Wall clock time and date at job start Tue Mar 31 2020 11:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38179 * 120.49814 * 2 1 4 4 N 1.31794 * 120.88884 * 180.02562 * 3 2 1 5 5 C 1.31822 * 122.05573 * 359.97438 * 4 3 2 6 6 C 1.38127 * 120.89440 * 359.97438 * 5 4 3 7 7 C 1.39790 * 120.49950 * 179.72523 * 2 1 3 8 8 C 1.48156 * 120.92247 * 359.97196 * 7 2 1 9 9 O 1.21509 * 119.99831 * 46.87650 * 8 7 2 10 10 N 1.34771 * 119.99693 * 226.87100 * 8 7 2 11 11 C 1.46598 * 119.69050 * 5.46312 * 10 8 7 12 12 C 1.54374 * 110.35293 * 132.09378 * 11 10 8 13 13 C 1.51521 * 107.26339 * 51.31860 * 12 11 10 14 14 H 1.09003 * 108.81277 * 53.30047 * 13 12 11 15 15 C 1.55356 * 107.78507 * 295.00088 * 13 12 11 16 16 H 1.09008 * 112.27196 * 309.15474 * 15 13 12 17 17 C 1.53743 * 100.22432 * 190.94002 * 15 13 12 18 18 C 1.55285 * 101.84425 * 39.08912 * 17 15 13 19 19 N 1.45464 * 117.34176 * 177.95853 * 13 12 11 20 20 C 1.36937 * 126.40719 * 329.35883 * 19 13 12 21 21 H 1.08008 * 119.99799 * 359.96908 * 20 19 13 22 22 C 1.38807 * 120.00516 * 179.97438 * 20 19 13 23 23 N 1.31630 * 119.99882 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00502 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47516 * 89.99344 * 24 22 20 26 26 H 1.48503 * 109.47103 * 209.99845 * 24 22 20 27 27 H 1.48504 * 109.46554 * 329.99409 * 24 22 20 28 28 C 1.47725 * 119.68529 * 185.73373 * 10 8 7 29 29 H 1.09005 * 109.47295 * 95.38972 * 1 2 3 30 30 H 1.08998 * 109.47080 * 215.39261 * 1 2 3 31 31 H 1.09006 * 109.47083 * 335.39086 * 1 2 3 32 32 H 1.07997 * 119.55270 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.55169 * 180.02562 * 5 4 3 34 34 H 1.08008 * 120.49683 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.25740 * 252.46494 * 11 10 8 36 36 H 1.09005 * 109.24970 * 11.89795 * 11 10 8 37 37 H 1.09008 * 110.04242 * 291.81727 * 12 11 10 38 38 H 1.08998 * 109.80385 * 170.68927 * 12 11 10 39 39 H 1.09000 * 110.95266 * 157.22767 * 17 15 13 40 40 H 1.09002 * 110.94926 * 280.94745 * 17 15 13 41 41 H 1.08999 * 109.92516 * 96.86666 * 18 17 15 42 42 H 1.09001 * 109.91762 * 218.17697 * 18 17 15 43 43 H 0.96998 * 119.99986 * 180.02562 * 23 22 20 44 44 H 1.09008 * 110.06459 * 351.26765 * 28 10 8 45 45 H 1.09000 * 110.07093 * 112.84719 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2334 0.0872 -0.0005 6 6 3.6137 -1.1473 0.0005 7 6 2.2165 -1.2045 0.0058 8 6 1.5078 -2.5055 0.0126 9 8 0.5851 -2.6988 -0.7541 10 7 1.8865 -3.4746 0.8692 11 6 2.9188 -3.1948 1.8718 12 6 2.4633 -3.6853 3.2628 13 6 2.0214 -5.1264 3.1090 14 1 2.8240 -5.6915 2.6348 15 6 0.7710 -5.1435 2.1872 16 1 0.0064 -4.4391 2.5149 17 6 0.3101 -6.5976 2.3794 18 6 0.5677 -6.8158 3.8951 19 7 1.5874 -5.8240 4.3094 20 6 2.0371 -5.6049 5.5841 21 1 2.7881 -4.8511 5.7698 22 6 1.5280 -6.3515 6.6378 23 7 0.6125 -7.2698 6.4116 24 14 2.1409 -6.0521 8.3768 25 1 1.2973 -5.0179 9.0279 26 1 2.0631 -7.3155 9.1534 27 1 3.5498 -5.5849 8.3313 28 6 1.2618 -4.8106 0.7850 29 1 -0.3634 -0.0965 -1.0232 30 1 -0.3633 -0.8377 0.5952 31 1 -0.3633 0.9344 0.4280 32 1 1.6691 2.1264 -0.0004 33 1 5.3120 0.1417 -0.0005 34 1 4.1995 -2.0547 0.0009 35 1 3.8403 -3.7049 1.5911 36 1 3.1007 -2.1207 1.9102 37 1 1.6308 -3.0783 3.6188 38 1 3.2941 -3.6253 3.9659 39 1 -0.7489 -6.7051 2.1446 40 1 0.9122 -7.2799 1.7794 41 1 -0.3538 -6.6571 4.4552 42 1 0.9406 -7.8256 4.0668 43 1 0.2565 -7.7913 7.1479 44 1 0.4221 -4.7877 0.0903 45 1 1.9968 -5.5475 0.4612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036709041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:58 Heat of formation + Delta-G solvation = 34.452200 kcal Electronic energy + Delta-G solvation = -26946.974220 eV Core-core repulsion = 23351.152689 eV Total energy + Delta-G solvation = -3595.821531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10989 -39.68006 -38.21847 -35.55110 -33.76368 -32.97949 -32.15149 -31.63667 -29.65966 -28.24659 -27.52690 -25.46576 -24.57038 -23.21312 -22.68569 -22.19146 -20.28477 -20.00613 -19.31792 -17.68874 -16.94618 -16.49146 -16.12696 -15.68656 -15.15987 -15.02424 -14.91821 -14.42049 -14.31472 -13.92853 -13.67104 -13.64749 -13.26295 -13.01786 -12.92096 -12.75218 -12.48446 -12.41359 -11.84282 -11.71103 -11.55033 -11.45872 -10.91216 -10.85277 -10.78099 -10.41661 -10.18615 -10.08817 -9.97832 -9.88405 -9.66922 -9.58294 -9.45699 -9.18661 -8.66545 -8.63830 -6.88479 -5.75695 -3.09261 0.63095 0.81324 2.57323 2.88684 3.36681 3.41695 3.43730 3.52467 4.13978 4.19976 4.45222 4.51865 4.56064 4.71009 4.92834 4.97388 5.13015 5.16284 5.26498 5.31320 5.42961 5.46441 5.49448 5.50790 5.53831 5.59342 5.73205 5.80532 5.84423 5.94831 5.99842 6.07929 6.10830 6.16782 6.28049 6.35279 6.41397 6.55350 6.57550 6.75086 6.99840 7.30756 7.50766 7.57090 7.65606 7.76768 8.01001 8.19994 9.14999 9.78593 10.46264 11.36758 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.003635 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.637837 B = 7701.379484 C = 8524.491263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.088 4.088 3 C 0.096 3.904 4 N -0.471 5.471 5 C 0.088 3.912 6 C -0.138 4.138 7 C -0.081 4.081 8 C 0.557 3.443 9 O -0.532 6.532 10 N -0.597 5.597 11 C 0.106 3.894 12 C -0.129 4.129 13 C 0.169 3.831 14 H 0.020 0.980 15 C -0.124 4.124 16 H 0.080 0.920 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.595 5.595 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.126 3.874 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.142 0.858 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.252 0.748 44 H 0.091 0.909 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 11.785 -13.581 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.062 4.062 4 N -0.179 5.179 5 C -0.069 4.069 6 C -0.158 4.158 7 C -0.092 4.092 8 C 0.344 3.656 9 O -0.409 6.409 10 N -0.329 5.329 11 C -0.017 4.017 12 C -0.168 4.168 13 C 0.060 3.940 14 H 0.037 0.963 15 C -0.144 4.144 16 H 0.098 0.902 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.319 5.319 20 C -0.356 4.356 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.004 3.996 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.844 12.332 -13.725 18.847 hybrid contribution 0.002 -0.767 1.099 1.340 sum 3.846 11.565 -12.626 17.549 Atomic orbital electron populations 1.20775 0.89340 1.03079 1.03627 1.21032 0.98118 0.92564 0.97395 1.22685 0.89785 0.97240 0.96449 1.67536 1.08249 1.31801 1.10344 1.22707 1.00536 0.87164 0.96448 1.22392 0.93653 1.00430 0.99361 1.20280 0.94115 0.93950 1.00874 1.18267 0.83011 0.83315 0.81005 1.90767 1.28519 1.80876 1.40781 1.48254 1.40083 1.11987 1.32570 1.22097 0.89906 1.01073 0.88644 1.21974 1.02093 0.98448 0.94308 1.20617 0.93440 0.91145 0.88795 0.96269 1.22631 0.99441 0.98186 0.94150 0.90203 1.22721 1.00018 0.94413 1.00326 1.21535 0.93206 0.92674 0.87293 1.44206 1.45854 1.39985 1.01853 1.18985 1.18011 1.16544 0.82012 0.90399 1.24791 0.99046 0.98513 0.97979 1.69941 1.31299 1.25318 1.30255 0.86157 0.78175 0.77083 0.84569 1.21633 1.21665 1.20700 1.21703 0.97994 0.81462 0.98400 0.89894 0.90880 0.91085 0.82195 0.82145 0.84015 0.91356 0.90086 0.91377 0.90405 0.92000 0.92294 0.92694 0.94318 0.93724 0.89022 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 8.95 36.01 0.32 -0.82 16 2 C -0.09 -0.99 5.93 -104.06 -0.62 -1.61 16 3 C 0.10 0.97 10.84 -17.59 -0.19 0.78 16 4 N -0.47 -5.17 10.33 -13.31 -0.14 -5.31 16 5 C 0.09 0.83 11.17 -17.60 -0.20 0.63 16 6 C -0.14 -1.37 7.70 -39.02 -0.30 -1.67 16 7 C -0.08 -0.98 4.80 -104.65 -0.50 -1.49 16 8 C 0.56 7.95 6.49 -12.19 -0.08 7.87 16 9 O -0.53 -8.95 15.13 5.36 0.08 -8.87 16 10 N -0.60 -8.25 2.99 -173.22 -0.52 -8.77 16 11 C 0.11 1.34 5.02 -3.27 -0.02 1.32 16 12 C -0.13 -2.11 5.50 -26.76 -0.15 -2.25 16 13 C 0.17 3.23 2.57 -67.99 -0.17 3.05 16 14 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 15 C -0.12 -2.12 2.85 -89.37 -0.26 -2.38 16 16 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 17 C -0.14 -2.44 6.54 -25.13 -0.16 -2.60 16 18 C 0.18 4.17 5.45 -1.92 -0.01 4.15 16 19 N -0.59 -14.46 3.35 -163.10 -0.55 -15.00 16 20 C -0.23 -6.06 9.88 -15.06 -0.15 -6.21 16 21 H 0.08 1.99 7.21 -52.48 -0.38 1.61 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -26.54 10.44 55.49 0.58 -25.96 16 24 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.13 1.83 5.97 -3.76 -0.02 1.81 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.89 7.11 -51.93 -0.37 0.52 16 31 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.16 7.22 -52.48 -0.38 0.78 16 35 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.08 0.92 5.22 -51.93 -0.27 0.65 16 37 H 0.07 1.20 8.13 -51.92 -0.42 0.78 16 38 H 0.08 1.28 7.62 -51.93 -0.40 0.89 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 42 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.09 1.36 6.98 -51.92 -0.36 1.00 16 45 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -31.64 351.83 -9.56 -41.20 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.69 Total: 0.50 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.60 Total: 0.30 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.62 Total: -55.04 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.64 -9.56 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036709041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.650 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds