Wall clock time and date at job start Tue Mar 31 2020 11:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38179 * 120.49814 * 2 1 4 4 N 1.31794 * 120.88884 * 180.02562 * 3 2 1 5 5 C 1.31822 * 122.05573 * 359.97438 * 4 3 2 6 6 C 1.38127 * 120.89440 * 359.97438 * 5 4 3 7 7 C 1.39790 * 120.49950 * 179.72523 * 2 1 3 8 8 C 1.48156 * 120.92247 * 359.97196 * 7 2 1 9 9 O 1.21509 * 119.99831 * 46.87650 * 8 7 2 10 10 N 1.34771 * 119.99693 * 226.87100 * 8 7 2 11 11 C 1.46598 * 119.69050 * 5.46312 * 10 8 7 12 12 C 1.54374 * 110.35293 * 132.09378 * 11 10 8 13 13 C 1.51521 * 107.26339 * 51.31860 * 12 11 10 14 14 H 1.09003 * 108.81277 * 53.30047 * 13 12 11 15 15 C 1.55356 * 107.78507 * 295.00088 * 13 12 11 16 16 H 1.09008 * 112.27196 * 309.15474 * 15 13 12 17 17 C 1.53743 * 100.22432 * 190.94002 * 15 13 12 18 18 C 1.55285 * 101.84425 * 39.08912 * 17 15 13 19 19 N 1.45464 * 117.34176 * 177.95853 * 13 12 11 20 20 C 1.36937 * 126.40719 * 329.35883 * 19 13 12 21 21 H 1.08008 * 119.99799 * 359.96908 * 20 19 13 22 22 C 1.38807 * 120.00516 * 179.97438 * 20 19 13 23 23 N 1.31630 * 119.99882 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00502 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47516 * 89.99344 * 24 22 20 26 26 H 1.48503 * 109.47103 * 209.99845 * 24 22 20 27 27 H 1.48504 * 109.46554 * 329.99409 * 24 22 20 28 28 C 1.47725 * 119.68529 * 185.73373 * 10 8 7 29 29 H 1.09005 * 109.47295 * 95.38972 * 1 2 3 30 30 H 1.08998 * 109.47080 * 215.39261 * 1 2 3 31 31 H 1.09006 * 109.47083 * 335.39086 * 1 2 3 32 32 H 1.07997 * 119.55270 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.55169 * 180.02562 * 5 4 3 34 34 H 1.08008 * 120.49683 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.25740 * 252.46494 * 11 10 8 36 36 H 1.09005 * 109.24970 * 11.89795 * 11 10 8 37 37 H 1.09008 * 110.04242 * 291.81727 * 12 11 10 38 38 H 1.08998 * 109.80385 * 170.68927 * 12 11 10 39 39 H 1.09000 * 110.95266 * 157.22767 * 17 15 13 40 40 H 1.09002 * 110.94926 * 280.94745 * 17 15 13 41 41 H 1.08999 * 109.92516 * 96.86666 * 18 17 15 42 42 H 1.09001 * 109.91762 * 218.17697 * 18 17 15 43 43 H 0.96998 * 119.99986 * 180.02562 * 23 22 20 44 44 H 1.09008 * 110.06459 * 351.26765 * 28 10 8 45 45 H 1.09000 * 110.07093 * 112.84719 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2334 0.0872 -0.0005 6 6 3.6137 -1.1473 0.0005 7 6 2.2165 -1.2045 0.0058 8 6 1.5078 -2.5055 0.0126 9 8 0.5851 -2.6988 -0.7541 10 7 1.8865 -3.4746 0.8692 11 6 2.9188 -3.1948 1.8718 12 6 2.4633 -3.6853 3.2628 13 6 2.0214 -5.1264 3.1090 14 1 2.8240 -5.6915 2.6348 15 6 0.7710 -5.1435 2.1872 16 1 0.0064 -4.4391 2.5149 17 6 0.3101 -6.5976 2.3794 18 6 0.5677 -6.8158 3.8951 19 7 1.5874 -5.8240 4.3094 20 6 2.0371 -5.6049 5.5841 21 1 2.7881 -4.8511 5.7698 22 6 1.5280 -6.3515 6.6378 23 7 0.6125 -7.2698 6.4116 24 14 2.1409 -6.0521 8.3768 25 1 1.2973 -5.0179 9.0279 26 1 2.0631 -7.3155 9.1534 27 1 3.5498 -5.5849 8.3313 28 6 1.2618 -4.8106 0.7850 29 1 -0.3634 -0.0965 -1.0232 30 1 -0.3633 -0.8377 0.5952 31 1 -0.3633 0.9344 0.4280 32 1 1.6691 2.1264 -0.0004 33 1 5.3120 0.1417 -0.0005 34 1 4.1995 -2.0547 0.0009 35 1 3.8403 -3.7049 1.5911 36 1 3.1007 -2.1207 1.9102 37 1 1.6308 -3.0783 3.6188 38 1 3.2941 -3.6253 3.9659 39 1 -0.7489 -6.7051 2.1446 40 1 0.9122 -7.2799 1.7794 41 1 -0.3538 -6.6571 4.4552 42 1 0.9406 -7.8256 4.0668 43 1 0.2565 -7.7913 7.1479 44 1 0.4221 -4.7877 0.0903 45 1 1.9968 -5.5475 0.4612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036709041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:57 Heat of formation + Delta-G solvation = 15.321417 kcal Electronic energy + Delta-G solvation = -26947.803793 eV Core-core repulsion = 23351.152689 eV Total energy + Delta-G solvation = -3596.651104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.08403 -40.78134 -39.53380 -36.93306 -34.76092 -34.44323 -33.19851 -33.05235 -31.27447 -29.71534 -28.38043 -26.84416 -26.05227 -24.38336 -23.90987 -23.15552 -21.89980 -21.38701 -20.53914 -18.92373 -18.14999 -17.81345 -17.24007 -17.00880 -16.45511 -16.08007 -16.01804 -15.83528 -15.66471 -15.19550 -14.95894 -14.68563 -14.35875 -14.25241 -14.16238 -13.91510 -13.69055 -13.38837 -13.29379 -13.12353 -13.09816 -12.69064 -12.60069 -12.46771 -12.17315 -12.01426 -11.81445 -11.62990 -11.54589 -11.35861 -11.05183 -10.71536 -10.71024 -10.39695 -9.93933 -9.78785 -8.87634 -7.83523 -5.18004 -0.21386 0.08032 1.46181 1.47400 1.51420 1.55780 1.83670 2.50378 2.75273 3.19102 3.35449 3.46902 3.51464 3.75937 3.78738 3.80891 3.86712 3.96752 3.98038 4.15956 4.18537 4.35380 4.42023 4.45988 4.52855 4.63131 4.66812 4.68719 4.74562 4.77818 4.78505 4.84627 4.88010 5.00050 5.06864 5.09999 5.17536 5.21631 5.41469 5.51359 5.52384 5.63076 5.65823 5.76410 6.20496 6.21987 6.91746 6.92647 7.09370 7.79690 8.48094 9.28326 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.003635 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.637837 B = 7701.379484 C = 8524.491263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C 0.096 3.904 4 N -0.488 5.488 5 C 0.090 3.910 6 C -0.134 4.134 7 C -0.102 4.102 8 C 0.559 3.441 9 O -0.563 6.563 10 N -0.598 5.598 11 C 0.116 3.884 12 C -0.123 4.123 13 C 0.159 3.841 14 H 0.029 0.971 15 C -0.109 4.109 16 H 0.058 0.942 17 C -0.121 4.121 18 C 0.182 3.818 19 N -0.616 5.616 20 C -0.230 4.230 21 H 0.088 0.912 22 C -0.069 4.069 23 N -0.954 5.954 24 Si 0.973 3.027 25 H -0.290 1.290 26 H -0.298 1.298 27 H -0.265 1.265 28 C 0.134 3.866 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.184 0.816 33 H 0.192 0.808 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.015 0.985 42 H 0.005 0.995 43 H 0.244 0.756 44 H 0.090 0.910 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.139 13.646 -14.927 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C -0.061 4.061 4 N -0.196 5.196 5 C -0.066 4.066 6 C -0.154 4.154 7 C -0.113 4.113 8 C 0.347 3.653 9 O -0.443 6.443 10 N -0.329 5.329 11 C -0.006 4.006 12 C -0.163 4.163 13 C 0.052 3.948 14 H 0.046 0.954 15 C -0.130 4.130 16 H 0.077 0.923 17 C -0.160 4.160 18 C 0.057 3.943 19 N -0.341 5.341 20 C -0.359 4.359 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.604 5.604 24 Si 0.802 3.198 25 H -0.217 1.217 26 H -0.225 1.225 27 H -0.190 1.190 28 C 0.013 3.987 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.201 0.799 33 H 0.209 0.791 34 H 0.180 0.820 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.033 0.967 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.108 0.892 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.105 14.229 -15.096 21.624 hybrid contribution -0.679 -1.309 1.489 2.096 sum 5.426 12.919 -13.607 19.532 Atomic orbital electron populations 1.20734 0.89263 1.03327 1.03085 1.21183 0.98399 0.92869 0.97933 1.23034 0.89769 0.97728 0.95557 1.67613 1.08608 1.32645 1.10772 1.23235 1.01932 0.86496 0.94952 1.22607 0.92652 1.01610 0.98485 1.20270 0.95229 0.92956 1.02808 1.18592 0.82490 0.83859 0.80343 1.90748 1.29955 1.81477 1.42094 1.48277 1.40219 1.11677 1.32765 1.22117 0.90158 1.02422 0.85928 1.21894 1.01328 0.96133 0.96902 1.20865 0.94353 0.92475 0.87128 0.95395 1.22451 0.97932 0.96976 0.95613 0.92314 1.22587 1.01546 0.95561 0.96278 1.21299 0.91248 0.91082 0.90658 1.44500 1.46001 1.40837 1.02733 1.19407 1.17402 1.15796 0.83253 0.89455 1.25612 0.99875 0.98949 1.01758 1.70169 1.32945 1.26605 1.30648 0.85150 0.78324 0.76346 0.79995 1.21691 1.22471 1.18986 1.21581 0.98642 0.82481 0.96026 0.90322 0.93336 0.88606 0.79866 0.79108 0.81958 0.88532 0.88315 0.93356 0.90424 0.90537 0.89998 0.96697 0.97655 0.94635 0.89202 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 8.95 71.24 0.64 -1.47 16 2 C -0.10 -2.09 5.93 -19.50 -0.12 -2.21 16 3 C 0.10 1.71 10.84 84.68 0.92 2.63 16 4 N -0.49 -9.24 10.33 -196.01 -2.03 -11.26 16 5 C 0.09 1.37 11.17 84.67 0.95 2.31 16 6 C -0.13 -2.19 7.70 22.63 0.17 -2.01 16 7 C -0.10 -2.25 4.80 -19.88 -0.10 -2.34 16 8 C 0.56 15.05 6.49 86.88 0.56 15.61 16 9 O -0.56 -18.55 15.13 -3.75 -0.06 -18.61 16 10 N -0.60 -15.19 2.99 -820.23 -2.46 -17.65 16 11 C 0.12 2.58 5.02 86.83 0.44 3.02 16 12 C -0.12 -3.84 5.50 30.58 0.17 -3.68 16 13 C 0.16 5.93 2.57 45.51 0.12 6.05 16 14 H 0.03 1.04 7.92 -2.39 -0.02 1.02 16 15 C -0.11 -3.67 2.85 -9.99 -0.03 -3.70 16 16 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 17 C -0.12 -4.30 6.54 31.63 0.21 -4.09 16 18 C 0.18 8.89 5.45 86.84 0.47 9.36 16 19 N -0.62 -30.44 3.35 -669.92 -2.24 -32.69 16 20 C -0.23 -12.38 9.88 84.03 0.83 -11.55 16 21 H 0.09 4.42 7.21 -2.91 -0.02 4.40 16 22 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 23 N -0.95 -57.37 10.44 21.65 0.23 -57.14 16 24 Si 0.97 45.20 29.55 68.60 2.03 47.22 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 26 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 C 0.13 3.63 5.97 85.89 0.51 4.14 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.05 1.19 7.11 -2.39 -0.02 1.17 16 31 H 0.10 1.33 8.06 -2.38 -0.02 1.31 16 32 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.16 1.92 7.22 -2.91 -0.02 1.90 16 35 H 0.10 1.69 8.08 -2.39 -0.02 1.67 16 36 H 0.10 1.91 5.22 -2.38 -0.01 1.90 16 37 H 0.05 1.68 8.13 -2.38 -0.02 1.66 16 38 H 0.08 2.42 7.62 -2.39 -0.02 2.40 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.08 2.55 8.12 -2.39 -0.02 2.53 16 41 H 0.01 0.83 7.21 -2.39 -0.02 0.81 16 42 H 0.01 0.28 7.77 -2.39 -0.02 0.27 16 43 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.09 2.52 6.98 -2.38 -0.02 2.51 16 45 H 0.09 2.17 8.08 -2.39 -0.02 2.15 16 Total: -1.00 -71.64 351.83 2.67 -68.97 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.99 Total: 12.53 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 6.21 Total: 8.63 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -6.50 Total: -118.74 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.06 Total: -18.61 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.64 2.67 -68.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036709041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.290 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds