Wall clock time and date at job start Tue Mar 31 2020 11:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38394 * 120.85590 * 2 1 4 4 C 1.38304 * 119.30200 * 179.97438 * 3 2 1 5 5 N 1.31963 * 121.08368 * 0.02562 * 4 3 2 6 6 C 1.31658 * 121.87915 * 359.97438 * 5 4 3 7 7 C 1.39567 * 120.56341 * 359.74680 * 6 5 4 8 8 C 1.47839 * 120.55853 * 180.28380 * 7 6 5 9 9 O 1.21552 * 120.00410 * 124.94191 * 8 7 6 10 10 N 1.34775 * 119.99800 * 304.94072 * 8 7 6 11 11 C 1.46599 * 119.68726 * 4.01513 * 10 8 7 12 12 C 1.53537 * 110.81998 * 227.73133 * 11 10 8 13 13 C 1.51522 * 107.42189 * 309.22003 * 12 11 10 14 14 H 1.08995 * 108.82066 * 306.40642 * 13 12 11 15 15 C 1.55366 * 107.78360 * 64.71226 * 13 12 11 16 16 H 1.09001 * 112.27647 * 50.83358 * 15 13 12 17 17 C 1.53740 * 100.22415 * 169.05755 * 15 13 12 18 18 C 1.55283 * 101.84398 * 320.90569 * 17 15 13 19 19 N 1.45470 * 117.33709 * 181.74409 * 13 12 11 20 20 C 1.36936 * 126.40683 * 30.64828 * 19 13 12 21 21 H 1.07998 * 119.99904 * 354.89927 * 20 19 13 22 22 C 1.38817 * 119.99952 * 174.89661 * 20 19 13 23 23 N 1.31617 * 119.99896 * 5.03685 * 22 20 19 24 24 Si 1.86802 * 119.99749 * 185.02963 * 22 20 19 25 25 H 1.48499 * 109.46768 * 95.00010 * 24 22 20 26 26 H 1.48493 * 109.47191 * 215.00173 * 24 22 20 27 27 H 1.48505 * 109.47077 * 335.00320 * 24 22 20 28 28 C 1.47719 * 119.68483 * 184.28782 * 10 8 7 29 29 H 1.08997 * 109.47679 * 85.07171 * 1 2 3 30 30 H 1.09006 * 109.46720 * 325.07207 * 1 2 3 31 31 H 1.08999 * 109.47035 * 205.07523 * 1 2 3 32 32 H 1.07995 * 120.34865 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.45767 * 180.02562 * 4 3 2 34 34 H 1.07992 * 119.71833 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.25181 * 348.10148 * 11 10 8 36 36 H 1.08999 * 109.25176 * 107.53265 * 11 10 8 37 37 H 1.08995 * 109.96406 * 189.66667 * 12 11 10 38 38 H 1.08999 * 109.77836 * 68.66918 * 12 11 10 39 39 H 1.09005 * 110.95517 * 79.04823 * 17 15 13 40 40 H 1.08999 * 110.95491 * 202.77082 * 17 15 13 41 41 H 1.09001 * 109.92008 * 141.82868 * 18 17 15 42 42 H 1.08997 * 109.92301 * 262.93094 * 18 17 15 43 43 H 0.97003 * 119.99401 * 179.97438 * 23 22 20 44 44 H 1.09002 * 110.07383 * 247.15231 * 28 10 8 45 45 H 1.09001 * 110.07146 * 8.73275 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0023 0.0005 6 6 3.6197 -1.1537 0.0005 7 6 2.2249 -1.2017 0.0058 8 6 1.5175 -2.4999 0.0122 9 8 0.7005 -2.7427 0.8788 10 7 1.7786 -3.4142 -0.9430 11 6 2.8276 -3.1509 -1.9328 12 6 2.3241 -3.4454 -3.3530 13 6 1.7158 -4.8331 -3.3401 14 1 2.4466 -5.5336 -2.9361 15 6 0.4728 -4.7977 -2.4086 16 1 -0.2037 -3.9788 -2.6533 17 6 -0.1563 -6.1605 -2.7411 18 6 0.0723 -6.2515 -4.2743 19 7 1.2014 -5.3488 -4.5993 20 6 1.6725 -5.0548 -5.8510 21 1 2.4512 -4.3170 -5.9754 22 6 1.1491 -5.7054 -6.9601 23 7 0.1335 -6.5308 -6.8203 24 14 1.8862 -5.4090 -8.6507 25 1 2.8877 -6.4649 -8.9460 26 1 0.8103 -5.4473 -9.6734 27 1 2.5467 -4.0792 -8.6766 28 6 1.0009 -4.6693 -0.9864 29 1 -0.3634 0.0883 -1.0238 30 1 -0.3633 0.8426 0.5884 31 1 -0.3633 -0.9308 0.4355 32 1 1.6966 2.1345 0.0004 33 1 4.1558 2.0762 0.0010 34 1 4.1870 -2.0726 0.0010 35 1 3.1280 -2.1052 -1.8685 36 1 3.6884 -3.7853 -1.7214 37 1 3.1555 -3.4117 -4.0570 38 1 1.5689 -2.7122 -3.6361 39 1 0.3618 -6.9663 -2.2211 40 1 -1.2203 -6.1668 -2.5046 41 1 0.3234 -7.2752 -4.5522 42 1 -0.8259 -5.9331 -4.8033 43 1 -0.2324 -6.9850 -7.5954 44 1 1.6442 -5.5165 -0.7485 45 1 0.1705 -4.6194 -0.2821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036675682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:33 Heat of formation + Delta-G solvation = 14.742517 kcal Electronic energy + Delta-G solvation = -27002.089781 eV Core-core repulsion = 23405.413574 eV Total energy + Delta-G solvation = -3596.676207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.09721 -40.76281 -39.50844 -36.92793 -34.89655 -34.62600 -33.11178 -32.73764 -31.19194 -29.72816 -28.84276 -26.82204 -25.91777 -24.35072 -23.90487 -23.15840 -21.89728 -21.35831 -20.42664 -18.87380 -18.13719 -17.63705 -17.35749 -17.23332 -16.92627 -16.10281 -16.01656 -15.67378 -15.50786 -15.18234 -14.94003 -14.71640 -14.34703 -14.20438 -13.94552 -13.81680 -13.69697 -13.57240 -13.31129 -13.11893 -13.10549 -12.80964 -12.69501 -12.49299 -12.14301 -12.00168 -11.79815 -11.63964 -11.52669 -11.24595 -11.02072 -10.70487 -10.54165 -10.43975 -10.09758 -9.78803 -8.86630 -7.84342 -5.18071 -0.21904 0.16559 1.46172 1.46763 1.47603 1.55966 1.86289 2.50412 2.71403 3.22011 3.35211 3.45997 3.52639 3.64287 3.76219 3.78928 3.85063 3.98275 4.06513 4.15408 4.19143 4.35620 4.40712 4.47980 4.52790 4.63355 4.63591 4.67456 4.70372 4.76466 4.79249 4.84261 4.87753 5.01173 5.07217 5.11495 5.17540 5.27230 5.42004 5.51947 5.52636 5.61596 5.66185 5.76269 6.20555 6.23330 6.85831 6.96415 7.09545 7.79678 8.48462 9.28039 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.003725 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.436054 B = 7515.081887 C = 8365.749355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.008 4.008 3 C -0.171 4.171 4 C 0.116 3.884 5 N -0.507 5.507 6 C 0.132 3.868 7 C -0.199 4.199 8 C 0.567 3.433 9 O -0.567 6.567 10 N -0.597 5.597 11 C 0.116 3.884 12 C -0.122 4.122 13 C 0.159 3.841 14 H 0.026 0.974 15 C -0.108 4.108 16 H 0.062 0.938 17 C -0.121 4.121 18 C 0.183 3.817 19 N -0.616 5.616 20 C -0.231 4.231 21 H 0.086 0.914 22 C -0.068 4.068 23 N -0.953 5.953 24 Si 0.972 3.028 25 H -0.289 1.289 26 H -0.298 1.298 27 H -0.266 1.266 28 C 0.135 3.865 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.171 0.829 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.007 0.993 42 H 0.012 0.988 43 H 0.245 0.755 44 H 0.089 0.911 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.144 14.297 15.403 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.016 4.016 3 C -0.190 4.190 4 C -0.040 4.040 5 N -0.217 5.217 6 C -0.026 4.026 7 C -0.205 4.205 8 C 0.356 3.644 9 O -0.447 6.447 10 N -0.328 5.328 11 C -0.007 4.007 12 C -0.161 4.161 13 C 0.052 3.948 14 H 0.044 0.956 15 C -0.129 4.129 16 H 0.081 0.919 17 C -0.160 4.160 18 C 0.058 3.942 19 N -0.340 5.340 20 C -0.360 4.360 21 H 0.104 0.896 22 C -0.260 4.260 23 N -0.602 5.602 24 Si 0.801 3.199 25 H -0.216 1.216 26 H -0.225 1.225 27 H -0.191 1.191 28 C 0.013 3.987 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.191 0.809 33 H 0.210 0.790 34 H 0.188 0.812 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.025 0.975 42 H 0.030 0.970 43 H 0.054 0.946 44 H 0.107 0.893 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.620 14.108 15.619 21.785 hybrid contribution -0.973 -0.462 -1.510 1.855 sum 4.647 13.646 14.109 20.171 Atomic orbital electron populations 1.21050 0.89444 1.04724 1.03639 1.20608 0.97610 0.91880 0.91512 1.22347 0.95608 0.98994 1.02041 1.23543 0.92245 0.96940 0.91235 1.67779 1.41199 0.98809 1.13873 1.23119 0.89662 0.97441 0.92407 1.20809 0.96185 0.93778 1.09692 1.18407 0.81401 0.83582 0.81038 1.90729 1.36545 1.79421 1.37993 1.48301 1.37010 1.18578 1.28941 1.21895 0.89469 1.02965 0.86382 1.21724 1.00942 0.96976 0.96481 1.20851 0.93946 0.93836 0.86206 0.95644 1.22458 0.97561 0.97808 0.95059 0.91915 1.22586 1.01082 0.96444 0.95839 1.21286 0.89601 0.92365 0.90965 1.44493 1.36020 1.52267 1.01219 1.19402 1.15792 1.17663 0.83117 0.89578 1.25609 0.99182 0.99722 1.01523 1.70170 1.27005 1.33907 1.29109 0.85140 0.77054 0.78015 0.79661 1.21591 1.22547 1.19055 1.21572 0.96002 0.85282 0.95854 0.89921 0.88182 0.91658 0.80920 0.79022 0.81196 0.88615 0.89001 0.90586 0.93101 0.90145 0.90331 0.97486 0.96954 0.94594 0.89277 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.76 71.24 0.70 -1.83 16 2 C -0.01 -0.16 5.95 -19.40 -0.12 -0.27 16 3 C -0.17 -2.45 9.82 22.32 0.22 -2.24 16 4 C 0.12 1.72 11.17 84.69 0.95 2.67 16 5 N -0.51 -10.19 10.35 -194.76 -2.01 -12.21 16 6 C 0.13 2.73 8.69 85.04 0.74 3.47 16 7 C -0.20 -4.66 4.76 -19.99 -0.10 -4.76 16 8 C 0.57 15.73 6.57 86.78 0.57 16.30 16 9 O -0.57 -18.88 14.65 -3.88 -0.06 -18.94 16 10 N -0.60 -15.80 3.01 -822.24 -2.47 -18.27 16 11 C 0.12 2.78 5.30 86.54 0.46 3.23 16 12 C -0.12 -3.90 5.44 30.29 0.16 -3.74 16 13 C 0.16 6.03 2.57 45.51 0.12 6.15 16 14 H 0.03 0.98 7.92 -2.39 -0.02 0.96 16 15 C -0.11 -3.65 2.85 -9.98 -0.03 -3.68 16 16 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 17 C -0.12 -4.30 6.54 31.63 0.21 -4.09 16 18 C 0.18 8.93 5.44 86.84 0.47 9.41 16 19 N -0.62 -30.60 3.35 -669.89 -2.24 -32.84 16 20 C -0.23 -12.52 9.89 84.03 0.83 -11.69 16 21 H 0.09 4.41 7.18 -2.91 -0.02 4.39 16 22 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 23 N -0.95 -57.30 10.47 21.65 0.23 -57.07 16 24 Si 0.97 45.33 29.56 68.60 2.03 47.36 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 28 C 0.13 3.72 5.94 85.90 0.51 4.23 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.36 8.13 -2.38 -0.02 1.34 16 31 H 0.06 1.63 5.75 -2.39 -0.01 1.61 16 32 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 33 H 0.19 1.45 8.06 -2.91 -0.02 1.42 16 34 H 0.17 2.99 7.44 -2.91 -0.02 2.97 16 35 H 0.10 2.07 4.91 -2.39 -0.01 2.06 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.46 7.63 -2.39 -0.02 2.44 16 38 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 39 H 0.08 2.55 8.12 -2.38 -0.02 2.53 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.01 0.38 7.65 -2.39 -0.02 0.36 16 42 H 0.01 0.68 7.37 -2.39 -0.02 0.66 16 43 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 45 H 0.09 2.58 7.02 -2.39 -0.02 2.57 16 Total: -1.00 -71.39 351.18 2.61 -68.78 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.99 Total: 13.37 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 6.16 Total: 9.82 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -6.50 Total: -120.39 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.06 Total: -18.94 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.39 2.61 -68.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036675682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.520 kcal (2) G-P(sol) polarization free energy of solvation -71.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds