Wall clock time and date at job start Tue Mar 31 2020 11:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38395 * 120.85899 * 2 1 4 4 C 1.38307 * 119.30837 * 180.02562 * 3 2 1 5 5 N 1.31952 * 121.07686 * 0.02562 * 4 3 2 6 6 C 1.31666 * 121.88702 * 359.72462 * 5 4 3 7 7 C 1.39565 * 120.55588 * 0.53667 * 6 5 4 8 8 C 1.47846 * 120.55509 * 179.75489 * 7 6 5 9 9 O 1.21549 * 119.99954 * 125.98167 * 8 7 6 10 10 N 1.34770 * 120.00094 * 305.97861 * 8 7 6 11 11 C 1.46826 * 120.30526 * 354.22807 * 10 8 7 12 12 C 1.52964 * 107.39334 * 234.99226 * 11 10 8 13 13 C 1.53543 * 109.95629 * 298.40727 * 12 11 10 14 14 H 1.09005 * 110.98248 * 289.24096 * 13 12 11 15 15 C 1.51778 * 112.12431 * 53.07002 * 13 12 11 16 16 H 1.08998 * 104.99139 * 206.69823 * 15 13 12 17 17 C 1.53385 * 105.83244 * 95.17825 * 15 13 12 18 18 C 1.54471 * 102.54017 * 29.49528 * 17 15 13 19 19 N 1.46867 * 106.65642 * 332.25654 * 18 17 15 20 20 C 1.36931 * 125.33980 * 195.40348 * 19 18 17 21 21 H 1.08001 * 119.99937 * 174.51844 * 20 19 18 22 22 C 1.38817 * 119.99727 * 354.52584 * 20 19 18 23 23 N 1.31608 * 120.00254 * 4.89703 * 22 20 19 24 24 Si 1.86804 * 119.99544 * 184.90217 * 22 20 19 25 25 H 1.48507 * 109.47058 * 95.00055 * 24 22 20 26 26 H 1.48504 * 109.46760 * 214.99450 * 24 22 20 27 27 H 1.48496 * 109.47314 * 334.99804 * 24 22 20 28 28 C 1.45651 * 120.30637 * 174.20367 * 10 8 7 29 29 H 1.08999 * 109.47165 * 274.87968 * 1 2 3 30 30 H 1.09000 * 109.46728 * 34.86926 * 1 2 3 31 31 H 1.08997 * 109.47312 * 154.87772 * 1 2 3 32 32 H 1.08008 * 120.34424 * 0.03721 * 3 2 1 33 33 H 1.08001 * 119.46115 * 180.02562 * 4 3 2 34 34 H 1.07998 * 119.72335 * 180.27049 * 6 5 4 35 35 H 1.08999 * 109.87228 * 354.46842 * 11 10 8 36 36 H 1.09001 * 109.87516 * 115.44404 * 11 10 8 37 37 H 1.09006 * 109.38311 * 58.68070 * 12 11 10 38 38 H 1.08994 * 109.38256 * 178.46612 * 12 11 10 39 39 H 1.08994 * 110.79893 * 271.22954 * 17 15 13 40 40 H 1.09001 * 110.79590 * 147.75349 * 17 15 13 41 41 H 1.09001 * 110.02455 * 212.95785 * 18 17 15 42 42 H 1.08998 * 110.02180 * 91.55806 * 18 17 15 43 43 H 0.96997 * 120.00510 * 179.97438 * 23 22 20 44 44 H 1.08997 * 108.43951 * 22.20297 * 28 10 8 45 45 H 1.09000 * 108.44183 * 264.89903 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5995 1.1506 -0.0005 5 7 4.2498 0.0024 -0.0016 6 6 3.6198 -1.1537 0.0033 7 6 2.2250 -1.2017 -0.0016 8 6 1.5176 -2.5000 -0.0016 9 8 0.6807 -2.7361 0.8477 10 7 1.8006 -3.4215 -0.9433 11 6 2.7155 -3.0981 -2.0452 12 6 1.9753 -3.3837 -3.3530 13 6 1.6062 -4.8720 -3.4320 14 1 2.4932 -5.4864 -3.5869 15 6 0.8505 -5.3396 -2.2016 16 1 1.0658 -6.4055 -2.1267 17 6 -0.6372 -5.2414 -2.5618 18 6 -0.6285 -5.4728 -4.0891 19 7 0.6789 -5.0146 -4.5768 20 6 0.9925 -4.7644 -5.8860 21 1 1.9550 -4.3454 -6.1401 22 6 0.0734 -5.0491 -6.8865 23 7 -1.1336 -5.4685 -6.5714 24 14 0.5498 -4.8371 -8.6803 25 1 1.0138 -6.1379 -9.2263 26 1 -0.6282 -4.3678 -9.4532 27 1 1.6425 -3.8373 -8.7874 28 6 1.2021 -4.7477 -0.8772 29 1 -0.3633 0.0874 1.0239 30 1 -0.3633 0.8432 -0.5875 31 1 -0.3634 -0.9304 -0.4363 32 1 1.6966 2.1345 0.0006 33 1 4.1559 2.0762 -0.0001 34 1 4.1871 -2.0726 0.0067 35 1 2.9935 -2.0452 -1.9990 36 1 3.6084 -3.7199 -1.9801 37 1 1.0679 -2.7811 -3.3941 38 1 2.6178 -3.1280 -4.1955 39 1 -1.0289 -4.2529 -2.3224 40 1 -1.2099 -6.0187 -2.0560 41 1 -1.4251 -4.8956 -4.5585 42 1 -0.7574 -6.5330 -4.3067 43 1 -1.7761 -5.6671 -7.2704 44 1 0.2956 -4.6872 -0.2750 45 1 1.9009 -5.4168 -0.3751 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036675680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:26 Heat of formation + Delta-G solvation = 13.727063 kcal Electronic energy + Delta-G solvation = -27138.184035 eV Core-core repulsion = 23541.463795 eV Total energy + Delta-G solvation = -3596.720240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06142 -40.75826 -39.48940 -36.89630 -34.91572 -34.70550 -33.20424 -32.64126 -31.17300 -29.85422 -28.91695 -26.96663 -25.93023 -24.49930 -24.11649 -23.20585 -22.12435 -21.27037 -19.45042 -18.83716 -18.66284 -17.72334 -17.33084 -17.15718 -16.79693 -16.59764 -15.83591 -15.70166 -15.44825 -15.16951 -14.80451 -14.44224 -14.37142 -14.25162 -13.93887 -13.83842 -13.70870 -13.59070 -13.37872 -13.17282 -13.03236 -12.77948 -12.65993 -12.65416 -12.41218 -12.00416 -11.71396 -11.66244 -11.35138 -11.31781 -11.03604 -10.69084 -10.55872 -10.43315 -10.11233 -9.69982 -8.85050 -7.80926 -5.18552 -0.21296 0.17405 1.46075 1.47419 1.50308 1.56013 1.92346 2.49524 2.73539 3.24507 3.33961 3.51397 3.58442 3.65239 3.71139 3.77362 3.78817 4.01510 4.05321 4.09789 4.24503 4.39067 4.43139 4.49505 4.55755 4.58892 4.63483 4.68893 4.72412 4.73339 4.83280 4.86114 4.88320 5.03745 5.08071 5.10682 5.24077 5.35026 5.47605 5.50866 5.57099 5.62184 5.66489 5.79086 6.24331 6.27743 6.86892 6.99767 7.12245 7.80490 8.44297 9.26955 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.003832 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.246524 B = 7305.024700 C = 7939.076415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.010 4.010 3 C -0.171 4.171 4 C 0.116 3.884 5 N -0.507 5.507 6 C 0.135 3.865 7 C -0.198 4.198 8 C 0.566 3.434 9 O -0.568 6.568 10 N -0.593 5.593 11 C 0.114 3.886 12 C -0.126 4.126 13 C 0.166 3.834 14 H 0.051 0.949 15 C -0.096 4.096 16 H 0.077 0.923 17 C -0.122 4.122 18 C 0.178 3.822 19 N -0.619 5.619 20 C -0.229 4.229 21 H 0.085 0.915 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.973 3.027 25 H -0.289 1.289 26 H -0.299 1.299 27 H -0.266 1.266 28 C 0.139 3.861 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.173 0.827 33 H 0.194 0.806 34 H 0.173 0.827 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.035 0.965 42 H -0.010 1.010 43 H 0.244 0.756 44 H 0.078 0.922 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.232 11.460 14.920 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.018 4.018 3 C -0.190 4.190 4 C -0.039 4.039 5 N -0.216 5.216 6 C -0.023 4.023 7 C -0.203 4.203 8 C 0.355 3.645 9 O -0.448 6.448 10 N -0.324 5.324 11 C -0.008 4.008 12 C -0.167 4.167 13 C 0.060 3.940 14 H 0.068 0.932 15 C -0.116 4.116 16 H 0.096 0.904 17 C -0.161 4.161 18 C 0.052 3.948 19 N -0.344 5.344 20 C -0.358 4.358 21 H 0.103 0.897 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.802 3.198 25 H -0.217 1.217 26 H -0.226 1.226 27 H -0.190 1.190 28 C 0.016 3.984 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.190 0.810 33 H 0.210 0.790 34 H 0.190 0.810 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.008 0.992 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.615 11.281 15.141 21.189 hybrid contribution -1.379 -0.439 -1.472 2.064 sum 8.236 10.842 13.669 19.293 Atomic orbital electron populations 1.20870 0.89563 1.03121 1.03783 1.20619 0.97443 0.92106 0.91677 1.22337 0.95670 0.98904 1.02106 1.23535 0.92141 0.96993 0.91226 1.67778 1.41140 0.98791 1.13857 1.23107 0.89495 0.97442 0.92219 1.20807 0.96246 0.93560 1.09668 1.18372 0.81466 0.83639 0.81035 1.90748 1.34543 1.79886 1.39638 1.47756 1.45825 1.13178 1.25604 1.21938 0.92294 1.02382 0.84193 1.22270 0.99559 0.97922 0.96907 1.20818 0.92553 0.94252 0.86333 0.93167 1.20662 0.95668 1.01478 0.93761 0.90443 1.22522 0.96011 1.00899 0.96638 1.21004 0.88499 0.95360 0.89892 1.44997 1.08373 1.78680 1.02378 1.19396 1.00109 1.34068 0.82186 0.89714 1.25611 0.96357 1.02190 1.01920 1.70189 1.05340 1.53174 1.31486 0.85124 0.76884 0.77616 0.80140 1.21674 1.22571 1.19009 1.20327 0.99776 0.82595 0.95697 0.89376 0.88553 0.93568 0.80985 0.78965 0.81039 0.89106 0.88151 0.94433 0.91538 0.93274 0.89839 0.94659 0.99156 0.94657 0.90317 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 9.36 71.24 0.67 -1.79 16 2 C -0.01 -0.22 5.95 -19.40 -0.12 -0.33 16 3 C -0.17 -2.59 9.82 22.32 0.22 -2.37 16 4 C 0.12 1.77 11.17 84.69 0.95 2.72 16 5 N -0.51 -10.22 10.35 -194.76 -2.01 -12.23 16 6 C 0.14 2.83 8.94 85.04 0.76 3.59 16 7 C -0.20 -4.77 4.61 -19.99 -0.09 -4.86 16 8 C 0.57 16.25 6.17 86.79 0.54 16.79 16 9 O -0.57 -19.67 15.48 -3.87 -0.06 -19.73 16 10 N -0.59 -15.94 3.00 -833.60 -2.50 -18.44 16 11 C 0.11 2.79 5.60 86.31 0.48 3.27 16 12 C -0.13 -4.22 5.19 30.76 0.16 -4.06 16 13 C 0.17 6.26 3.43 44.48 0.15 6.41 16 14 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 15 C -0.10 -3.12 2.45 -12.26 -0.03 -3.15 16 16 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 17 C -0.12 -4.62 6.37 31.22 0.20 -4.43 16 18 C 0.18 8.86 5.47 86.81 0.47 9.33 16 19 N -0.62 -30.75 3.04 -671.83 -2.04 -32.80 16 20 C -0.23 -12.39 9.82 84.04 0.83 -11.57 16 21 H 0.09 4.35 7.79 -2.91 -0.02 4.32 16 22 C -0.07 -3.84 5.48 84.86 0.47 -3.38 16 23 N -0.95 -57.38 10.28 21.65 0.22 -57.16 16 24 Si 0.97 45.41 29.56 68.60 2.03 47.44 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 C 0.14 3.79 5.98 85.35 0.51 4.30 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.10 1.53 8.13 -2.39 -0.02 1.51 16 31 H 0.05 1.24 6.70 -2.39 -0.02 1.23 16 32 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 33 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.17 2.97 7.76 -2.91 -0.02 2.95 16 35 H 0.09 2.05 5.32 -2.39 -0.01 2.03 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.04 2.03 6.63 -2.39 -0.02 2.01 16 42 H -0.01 -0.53 8.05 -2.39 -0.02 -0.55 16 43 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.08 2.34 6.75 -2.39 -0.02 2.33 16 45 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.78 353.48 2.78 -69.01 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.98 Total: 13.43 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 6.16 Total: 10.48 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -6.34 Total: -120.63 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.06 Total: -19.73 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -71.78 2.78 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036675680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.732 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds