Wall clock time and date at job start Tue Mar 31 2020 11:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31702 * 119.71647 * 2 1 4 4 C 1.31922 * 121.87570 * 180.24531 * 3 2 1 5 5 C 1.38356 * 121.08361 * 359.76810 * 4 3 2 6 6 C 1.38353 * 119.30068 * 359.97438 * 5 4 3 7 7 C 1.39522 * 119.71597 * 179.74744 * 2 1 3 8 8 C 1.47834 * 120.56092 * 0.02595 * 7 2 1 9 9 O 1.21555 * 119.99728 * 52.09392 * 8 7 2 10 10 N 1.34773 * 120.00232 * 232.10237 * 8 7 2 11 11 C 1.46596 * 119.68048 * 355.78145 * 10 8 7 12 12 C 1.53961 * 110.57429 * 132.20430 * 11 10 8 13 13 C 1.51520 * 107.34707 * 51.04913 * 12 11 10 14 14 H 1.09003 * 108.80312 * 53.44644 * 13 12 11 15 15 C 1.55089 * 107.77057 * 295.30106 * 13 12 11 16 16 H 1.08995 * 111.33501 * 308.99786 * 15 13 12 17 17 C 1.53742 * 100.32157 * 191.11471 * 15 13 12 18 18 C 1.55289 * 101.84434 * 38.94636 * 17 15 13 19 19 N 1.45466 * 117.34826 * 178.09252 * 13 12 11 20 20 C 1.36936 * 126.40714 * 329.42042 * 19 13 12 21 21 H 1.08006 * 119.99977 * 17.44334 * 20 19 13 22 22 C 1.38809 * 120.00437 * 197.44699 * 20 19 13 23 23 N 1.31621 * 120.00561 * 185.69956 * 22 20 19 24 24 Si 1.86806 * 119.99744 * 5.70002 * 22 20 19 25 25 H 1.48490 * 109.47339 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47164 * 59.99655 * 24 22 20 27 27 H 1.48503 * 109.47073 * 300.00176 * 24 22 20 28 28 C 1.47797 * 119.83711 * 176.13876 * 10 8 7 29 29 H 1.09004 * 109.47308 * 264.55507 * 1 2 3 30 30 H 1.09003 * 109.46986 * 24.55022 * 1 2 3 31 31 H 1.09002 * 109.47090 * 144.55454 * 1 2 3 32 32 H 1.08004 * 119.45633 * 179.74653 * 4 3 2 33 33 H 1.08000 * 120.34725 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.85555 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.25726 * 11.92265 * 11 10 8 36 36 H 1.08998 * 109.22638 * 252.46447 * 11 10 8 37 37 H 1.09002 * 109.87860 * 291.59383 * 12 11 10 38 38 H 1.08998 * 109.88345 * 170.51750 * 12 11 10 39 39 H 1.09001 * 110.95316 * 280.81106 * 17 15 13 40 40 H 1.09004 * 110.95835 * 157.08580 * 17 15 13 41 41 H 1.08991 * 109.92488 * 218.17538 * 18 17 15 42 42 H 1.09007 * 110.08586 * 96.95888 * 18 17 15 43 43 H 0.96995 * 119.99404 * 354.85819 * 23 22 20 44 44 H 1.09002 * 110.64554 * 112.72760 * 28 10 8 45 45 H 1.09009 * 109.72964 * 351.00172 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1438 0.0000 4 6 3.4781 1.1935 -0.0048 5 6 4.2366 0.0364 -0.0053 6 6 3.5987 -1.1913 -0.0001 7 6 2.1986 -1.2117 0.0053 8 6 1.4656 -2.4956 0.0104 9 8 0.6030 -2.7061 -0.8197 10 7 1.7537 -3.4324 0.9355 11 6 2.8571 -3.2100 1.8747 12 6 2.4119 -3.5198 3.3156 13 6 1.7771 -4.8955 3.3064 14 1 2.4747 -5.6013 2.8553 15 6 0.4970 -4.8203 2.4341 16 1 -0.1416 -3.9909 2.7377 17 6 -0.1472 -6.1746 2.7729 18 6 0.1501 -6.2977 4.2921 19 7 1.3133 -5.4260 4.5789 20 6 1.8480 -5.1640 5.8121 21 1 2.4966 -4.3114 5.9494 22 6 1.5564 -5.9942 6.8857 23 7 1.9774 -5.6814 8.0929 24 14 0.5666 -7.5555 6.6171 25 1 0.3925 -8.2603 7.9125 26 1 1.2853 -8.4396 5.6647 27 1 -0.7655 -7.2075 6.0606 28 6 0.9615 -4.6789 0.9912 29 1 -0.3634 -0.0975 1.0231 30 1 -0.3633 0.9348 -0.4270 31 1 -0.3633 -0.8372 -0.5960 32 1 3.9734 2.1533 -0.0088 33 1 5.3152 0.0909 -0.0096 34 1 4.1660 -2.1103 -0.0008 35 1 3.1774 -2.1699 1.8132 36 1 3.6912 -3.8593 1.6088 37 1 1.6847 -2.7782 3.6463 38 1 3.2761 -3.5146 3.9798 39 1 0.3278 -6.9823 2.2161 40 1 -1.2209 -6.1532 2.5862 41 1 0.3903 -7.3313 4.5410 42 1 -0.7130 -5.9675 4.8704 43 1 2.5536 -4.9118 8.2212 44 1 1.5732 -5.5359 0.7093 45 1 0.1007 -4.5978 0.3273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036807737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:06 Heat of formation + Delta-G solvation = 22.852862 kcal Electronic energy + Delta-G solvation = -27093.233340 eV Core-core repulsion = 23496.908824 eV Total energy + Delta-G solvation = -3596.324516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15123 -40.90025 -39.63019 -37.10215 -34.90924 -34.05044 -33.65869 -33.12436 -31.90041 -29.87970 -28.77805 -26.88189 -25.66311 -24.59602 -23.99370 -23.18310 -22.23552 -21.43016 -20.58742 -19.37646 -18.29535 -17.84889 -17.32274 -17.28789 -16.90057 -16.65698 -16.05909 -15.73522 -15.55315 -15.37864 -14.91131 -14.74012 -14.70074 -14.39064 -14.26818 -14.00179 -13.75060 -13.48504 -13.38259 -13.17646 -13.09624 -12.95251 -12.68803 -12.45655 -12.26034 -12.24546 -11.60492 -11.38212 -11.25321 -11.22600 -10.97483 -10.79451 -10.66691 -10.47916 -10.00399 -9.82127 -9.09661 -8.55239 -5.49457 -0.26572 0.15596 1.41419 1.44852 1.50294 1.71585 1.82543 2.55953 2.67716 3.09098 3.18890 3.24911 3.35977 3.63336 3.64268 3.74611 3.84116 3.88106 4.00590 4.01510 4.08427 4.27734 4.33457 4.39358 4.46582 4.53872 4.55811 4.56820 4.60414 4.66141 4.74565 4.76410 4.80733 4.86176 4.95566 5.00974 5.05150 5.08097 5.09889 5.27354 5.38238 5.46898 5.60501 5.63241 6.12796 6.18057 6.83162 6.87073 6.92944 7.49288 8.15677 8.92029 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.003711 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.289883 B = 7544.052766 C = 8204.327874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.158 3.842 3 N -0.510 5.510 4 C 0.115 3.885 5 C -0.172 4.172 6 C -0.045 4.045 7 C -0.199 4.199 8 C 0.569 3.431 9 O -0.563 6.563 10 N -0.598 5.598 11 C 0.116 3.884 12 C -0.122 4.122 13 C 0.155 3.845 14 H 0.034 0.966 15 C -0.111 4.111 16 H 0.066 0.934 17 C -0.106 4.106 18 C 0.091 3.909 19 N -0.626 5.626 20 C -0.298 4.298 21 H 0.049 0.951 22 C -0.084 4.084 23 N -0.972 5.972 24 Si 1.113 2.887 25 H -0.318 1.318 26 H -0.281 1.281 27 H -0.251 1.251 28 C 0.134 3.866 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.192 0.808 33 H 0.180 0.820 34 H 0.162 0.838 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.031 0.969 42 H 0.035 0.965 43 H 0.245 0.755 44 H 0.095 0.905 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 8.378 -20.943 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.020 3.980 3 N -0.220 5.220 4 C -0.042 4.042 5 C -0.191 4.191 6 C -0.071 4.071 7 C -0.204 4.204 8 C 0.357 3.643 9 O -0.443 6.443 10 N -0.329 5.329 11 C -0.007 4.007 12 C -0.162 4.162 13 C 0.048 3.952 14 H 0.051 0.949 15 C -0.132 4.132 16 H 0.085 0.915 17 C -0.144 4.144 18 C -0.032 4.032 19 N -0.353 5.353 20 C -0.426 4.426 21 H 0.066 0.934 22 C -0.276 4.276 23 N -0.617 5.617 24 Si 0.941 3.059 25 H -0.247 1.247 26 H -0.209 1.209 27 H -0.176 1.176 28 C 0.013 3.987 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.208 0.792 33 H 0.198 0.802 34 H 0.180 0.820 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.768 7.785 -20.518 22.016 hybrid contribution 1.427 0.806 0.258 1.659 sum 3.195 8.591 -20.260 22.237 Atomic orbital electron populations 1.20928 0.88515 1.04726 1.03371 1.21438 0.97547 0.87170 0.91853 1.67635 1.11716 1.28327 1.14352 1.23609 0.88616 1.00825 0.91162 1.22499 1.03636 0.91758 1.01199 1.22100 0.91763 1.00924 0.92284 1.20706 0.96029 0.93953 1.09723 1.18343 0.82063 0.83276 0.80624 1.90721 1.34408 1.79913 1.39230 1.48284 1.34005 1.18528 1.32123 1.22022 0.88487 1.03449 0.86758 1.21763 1.00602 0.97244 0.96561 1.20860 0.94666 0.93774 0.85908 0.94876 1.22491 0.97142 0.98327 0.95224 0.91523 1.22420 1.02272 0.96742 0.93005 1.22631 0.89690 0.93633 0.97270 1.44632 1.32829 1.55485 1.02330 1.20007 1.27492 1.08295 0.86838 0.93359 1.27141 1.03408 1.05116 0.91936 1.71028 1.37850 1.30684 1.22141 0.83374 0.76951 0.72688 0.72849 1.24720 1.20873 1.17627 1.21624 0.96238 0.85591 0.95295 0.90505 0.89456 0.89727 0.79150 0.80244 0.82008 0.88290 0.88736 0.93632 0.91852 0.88721 0.88476 0.95130 0.94654 0.94554 0.88669 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.66 71.24 0.69 -2.12 16 2 C 0.16 3.87 6.82 42.89 0.29 4.16 16 3 N -0.51 -11.56 10.26 -182.84 -1.88 -13.43 16 4 C 0.11 1.76 11.17 84.71 0.95 2.71 16 5 C -0.17 -2.11 10.10 22.33 0.23 -1.88 16 6 C -0.04 -0.72 7.55 22.73 0.17 -0.55 16 7 C -0.20 -4.57 4.86 -19.99 -0.10 -4.67 16 8 C 0.57 14.95 6.68 86.78 0.58 15.53 16 9 O -0.56 -17.74 14.40 -3.89 -0.06 -17.79 16 10 N -0.60 -14.54 2.99 -821.22 -2.46 -17.00 16 11 C 0.12 2.60 5.21 86.69 0.45 3.05 16 12 C -0.12 -3.94 5.40 30.43 0.16 -3.77 16 13 C 0.15 5.53 2.57 45.42 0.12 5.64 16 14 H 0.03 1.17 7.91 -2.39 -0.02 1.15 16 15 C -0.11 -3.28 2.84 -10.08 -0.03 -3.30 16 16 H 0.07 2.20 8.11 -2.39 -0.02 2.18 16 17 C -0.11 -3.00 6.54 31.63 0.21 -2.79 16 18 C 0.09 3.66 4.66 86.85 0.40 4.06 16 19 N -0.63 -29.02 3.25 -670.45 -2.18 -31.20 16 20 C -0.30 -16.80 10.23 84.03 0.86 -15.94 16 21 H 0.05 2.93 7.44 -2.91 -0.02 2.91 16 22 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 23 N -0.97 -62.74 13.70 21.65 0.30 -62.44 16 24 Si 1.11 53.66 24.58 68.60 1.69 55.35 16 25 H -0.32 -15.98 7.11 99.48 0.71 -15.28 16 26 H -0.28 -12.64 6.78 99.48 0.67 -11.96 16 27 H -0.25 -10.69 5.29 99.48 0.53 -10.16 16 28 C 0.13 3.21 5.97 85.88 0.51 3.73 16 29 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.22 5.84 -2.39 -0.01 2.20 16 32 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.16 1.86 7.27 -2.91 -0.02 1.84 16 35 H 0.10 1.97 4.76 -2.39 -0.01 1.95 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.63 8.11 -2.39 -0.02 1.61 16 38 H 0.06 2.22 7.73 -2.39 -0.02 2.20 16 39 H 0.09 2.24 8.11 -2.39 -0.02 2.22 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.03 1.27 4.07 -2.39 -0.01 1.26 16 42 H 0.04 1.51 6.58 -2.38 -0.02 1.49 16 43 H 0.25 15.88 8.73 -92.71 -0.81 15.07 16 44 H 0.10 1.94 8.08 -2.39 -0.02 1.92 16 45 H 0.10 2.34 7.01 -2.38 -0.02 2.32 16 Total: -1.00 -76.46 342.57 2.13 -74.33 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.75 Total: 12.85 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 5.96 Total: -0.66 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -6.21 Total: -124.08 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.06 Total: -17.79 kcal Atomic # 14 Polarization: 53.66 SS G_CDS: 1.69 Total: 55.35 kcal Total: -76.46 2.13 -74.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036807737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.183 kcal (2) G-P(sol) polarization free energy of solvation -76.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds