Wall clock time and date at job start Tue Mar 31 2020 11:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38637 * 120.47406 * 2 1 4 4 C 1.38579 * 118.48997 * 180.02562 * 3 2 1 5 5 C 1.38594 * 119.35345 * 0.27473 * 4 3 2 6 6 N 1.31500 * 120.89944 * 359.44497 * 5 4 3 7 7 C 1.32741 * 121.64316 * 0.54725 * 6 5 4 8 8 C 1.48170 * 119.72551 * 179.72568 * 7 6 5 9 9 O 1.21511 * 119.99617 * 255.77062 * 8 7 6 10 10 N 1.34771 * 119.99930 * 75.76334 * 8 7 6 11 11 C 1.46943 * 120.44114 * 184.95584 * 10 8 7 12 12 C 1.53601 * 108.53158 * 125.75259 * 11 10 8 13 13 H 1.08997 * 110.59798 * 172.15880 * 12 11 10 14 14 C 1.53362 * 108.68889 * 294.36365 * 12 11 10 15 15 C 1.53002 * 109.27300 * 60.28611 * 14 12 11 16 16 C 1.53014 * 109.79425 * 60.57456 * 15 14 12 17 17 C 1.53375 * 109.25360 * 299.42136 * 16 15 14 18 18 H 1.09001 * 111.08492 * 177.82774 * 17 16 15 19 19 C 1.46945 * 120.44463 * 4.68358 * 10 8 7 20 20 N 1.47567 * 107.98495 * 56.37769 * 17 16 15 21 21 C 1.36934 * 121.61209 * 122.23725 * 20 17 16 22 22 H 1.07999 * 120.00160 * 31.96434 * 21 20 17 23 23 C 1.38811 * 120.00122 * 211.96545 * 21 20 17 24 24 N 1.31619 * 120.00153 * 10.33998 * 23 21 20 25 25 Si 1.86796 * 120.00155 * 190.34623 * 23 21 20 26 26 H 1.48509 * 109.47434 * 89.99817 * 25 23 21 27 27 H 1.48500 * 109.47246 * 209.99608 * 25 23 21 28 28 H 1.48504 * 109.47133 * 329.99615 * 25 23 21 29 29 H 1.08991 * 109.46962 * 85.25463 * 1 2 3 30 30 H 1.08995 * 109.46895 * 205.26081 * 1 2 3 31 31 H 1.09007 * 109.46888 * 325.25354 * 1 2 3 32 32 H 1.08003 * 120.74843 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.32049 * 179.97438 * 4 3 2 34 34 H 1.08002 * 119.55087 * 179.72635 * 5 4 3 35 35 H 1.09004 * 109.62691 * 245.46371 * 11 10 8 36 36 H 1.09002 * 109.63177 * 6.04455 * 11 10 8 37 37 H 1.08996 * 109.50574 * 180.23365 * 14 12 11 38 38 H 1.09004 * 109.50399 * 300.34980 * 14 12 11 39 39 H 1.08999 * 109.41937 * 300.47747 * 15 14 12 40 40 H 1.09003 * 109.36514 * 180.63514 * 15 14 12 41 41 H 1.08997 * 109.51355 * 179.48867 * 16 15 14 42 42 H 1.09001 * 109.54194 * 59.37255 * 16 15 14 43 43 H 1.08997 * 109.62450 * 353.95124 * 19 10 8 44 44 H 1.09004 * 109.62569 * 114.51964 * 19 10 8 45 45 H 0.96995 * 120.00551 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5950 1.1469 -0.0005 5 6 4.2322 -0.0839 -0.0069 6 7 3.5406 -1.2024 -0.0014 7 6 2.2132 -1.2004 -0.0005 8 6 1.4766 -2.4860 -0.0004 9 8 0.9494 -2.8842 -1.0202 10 7 1.3914 -3.2138 1.1307 11 6 0.7579 -4.5395 1.1171 12 6 1.7457 -5.5586 1.7046 13 1 1.2632 -6.5267 1.8390 14 6 2.9536 -5.6695 0.7663 15 6 3.6303 -4.3022 0.6505 16 6 4.1124 -3.8442 2.0286 17 6 2.9087 -3.7259 2.9718 18 1 3.2234 -3.4376 3.9748 19 6 1.9361 -2.6946 2.3929 20 7 2.2207 -5.0310 2.9984 21 6 2.0324 -5.7195 4.1670 22 1 1.8919 -5.1826 5.0935 23 6 2.0222 -7.1076 4.1609 24 7 2.3927 -7.7637 3.0817 25 14 1.4824 -8.0444 5.6841 26 1 0.0174 -8.2809 5.6267 27 1 2.1922 -9.3475 5.7412 28 1 1.8084 -7.2496 6.8955 29 1 -0.3633 0.0850 -1.0241 30 1 -0.3633 -0.9294 0.4385 31 1 -0.3633 0.8445 0.5858 32 1 1.6901 2.1415 -0.0004 33 1 4.1722 2.0597 -0.0010 34 1 5.3114 -0.1250 -0.0118 35 1 -0.1489 -4.5182 1.7215 36 1 0.5118 -4.8173 0.0922 37 1 3.6621 -6.3933 1.1690 38 1 2.6203 -5.9952 -0.2192 39 1 2.9179 -3.5774 0.2565 40 1 4.4825 -4.3767 -0.0251 41 1 4.6016 -2.8743 1.9394 42 1 4.8180 -4.5724 2.4286 43 1 2.4645 -1.7597 2.2065 44 1 1.1240 -2.5247 3.0998 45 1 2.3852 -8.7336 3.0772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039541406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:29 Heat of formation + Delta-G solvation = 56.132085 kcal Electronic energy + Delta-G solvation = -28457.518808 eV Core-core repulsion = 24862.637388 eV Total energy + Delta-G solvation = -3594.881421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15195 -39.59575 -37.57774 -34.00234 -33.74394 -32.59792 -32.28927 -31.61194 -30.27135 -27.74438 -26.78993 -25.60738 -24.50115 -23.35109 -22.33632 -21.40122 -21.14851 -19.87495 -18.26026 -17.60089 -16.92972 -16.21194 -15.92575 -15.53952 -14.74741 -14.59198 -14.44270 -14.20333 -13.88272 -13.47783 -13.31303 -13.22644 -12.94939 -12.85385 -12.77965 -12.58446 -12.36342 -11.93045 -11.85089 -11.70798 -11.31859 -11.07054 -10.90151 -10.67688 -10.25687 -10.10427 -10.02652 -10.00453 -9.88466 -9.83071 -9.44851 -9.34811 -9.17561 -8.96620 -8.47541 -7.82953 -6.52648 -5.79320 -3.30052 0.82547 1.13329 2.73347 3.29056 3.35896 3.43115 3.43841 3.64036 4.33194 4.45537 4.56061 4.62844 4.80959 4.86840 5.17566 5.23726 5.36621 5.38906 5.47084 5.49772 5.71703 5.75985 5.83725 5.87635 5.95092 6.01463 6.03751 6.08772 6.12361 6.24859 6.34951 6.46572 6.54329 6.56234 6.61697 6.83583 6.84756 7.02385 7.10829 7.20943 7.28149 7.59877 7.69675 7.75387 7.82487 7.86222 8.41403 8.43352 9.16930 9.76600 10.41016 11.26591 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.004446 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.104259 B = 6296.481232 C = 6418.164613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.104 4.104 3 C -0.080 4.080 4 C -0.162 4.162 5 C 0.095 3.905 6 N -0.442 5.442 7 C 0.102 3.898 8 C 0.576 3.424 9 O -0.541 6.541 10 N -0.575 5.575 11 C 0.091 3.909 12 C 0.179 3.821 13 H 0.119 0.881 14 C -0.115 4.115 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.152 3.848 18 H 0.076 0.924 19 C 0.100 3.900 20 N -0.578 5.578 21 C -0.251 4.251 22 H 0.065 0.935 23 C 0.008 3.992 24 N -0.897 5.897 25 Si 0.904 3.096 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.082 0.918 40 H 0.029 0.971 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 17.266 -4.483 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.107 4.107 3 C -0.106 4.106 4 C -0.181 4.181 5 C -0.064 4.064 6 N -0.151 5.151 7 C -0.037 4.037 8 C 0.363 3.637 9 O -0.418 6.418 10 N -0.306 5.306 11 C -0.032 4.032 12 C 0.072 3.928 13 H 0.136 0.864 14 C -0.154 4.154 15 C -0.167 4.167 16 C -0.154 4.154 17 C 0.044 3.956 18 H 0.094 0.906 19 C -0.025 4.025 20 N -0.300 5.300 21 C -0.381 4.381 22 H 0.083 0.917 23 C -0.191 4.191 24 N -0.541 5.541 25 Si 0.734 3.266 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.172 16.000 -4.977 16.757 hybrid contribution -0.347 0.326 0.790 0.922 sum -0.175 16.327 -4.187 16.856 Atomic orbital electron populations 1.20783 0.89812 1.03343 1.03134 1.20822 0.97722 0.92772 0.99394 1.21409 0.94178 0.97734 0.97240 1.22275 0.95172 0.99736 1.00957 1.22846 1.00500 0.87314 0.95783 1.67779 1.06396 1.31280 1.09676 1.21086 0.90458 0.93591 0.98589 1.17651 0.79555 0.82579 0.83937 1.90776 1.48185 1.70496 1.32390 1.48109 1.56211 1.18158 1.08116 1.22664 0.96977 0.81798 1.01771 1.21180 0.91609 0.95857 0.84143 0.86398 1.21827 0.99584 0.96544 0.97456 1.22004 0.99730 0.98817 0.96171 1.21846 0.97965 0.99132 0.96452 1.21122 0.90452 0.87398 0.96635 0.90624 1.22265 0.97924 0.97400 0.84886 1.44358 1.63578 1.18384 1.03645 1.19120 1.43691 0.88321 0.86936 0.91733 1.25163 0.99765 0.97066 0.97129 1.69902 1.49727 1.06872 1.27615 0.86271 0.78167 0.79364 0.82757 1.21477 1.21763 1.20543 0.90240 0.91114 0.90856 0.84456 0.84546 0.82259 0.91955 0.90115 0.90975 0.94764 0.90053 0.95239 0.93832 0.92813 0.91575 0.91759 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.71 36.00 0.35 -0.91 16 2 C -0.10 -1.33 5.93 -104.09 -0.62 -1.94 16 3 C -0.08 -0.77 9.87 -39.31 -0.39 -1.16 16 4 C -0.16 -1.46 10.11 -39.32 -0.40 -1.86 16 5 C 0.09 1.08 11.18 -17.56 -0.20 0.88 16 6 N -0.44 -6.77 9.26 -9.80 -0.09 -6.86 16 7 C 0.10 1.63 4.57 -83.01 -0.38 1.25 16 8 C 0.58 10.77 3.24 -12.18 -0.04 10.73 16 9 O -0.54 -11.55 16.52 5.36 0.09 -11.47 16 10 N -0.57 -10.79 1.66 -173.52 -0.29 -11.08 16 11 C 0.09 1.85 5.88 -3.49 -0.02 1.83 16 12 C 0.18 4.14 2.63 -66.84 -0.18 3.96 16 13 H 0.12 3.07 5.93 -51.93 -0.31 2.76 16 14 C -0.12 -2.62 5.52 -26.54 -0.15 -2.77 16 15 C -0.13 -2.69 5.39 -26.72 -0.14 -2.84 16 16 C -0.11 -2.29 5.58 -26.53 -0.15 -2.44 16 17 C 0.15 3.08 3.62 -67.09 -0.24 2.83 16 18 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16 19 C 0.10 1.77 5.76 -3.74 -0.02 1.74 16 20 N -0.58 -13.68 2.52 -155.70 -0.39 -14.07 16 21 C -0.25 -6.51 9.72 -15.06 -0.15 -6.66 16 22 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 23 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 24 N -0.90 -24.72 10.65 55.49 0.59 -24.13 16 25 Si 0.90 21.01 29.57 -169.99 -5.03 15.99 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 31 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.66 7.01 -51.93 -0.36 1.30 16 37 H 0.07 1.84 7.84 -51.93 -0.41 1.43 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.67 1.87 -52.45 -0.10 1.57 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.07 6.08 -51.93 -0.32 0.75 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -30.54 344.44 -9.20 -39.73 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.47 Total: 3.93 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.80 Total: 2.77 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.18 Total: -56.14 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.54 -9.20 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039541406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.865 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds