Wall clock time and date at job start Tue Mar 31 2020 11:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38171 * 119.55168 * 2 1 4 4 C 1.39795 * 118.99594 * 180.02562 * 3 2 1 5 5 C 1.48152 * 120.91671 * 179.97438 * 4 3 2 6 6 O 1.21513 * 120.00280 * 32.89206 * 5 4 3 7 7 N 1.34776 * 119.99807 * 212.89887 * 5 4 3 8 8 C 1.47147 * 121.01361 * 5.58711 * 7 5 4 9 9 C 1.53048 * 107.68835 * 122.56264 * 8 7 5 10 10 C 1.51148 * 111.11161 * 54.39671 * 9 8 7 11 11 H 1.08997 * 108.45418 * 185.38892 * 10 9 8 12 12 C 1.53988 * 113.17366 * 304.88711 * 10 9 8 13 13 H 1.08994 * 112.71775 * 284.03180 * 12 10 9 14 14 C 1.56017 * 100.38531 * 163.65959 * 12 10 9 15 15 C 1.54488 * 102.62538 * 323.14496 * 14 12 10 16 16 N 1.46474 * 113.22889 * 65.11173 * 10 9 8 17 17 C 1.36934 * 126.05727 * 29.51472 * 16 10 9 18 18 H 1.07997 * 119.99851 * 5.73919 * 17 16 10 19 19 C 1.38811 * 119.99895 * 185.73898 * 17 16 10 20 20 N 1.31621 * 119.99882 * 351.88828 * 19 17 16 21 21 Si 1.86796 * 119.99930 * 171.88432 * 19 17 16 22 22 H 1.48502 * 109.47226 * 94.98336 * 21 19 17 23 23 H 1.48496 * 109.47233 * 214.98236 * 21 19 17 24 24 H 1.48503 * 109.47521 * 334.98320 * 21 19 17 25 25 C 1.46528 * 121.01564 * 185.31100 * 7 5 4 26 26 C 1.39836 * 118.16178 * 0.02562 * 4 3 2 27 27 C 1.38131 * 118.99706 * 0.02562 * 26 4 3 28 28 N 1.31796 * 119.54936 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46685 * 269.97466 * 1 2 3 30 30 H 1.08990 * 109.47154 * 29.97584 * 1 2 3 31 31 H 1.08998 * 109.46636 * 149.97944 * 1 2 3 32 32 H 1.08002 * 120.49933 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.81472 * 242.10602 * 8 7 5 34 34 H 1.08997 * 109.82026 * 2.95382 * 8 7 5 35 35 H 1.08993 * 109.15331 * 174.82217 * 9 8 7 36 36 H 1.08996 * 109.14597 * 294.03617 * 9 8 7 37 37 H 1.09004 * 110.78282 * 204.85827 * 14 12 10 38 38 H 1.09007 * 110.77956 * 81.42702 * 14 12 10 39 39 H 1.09004 * 109.90287 * 263.44506 * 15 14 12 40 40 H 1.09000 * 109.90701 * 142.20883 * 15 14 12 41 41 H 0.97005 * 119.99515 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.34487 * 355.82651 * 25 7 5 43 43 H 1.09001 * 109.34863 * 115.37899 * 25 7 5 44 44 H 1.07993 * 120.49940 * 179.97438 * 26 4 3 45 45 H 1.07997 * 119.54454 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3599 2.4520 -0.0011 6 8 3.9237 3.4317 0.5703 7 7 5.5473 2.5149 -0.6356 8 6 6.0401 1.3828 -1.4361 9 6 6.2889 1.8920 -2.8578 10 6 7.2091 3.0910 -2.8534 11 1 7.2798 3.4755 -3.8709 12 6 6.7089 4.2356 -1.9529 13 1 5.8869 4.7944 -2.4000 14 6 8.0145 5.0791 -1.8189 15 6 9.1124 3.9942 -1.7548 16 7 8.5611 2.7799 -2.3834 17 6 9.1998 1.5749 -2.5064 18 1 8.7401 0.7749 -3.0677 19 6 10.4381 1.3817 -1.9097 20 7 11.0712 2.3982 -1.3635 21 14 11.2060 -0.3209 -1.8819 22 1 12.1336 -0.4645 -3.0327 23 1 11.9576 -0.5043 -0.6145 24 1 10.1373 -1.3476 -1.9766 25 6 6.3842 3.7149 -0.5542 26 6 4.2344 -0.0508 -0.0016 27 6 3.4741 -1.2040 -0.0026 28 7 2.1571 -1.1465 -0.0005 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3632 -0.8898 -0.5142 32 1 1.6494 2.1378 0.0004 33 1 6.9703 1.0064 -1.0104 34 1 5.2935 0.5889 -1.4524 35 1 6.7416 1.0959 -3.4487 36 1 5.3372 2.1743 -3.3080 37 1 8.0008 5.6701 -0.9030 38 1 8.1530 5.7185 -2.6908 39 1 9.3715 3.7893 -0.7160 40 1 9.9950 4.3267 -2.3012 41 1 11.9364 2.2630 -0.9462 42 1 5.8543 4.4875 0.0028 43 1 7.3131 3.4731 -0.0376 44 1 5.3130 -0.1053 -0.0025 45 1 3.9654 -2.1657 -0.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036848699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:13 Heat of formation + Delta-G solvation = 24.965760 kcal Electronic energy + Delta-G solvation = -27243.505832 eV Core-core repulsion = 23647.272938 eV Total energy + Delta-G solvation = -3596.232894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09153 -40.86319 -39.58239 -36.71057 -34.86587 -33.96378 -33.41778 -33.22273 -31.08107 -29.37792 -28.58472 -27.22353 -26.20219 -24.62623 -24.16369 -23.46363 -21.84521 -21.12071 -19.92699 -18.61464 -18.23442 -17.66057 -17.29011 -17.01014 -16.56552 -16.30041 -16.17157 -15.75456 -15.66760 -15.35985 -15.04336 -14.50265 -14.45598 -14.30461 -13.96798 -13.87345 -13.37343 -13.19183 -13.09838 -13.03790 -12.84819 -12.74480 -12.64916 -12.45067 -12.25038 -11.99257 -11.68350 -11.56785 -11.52759 -11.34793 -11.24223 -10.89475 -10.59383 -10.45103 -9.91023 -9.70084 -8.79764 -7.79726 -5.11233 -0.31445 0.03287 1.49664 1.50704 1.59013 1.60989 1.84783 2.53901 2.70821 3.19926 3.33118 3.39783 3.57386 3.74176 3.78788 3.87627 3.90992 3.99319 4.04522 4.18397 4.22461 4.37142 4.43719 4.52692 4.55307 4.59729 4.70774 4.74511 4.78003 4.81219 4.84659 4.92943 4.96245 5.00402 5.08650 5.18735 5.21626 5.23485 5.36169 5.45559 5.58964 5.62235 5.68982 5.80848 6.24696 6.31154 6.89409 6.91515 7.15293 7.85050 8.52749 9.32464 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.004347 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.774235 B = 6439.229494 C = 7667.514266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.121 3.879 3 C -0.127 4.127 4 C -0.089 4.089 5 C 0.556 3.444 6 O -0.573 6.573 7 N -0.589 5.589 8 C 0.102 3.898 9 C -0.124 4.124 10 C 0.163 3.837 11 H 0.015 0.985 12 C -0.103 4.103 13 H 0.103 0.897 14 C -0.129 4.129 15 C 0.184 3.816 16 N -0.607 5.607 17 C -0.220 4.220 18 H 0.091 0.909 19 C -0.064 4.064 20 N -0.951 5.951 21 Si 0.963 3.037 22 H -0.295 1.295 23 H -0.303 1.303 24 H -0.259 1.259 25 C 0.132 3.868 26 C -0.157 4.157 27 C 0.105 3.895 28 N -0.488 5.488 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.015 0.985 40 H 0.002 0.998 41 H 0.242 0.758 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.156 0.844 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.419 -3.802 0.361 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.017 4.017 3 C -0.147 4.147 4 C -0.100 4.100 5 C 0.345 3.655 6 O -0.454 6.454 7 N -0.319 5.319 8 C -0.020 4.020 9 C -0.163 4.163 10 C 0.056 3.944 11 H 0.032 0.968 12 C -0.124 4.124 13 H 0.121 0.879 14 C -0.168 4.168 15 C 0.059 3.941 16 N -0.333 5.333 17 C -0.348 4.348 18 H 0.108 0.892 19 C -0.257 4.257 20 N -0.600 5.600 21 Si 0.792 3.208 22 H -0.223 1.223 23 H -0.230 1.230 24 H -0.183 1.183 25 C 0.010 3.990 26 C -0.177 4.177 27 C -0.052 4.052 28 N -0.199 5.199 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.033 0.967 40 H 0.020 0.980 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.174 0.826 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -18.910 -4.157 0.707 19.374 hybrid contribution 2.100 0.322 0.108 2.127 sum -16.810 -3.835 0.815 17.261 Atomic orbital electron populations 1.20824 0.86062 1.04707 1.04275 1.21759 0.98767 0.87181 0.93953 1.22171 0.92579 1.00742 0.99248 1.20286 0.94927 0.93193 1.01574 1.18571 0.80612 0.87776 0.78524 1.90722 1.69803 1.37991 1.46890 1.47988 1.18227 1.17278 1.48360 1.22390 1.00353 0.88320 0.90905 1.21547 0.99274 0.98822 0.96614 1.20459 0.85188 0.93637 0.95095 0.96774 1.22623 0.97515 0.96994 0.95224 0.87851 1.23016 0.94303 0.97274 1.02205 1.20978 0.92558 0.85069 0.95509 1.44540 1.11503 1.08970 1.68280 1.19315 0.99936 0.89583 1.26013 0.89179 1.25522 0.98492 1.00256 1.01419 1.70190 1.15191 1.30062 1.44602 0.85285 0.78511 0.80948 0.76022 1.22316 1.23014 1.18316 1.21324 0.93524 0.86814 0.97348 1.22748 1.02823 0.92189 0.99966 1.23206 0.88844 0.99248 0.93864 1.67503 1.10837 1.29763 1.11752 0.89152 0.88903 0.89773 0.83420 0.91200 0.86681 0.90608 0.90463 0.90303 0.90792 0.96723 0.97980 0.94851 0.89906 0.92721 0.82629 0.79188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.17 71.24 0.72 -0.59 16 2 C 0.12 2.45 6.78 42.55 0.29 2.74 16 3 C -0.13 -2.90 9.34 22.63 0.21 -2.69 16 4 C -0.09 -2.32 5.43 -19.88 -0.11 -2.43 16 5 C 0.56 17.71 7.47 86.88 0.65 18.36 16 6 O -0.57 -21.45 16.29 -3.76 -0.06 -21.51 16 7 N -0.59 -18.73 2.94 -823.58 -2.42 -21.15 16 8 C 0.10 3.02 4.82 86.27 0.42 3.43 16 9 C -0.12 -3.80 5.20 30.01 0.16 -3.65 16 10 C 0.16 5.98 2.85 44.73 0.13 6.11 16 11 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 12 C -0.10 -3.39 3.84 -9.50 -0.04 -3.42 16 13 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 14 C -0.13 -4.53 6.28 32.15 0.20 -4.33 16 15 C 0.18 8.63 4.65 86.71 0.40 9.03 16 16 N -0.61 -28.12 3.12 -674.36 -2.11 -30.23 16 17 C -0.22 -11.04 8.96 84.03 0.75 -10.28 16 18 H 0.09 4.23 6.78 -2.91 -0.02 4.21 16 19 C -0.06 -3.43 5.48 84.86 0.46 -2.96 16 20 N -0.95 -55.23 10.44 21.65 0.23 -55.00 16 21 Si 0.96 43.27 29.56 68.60 2.03 45.29 16 22 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 25 C 0.13 4.54 5.44 86.29 0.47 5.01 16 26 C -0.16 -3.50 7.50 22.63 0.17 -3.33 16 27 C 0.10 2.06 11.17 84.67 0.95 3.00 16 28 N -0.49 -10.63 10.25 -184.03 -1.89 -12.52 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 0.90 8.07 -2.39 -0.02 0.88 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.15 3.14 8.03 -2.91 -0.02 3.11 16 33 H 0.07 2.46 7.48 -2.39 -0.02 2.44 16 34 H 0.12 2.78 4.10 -2.39 -0.01 2.77 16 35 H 0.08 2.37 7.03 -2.39 -0.02 2.36 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.51 7.97 -2.38 -0.02 2.49 16 38 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.01 0.78 6.91 -2.38 -0.02 0.76 16 40 H 0.00 0.11 7.67 -2.39 -0.02 0.09 16 41 H 0.24 13.94 8.31 -92.70 -0.77 13.16 16 42 H 0.08 2.81 6.99 -2.39 -0.02 2.80 16 43 H 0.05 2.18 6.79 -2.39 -0.02 2.17 16 44 H 0.16 3.34 5.90 -2.91 -0.02 3.32 16 45 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -66.82 348.27 2.61 -64.21 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.00 Total: 16.91 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.84 Total: 13.99 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -6.19 Total: -118.89 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.06 Total: -21.51 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -66.82 2.61 -64.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036848699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.177 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds