Wall clock time and date at job start Tue Mar 31 2020 10:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38361 * 119.45949 * 2 1 4 4 C 1.38353 * 119.30399 * 180.02562 * 3 2 1 5 5 C 1.40029 * 118.28721 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.55513 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99841 * 174.16248 * 6 5 4 8 8 N 1.34771 * 120.00125 * 354.17093 * 6 5 4 9 9 C 1.46502 * 119.99946 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47487 * 179.97438 * 9 8 6 11 11 H 1.09001 * 112.95954 * 53.31807 * 10 9 8 12 12 C 1.53945 * 113.77337 * 184.99935 * 10 9 8 13 13 C 1.53947 * 86.28950 * 137.90915 * 12 10 9 14 14 N 1.47576 * 113.77123 * 281.49727 * 10 9 8 15 15 C 1.36938 * 134.49050 * 41.05646 * 14 10 9 16 16 H 1.08004 * 120.00125 * 359.97438 * 15 14 10 17 17 C 1.38810 * 120.00037 * 179.97438 * 15 14 10 18 18 N 1.31623 * 120.00091 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00395 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47383 * 89.99722 * 19 17 15 21 21 H 1.48500 * 109.47479 * 210.00256 * 19 17 15 22 22 H 1.48504 * 109.47020 * 330.00395 * 19 17 15 23 23 C 1.39514 * 118.88356 * 0.02562 * 5 4 3 24 24 C 1.50698 * 119.71788 * 180.02562 * 23 5 4 25 25 C 1.52998 * 117.50073 * 103.44763 * 24 23 5 26 26 C 1.53006 * 117.50198 * 172.07461 * 24 23 5 27 27 N 1.31696 * 120.56833 * 0.26902 * 23 5 4 28 28 H 1.08997 * 109.47294 * 89.99652 * 1 2 3 29 29 H 1.09005 * 109.47152 * 209.99984 * 1 2 3 30 30 H 1.09001 * 109.47317 * 329.99763 * 1 2 3 31 31 H 1.08007 * 120.34645 * 0.02562 * 3 2 1 32 32 H 1.07993 * 120.85537 * 180.02562 * 4 3 2 33 33 H 0.96996 * 120.00564 * 359.97438 * 8 6 5 34 34 H 1.08994 * 109.47252 * 299.99696 * 9 8 6 35 35 H 1.09001 * 109.46915 * 59.99740 * 9 8 6 36 36 H 1.08996 * 113.74190 * 252.25989 * 12 10 9 37 37 H 1.09000 * 113.73869 * 23.45872 * 12 10 9 38 38 H 1.09001 * 113.76890 * 90.69399 * 13 12 10 39 39 H 1.08996 * 113.77105 * 221.98193 * 13 12 10 40 40 H 0.96996 * 120.00025 * 179.97438 * 18 17 15 41 41 H 1.08999 * 115.55773 * 317.75834 * 24 23 5 42 42 H 1.09000 * 117.49850 * 0.02562 * 25 24 23 43 43 H 1.08993 * 117.50033 * 214.97538 * 25 24 23 44 44 H 1.08991 * 117.50227 * 145.01913 * 26 24 23 45 45 H 1.09001 * 117.49090 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2010 -0.0005 5 6 4.2312 -0.0339 -0.0005 6 6 5.7083 -0.0964 -0.0005 7 8 6.2712 -1.1684 0.1066 8 7 6.4306 1.0351 -0.1191 9 6 7.8944 0.9732 -0.1185 10 6 8.4647 2.3853 -0.2658 11 1 8.0701 3.0825 0.4733 12 6 9.9979 2.4245 -0.3993 13 6 9.7756 3.4874 -1.4906 14 7 8.4315 2.8990 -1.6488 15 6 7.5196 2.8496 -2.6692 16 1 6.5778 2.3402 -2.5277 17 6 7.8056 3.4542 -3.8856 18 7 8.9532 4.0755 -4.0580 19 14 6.5621 3.3863 -5.2778 20 1 5.6561 4.5596 -5.1901 21 1 7.2753 3.4078 -6.5801 22 1 5.7661 2.1372 -5.1700 23 6 3.4717 -1.2042 -0.0005 24 6 4.1628 -2.5433 0.0001 25 6 4.2058 -3.3155 1.3202 26 6 3.2922 -3.7876 0.1872 27 7 2.1559 -1.1486 -0.0058 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6443 2.1382 0.0004 32 1 4.1274 2.1265 -0.0001 33 1 5.9815 1.8906 -0.2048 34 1 8.2392 0.5378 0.8193 35 1 8.2322 0.3566 -0.9514 36 1 10.5060 2.8049 0.4868 37 1 10.4299 1.4953 -0.7708 38 1 9.7659 4.5097 -1.1126 39 1 10.4173 3.3625 -2.3627 40 1 9.1532 4.4977 -4.9080 41 1 5.0256 -2.6275 -0.6606 42 1 3.7339 -2.8551 2.1882 43 1 5.0969 -3.9078 1.5280 44 1 3.5824 -4.6903 -0.3502 45 1 2.2197 -3.6374 0.3103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038560407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:00 Heat of formation + Delta-G solvation = 79.129427 kcal Electronic energy + Delta-G solvation = -26197.284039 eV Core-core repulsion = 22603.399858 eV Total energy + Delta-G solvation = -3593.884181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.86899 -39.01315 -37.87591 -36.92134 -34.20148 -33.11103 -32.21790 -32.08042 -28.71169 -27.96167 -27.38157 -24.59822 -23.40234 -23.13177 -22.33050 -21.98955 -20.76839 -20.35056 -19.19450 -17.77362 -16.73631 -16.57531 -16.24169 -15.40308 -15.27161 -15.04674 -14.80861 -14.51588 -14.33313 -14.08897 -13.82089 -13.55817 -13.12969 -12.98264 -12.65312 -12.55073 -12.37170 -11.90101 -11.77438 -11.46156 -11.43559 -11.14513 -11.05478 -10.76219 -10.68125 -10.58237 -10.41697 -10.01228 -9.86422 -9.85983 -9.78243 -9.54754 -9.18835 -8.88883 -8.83303 -8.55345 -6.93280 -5.80180 -3.12799 0.61628 1.09640 2.99284 3.34213 3.39791 3.41969 3.42668 3.67590 3.94315 4.11498 4.39376 4.46618 4.56408 4.74787 4.90026 5.07683 5.08930 5.13666 5.17359 5.28415 5.35440 5.36871 5.37481 5.56232 5.58451 5.67502 5.72901 5.75459 5.87820 5.88862 5.93169 6.02247 6.05907 6.22666 6.28014 6.33914 6.38006 6.52376 6.58663 6.67285 6.83581 7.21210 7.37401 7.55832 7.76943 7.87716 7.94772 8.47045 9.00521 9.67459 10.55490 11.36458 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.004014 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.228018 B = 6973.482063 C = 8105.933096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.149 3.851 3 C -0.186 4.186 4 C -0.035 4.035 5 C -0.183 4.183 6 C 0.559 3.441 7 O -0.534 6.534 8 N -0.708 5.708 9 C 0.124 3.876 10 C 0.125 3.875 11 H 0.049 0.951 12 C -0.155 4.155 13 C 0.159 3.841 14 N -0.602 5.602 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.905 3.095 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.281 1.281 23 C 0.221 3.779 24 C -0.102 4.102 25 C -0.151 4.151 26 C -0.170 4.170 27 N -0.488 5.488 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.253 0.747 41 H 0.138 0.862 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 -7.263 11.518 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.011 3.989 3 C -0.206 4.206 4 C -0.061 4.061 5 C -0.188 4.188 6 C 0.345 3.655 7 O -0.413 6.413 8 N -0.358 5.358 9 C 0.000 4.000 10 C 0.017 3.983 11 H 0.066 0.934 12 C -0.194 4.194 13 C 0.034 3.966 14 N -0.328 5.328 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.735 3.265 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.082 3.918 24 C -0.121 4.121 25 C -0.188 4.188 26 C -0.207 4.207 27 N -0.198 5.198 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.235 0.765 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.156 0.844 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.083 -8.708 11.238 18.658 hybrid contribution -0.435 1.648 -0.962 1.957 sum -12.518 -7.060 10.276 17.667 Atomic orbital electron populations 1.20758 0.88555 1.03560 1.03359 1.21468 0.97134 0.88205 0.92127 1.21887 0.94517 0.99512 1.04660 1.21830 0.94748 0.97481 0.92091 1.20801 0.95021 0.94477 1.08516 1.17922 0.85983 0.84449 0.77191 1.90718 1.72144 1.28224 1.50170 1.45886 1.08067 1.08949 1.72926 1.21794 0.77914 0.99020 1.01269 1.22512 0.94416 0.91953 0.89395 0.93366 1.23767 0.94650 1.01430 0.99560 1.22193 0.87037 0.92633 0.94754 1.46068 1.17592 1.62604 1.06586 1.18913 0.96724 1.29416 0.89706 0.90496 1.24741 0.97423 1.00334 0.97707 1.69813 1.22312 1.40028 1.24395 0.86230 0.80411 0.77647 0.82172 1.21642 1.21554 1.20697 1.20468 0.88124 0.93463 0.89738 1.21038 1.00914 0.87091 1.03012 1.22801 1.01812 1.02570 0.91660 1.22991 0.98383 0.97108 1.02264 1.67312 1.08929 1.29019 1.14494 0.90059 0.90343 0.90484 0.84187 0.84092 0.76498 0.91968 0.90768 0.92792 0.90459 0.95584 0.90820 0.93662 0.84423 0.89462 0.88309 0.88817 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.16 36.00 0.37 -0.47 16 2 C 0.15 1.75 6.78 -82.51 -0.56 1.19 16 3 C -0.19 -2.07 9.72 -39.49 -0.38 -2.46 16 4 C -0.04 -0.45 9.63 -38.87 -0.37 -0.83 16 5 C -0.18 -2.80 5.89 -104.82 -0.62 -3.42 16 6 C 0.56 9.60 7.74 -12.33 -0.10 9.50 16 7 O -0.53 -10.19 13.56 5.32 0.07 -10.12 16 8 N -0.71 -11.85 5.48 -61.25 -0.34 -12.18 16 9 C 0.12 2.20 5.54 -4.04 -0.02 2.17 16 10 C 0.12 2.33 4.33 -66.86 -0.29 2.04 16 11 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 12 C -0.16 -2.77 7.86 -25.80 -0.20 -2.97 16 13 C 0.16 3.58 7.51 -2.98 -0.02 3.56 16 14 N -0.60 -14.37 3.57 -170.76 -0.61 -14.98 16 15 C -0.22 -5.82 10.51 -15.06 -0.16 -5.98 16 16 H 0.08 1.97 7.80 -52.48 -0.41 1.56 16 17 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 18 N -0.92 -26.66 11.39 55.49 0.63 -26.03 16 19 Si 0.90 21.93 29.55 -169.99 -5.02 16.90 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.22 3.35 6.49 -82.18 -0.53 2.82 16 24 C -0.10 -1.49 4.36 -91.77 -0.40 -1.89 16 25 C -0.15 -1.89 10.23 -26.73 -0.27 -2.16 16 26 C -0.17 -2.05 10.02 -26.72 -0.27 -2.31 16 27 N -0.49 -6.83 9.22 -5.42 -0.05 -6.88 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.14 1.58 6.56 -52.49 -0.34 1.23 16 33 H 0.40 6.27 6.61 -40.82 -0.27 6.00 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.86 7.16 -51.93 -0.37 1.48 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 41 H 0.14 2.25 6.54 -51.93 -0.34 1.91 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.10 1.24 7.57 -51.93 -0.39 0.85 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -31.78 372.59 -10.39 -42.17 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.75 Total: 6.96 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.93 Total: -1.45 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.36 Total: -60.07 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.78 -10.39 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038560407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.298 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds