Wall clock time and date at job start Tue Mar 31 2020 11:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38171 * 119.55168 * 2 1 4 4 C 1.39795 * 118.99594 * 180.02562 * 3 2 1 5 5 C 1.48152 * 120.91671 * 179.97438 * 4 3 2 6 6 O 1.21513 * 120.00280 * 32.89206 * 5 4 3 7 7 N 1.34776 * 119.99807 * 212.89887 * 5 4 3 8 8 C 1.47147 * 121.01361 * 5.58711 * 7 5 4 9 9 C 1.53048 * 107.68835 * 122.56264 * 8 7 5 10 10 C 1.51148 * 111.11161 * 54.39671 * 9 8 7 11 11 H 1.08997 * 108.45418 * 185.38892 * 10 9 8 12 12 C 1.53988 * 113.17366 * 304.88711 * 10 9 8 13 13 H 1.08994 * 112.71775 * 284.03180 * 12 10 9 14 14 C 1.56017 * 100.38531 * 163.65959 * 12 10 9 15 15 C 1.54488 * 102.62538 * 323.14496 * 14 12 10 16 16 N 1.46474 * 113.22889 * 65.11173 * 10 9 8 17 17 C 1.36934 * 126.05727 * 29.51472 * 16 10 9 18 18 H 1.07997 * 119.99851 * 5.73919 * 17 16 10 19 19 C 1.38811 * 119.99895 * 185.73898 * 17 16 10 20 20 N 1.31621 * 119.99882 * 351.88828 * 19 17 16 21 21 Si 1.86796 * 119.99930 * 171.88432 * 19 17 16 22 22 H 1.48502 * 109.47226 * 94.98336 * 21 19 17 23 23 H 1.48496 * 109.47233 * 214.98236 * 21 19 17 24 24 H 1.48503 * 109.47521 * 334.98320 * 21 19 17 25 25 C 1.46528 * 121.01564 * 185.31100 * 7 5 4 26 26 C 1.39836 * 118.16178 * 0.02562 * 4 3 2 27 27 C 1.38131 * 118.99706 * 0.02562 * 26 4 3 28 28 N 1.31796 * 119.54936 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46685 * 269.97466 * 1 2 3 30 30 H 1.08990 * 109.47154 * 29.97584 * 1 2 3 31 31 H 1.08998 * 109.46636 * 149.97944 * 1 2 3 32 32 H 1.08002 * 120.49933 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.81472 * 242.10602 * 8 7 5 34 34 H 1.08997 * 109.82026 * 2.95382 * 8 7 5 35 35 H 1.08993 * 109.15331 * 174.82217 * 9 8 7 36 36 H 1.08996 * 109.14597 * 294.03617 * 9 8 7 37 37 H 1.09004 * 110.78282 * 204.85827 * 14 12 10 38 38 H 1.09007 * 110.77956 * 81.42702 * 14 12 10 39 39 H 1.09004 * 109.90287 * 263.44506 * 15 14 12 40 40 H 1.09000 * 109.90701 * 142.20883 * 15 14 12 41 41 H 0.97005 * 119.99515 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.34487 * 355.82651 * 25 7 5 43 43 H 1.09001 * 109.34863 * 115.37899 * 25 7 5 44 44 H 1.07993 * 120.49940 * 179.97438 * 26 4 3 45 45 H 1.07997 * 119.54454 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3599 2.4520 -0.0011 6 8 3.9237 3.4317 0.5703 7 7 5.5473 2.5149 -0.6356 8 6 6.0401 1.3828 -1.4361 9 6 6.2889 1.8920 -2.8578 10 6 7.2091 3.0910 -2.8534 11 1 7.2798 3.4755 -3.8709 12 6 6.7089 4.2356 -1.9529 13 1 5.8869 4.7944 -2.4000 14 6 8.0145 5.0791 -1.8189 15 6 9.1124 3.9942 -1.7548 16 7 8.5611 2.7799 -2.3834 17 6 9.1998 1.5749 -2.5064 18 1 8.7401 0.7749 -3.0677 19 6 10.4381 1.3817 -1.9097 20 7 11.0712 2.3982 -1.3635 21 14 11.2060 -0.3209 -1.8819 22 1 12.1336 -0.4645 -3.0327 23 1 11.9576 -0.5043 -0.6145 24 1 10.1373 -1.3476 -1.9766 25 6 6.3842 3.7149 -0.5542 26 6 4.2344 -0.0508 -0.0016 27 6 3.4741 -1.2040 -0.0026 28 7 2.1571 -1.1465 -0.0005 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3632 -0.8898 -0.5142 32 1 1.6494 2.1378 0.0004 33 1 6.9703 1.0064 -1.0104 34 1 5.2935 0.5889 -1.4524 35 1 6.7416 1.0959 -3.4487 36 1 5.3372 2.1743 -3.3080 37 1 8.0008 5.6701 -0.9030 38 1 8.1530 5.7185 -2.6908 39 1 9.3715 3.7893 -0.7160 40 1 9.9950 4.3267 -2.3012 41 1 11.9364 2.2630 -0.9462 42 1 5.8543 4.4875 0.0028 43 1 7.3131 3.4731 -0.0376 44 1 5.3130 -0.1053 -0.0025 45 1 3.9654 -2.1657 -0.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036848699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:14 Heat of formation + Delta-G solvation = 42.395220 kcal Electronic energy + Delta-G solvation = -27242.750033 eV Core-core repulsion = 23647.272938 eV Total energy + Delta-G solvation = -3595.477096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94697 -39.65009 -38.16789 -35.26673 -33.45745 -32.73794 -32.39291 -31.70788 -29.38085 -28.10052 -27.53321 -25.81459 -24.56003 -23.44897 -22.85393 -22.34753 -20.16652 -19.82096 -18.49715 -17.35188 -16.70502 -16.34277 -16.23495 -15.65412 -15.21407 -14.92975 -14.84991 -14.44708 -14.36934 -13.99152 -13.75841 -13.43682 -13.04941 -12.97802 -12.65851 -12.48751 -12.41786 -12.20577 -11.86904 -11.56464 -11.43726 -11.14155 -11.08659 -10.87014 -10.70988 -10.25402 -10.18068 -10.08877 -9.97952 -9.89932 -9.70950 -9.69770 -9.41031 -9.00845 -8.63163 -8.30313 -6.88754 -5.80524 -3.11860 0.70341 0.92170 2.82622 3.10924 3.33296 3.38622 3.41560 3.65472 4.10209 4.36062 4.42090 4.59554 4.82951 4.88716 5.10375 5.12900 5.26521 5.28784 5.29566 5.37224 5.46706 5.50917 5.52921 5.54158 5.68094 5.73775 5.82412 5.85576 5.91241 5.98982 6.06204 6.21208 6.22960 6.28619 6.35188 6.46504 6.48336 6.63291 6.70089 6.82005 6.86233 7.49357 7.55464 7.60729 7.74705 7.77708 8.17229 8.21466 9.12887 9.75518 10.43901 11.31966 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.004347 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.774235 B = 6439.229494 C = 7667.514266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.120 3.880 3 C -0.121 4.121 4 C -0.073 4.073 5 C 0.554 3.446 6 O -0.543 6.543 7 N -0.588 5.588 8 C 0.094 3.906 9 C -0.127 4.127 10 C 0.170 3.830 11 H 0.017 0.983 12 C -0.117 4.117 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.175 3.825 16 N -0.594 5.594 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.003 4.003 20 N -0.916 5.916 21 Si 0.904 3.096 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.126 3.874 26 C -0.153 4.153 27 C 0.100 3.900 28 N -0.475 5.475 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.041 0.959 41 H 0.252 0.748 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.153 0.847 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.602 -2.481 1.071 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.142 4.142 4 C -0.084 4.084 5 C 0.342 3.658 6 O -0.422 6.422 7 N -0.318 5.318 8 C -0.028 4.028 9 C -0.167 4.167 10 C 0.062 3.938 11 H 0.035 0.965 12 C -0.137 4.137 13 H 0.096 0.904 14 C -0.181 4.181 15 C 0.051 3.949 16 N -0.320 5.320 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.200 4.200 20 N -0.563 5.563 21 Si 0.734 3.266 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.005 3.995 26 C -0.173 4.173 27 C -0.057 4.057 28 N -0.185 5.185 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.171 0.829 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.049 -2.815 1.445 16.358 hybrid contribution 1.293 -0.091 -0.101 1.300 sum -14.756 -2.906 1.344 15.100 Atomic orbital electron populations 1.20711 0.88448 1.03578 1.03225 1.21261 0.97198 0.87869 0.95436 1.22032 0.93109 0.99908 0.99146 1.20390 0.94395 0.93980 0.99617 1.18192 0.80871 0.87196 0.79559 1.90745 1.69099 1.36603 1.45775 1.47981 1.18190 1.17479 1.48171 1.22429 1.00597 0.87957 0.91814 1.21586 0.98960 1.00079 0.96030 1.20252 0.86496 0.91768 0.95235 0.96527 1.22660 0.97381 0.97850 0.95819 0.90441 1.23139 0.95828 0.98474 1.00649 1.21255 0.92003 0.83491 0.98196 1.44320 1.09684 1.09433 1.68531 1.18927 1.00359 0.88700 1.27628 0.90359 1.24793 0.97414 0.97314 1.00512 1.69973 1.15184 1.28324 1.42780 0.86238 0.79203 0.83992 0.77168 1.21737 1.21700 1.20583 1.21513 0.94461 0.86176 0.97379 1.22716 1.02617 0.92422 0.99553 1.22753 0.89063 0.98481 0.95390 1.67384 1.10359 1.29399 1.11391 0.90298 0.90565 0.90334 0.83988 0.88680 0.89502 0.90443 0.92822 0.91943 0.92269 0.93344 0.94103 0.93734 0.90117 0.89985 0.82910 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.17 36.01 0.37 -0.45 16 2 C 0.12 1.38 6.78 -82.63 -0.56 0.82 16 3 C -0.12 -1.52 9.34 -39.02 -0.36 -1.88 16 4 C -0.07 -1.01 5.43 -104.65 -0.57 -1.58 16 5 C 0.55 9.16 7.47 -12.19 -0.09 9.07 16 6 O -0.54 -10.39 16.29 5.35 0.09 -10.30 16 7 N -0.59 -9.67 2.94 -174.28 -0.51 -10.18 16 8 C 0.09 1.46 4.82 -3.66 -0.02 1.44 16 9 C -0.13 -2.10 5.20 -27.64 -0.14 -2.24 16 10 C 0.17 3.23 2.85 -68.36 -0.19 3.04 16 11 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 12 C -0.12 -2.00 3.84 -88.63 -0.34 -2.34 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.14 -2.53 6.28 -24.34 -0.15 -2.68 16 15 C 0.18 3.96 4.65 -2.75 -0.01 3.94 16 16 N -0.59 -13.60 3.12 -164.50 -0.51 -14.11 16 17 C -0.23 -5.70 8.96 -15.06 -0.13 -5.83 16 18 H 0.08 1.88 6.78 -52.49 -0.36 1.52 16 19 C 0.00 -0.09 5.48 -17.43 -0.10 -0.19 16 20 N -0.92 -25.43 10.44 55.49 0.58 -24.86 16 21 Si 0.90 20.74 29.56 -169.99 -5.03 15.72 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.13 2.20 5.44 -4.16 -0.02 2.18 16 26 C -0.15 -1.87 7.50 -39.02 -0.29 -2.16 16 27 C 0.10 1.12 11.17 -17.59 -0.20 0.93 16 28 N -0.47 -5.85 10.25 -9.52 -0.10 -5.95 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.14 1.64 8.03 -52.49 -0.42 1.22 16 33 H 0.10 1.70 7.48 -51.93 -0.39 1.31 16 34 H 0.09 1.15 4.10 -51.93 -0.21 0.94 16 35 H 0.08 1.30 7.03 -51.93 -0.37 0.94 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.01 7.97 -51.93 -0.41 0.60 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.21 6.91 -51.93 -0.36 0.85 16 40 H 0.04 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.08 1.40 6.99 -51.93 -0.36 1.03 16 43 H 0.08 1.59 6.79 -51.93 -0.35 1.24 16 44 H 0.15 1.78 5.90 -52.49 -0.31 1.47 16 45 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -30.11 348.27 -9.51 -39.62 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.45 Total: 2.75 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.82 Total: 2.05 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.54 Total: -55.09 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.11 -9.51 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036848699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.016 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds