.14 1.58 8.94 -17.13 -0.15 1.43 16 7 C -0.18 -2.26 4.61 -104.82 -0.48 -2.74 16 8 C 0.56 8.37 6.17 -12.33 -0.08 8.30 16 9 O -0.54 -9.34 15.48 5.32 0.08 -9.26 16 10 N -0.59 -8.44 3.00 -177.45 -0.53 -8.98 16 11 C 0.10 1.36 5.60 -3.88 -0.02 1.33 16 12 C -0.14 -2.36 5.19 -26.47 -0.14 -2.50 16 13 C 0.17 3.33 3.43 -67.44 -0.23 3.09 16 14 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 15 C -0.11 -1.81 2.45 -92.88 -0.23 -2.04 16 16 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 17 C -0.14 -2.54 6.37 -25.76 -0.16 -2.70 16 18 C 0.17 4.06 5.47 -3.07 -0.02 4.05 16 19 N -0.60 -14.58 3.04 -163.70 -0.50 -15.08 16 20 C -0.23 -6.03 9.82 -15.06 -0.15 -6.18 16 21 H 0.08 1.98 7.79 -52.49 -0.41 1.57 16 22 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 23 N -0.92 -26.52 10.28 55.49 0.57 -25.95 16 24 Si 0.91 21.71 29.56 -169.99 -5.02 16.68 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 C 0.13 1.97 5.98 -6.34 -0.04 1.93 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 31 H 0.08 1.02 6.70 -51.93 -0.35 0.67 16 32 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.16 1.59 7.76 -52.49 -0.41 1.19 16 35 H 0.08 0.97 5.32 -51.93 -0.28 0.70 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 2.05 6.63 -51.93 -0.34 1.71 16 42 H 0.02 0.54 8.05 -51.93 -0.42 0.12 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.09 1.34 6.75 -51.93 -0.35 0.99 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -31.55 353.48 -9.62 -41.17 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.75 Total: 0.87 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.66 Total: 1.00 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.59 Total: -55.79 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.55 -9.62 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036675680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.849 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds