Wall clock time and date at job start Tue Mar 31 2020 11:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38637 * 120.47406 * 2 1 4 4 C 1.38579 * 118.48997 * 180.02562 * 3 2 1 5 5 C 1.38594 * 119.35345 * 0.27473 * 4 3 2 6 6 N 1.31500 * 120.89944 * 359.44497 * 5 4 3 7 7 C 1.32741 * 121.64316 * 0.54725 * 6 5 4 8 8 C 1.48170 * 119.72551 * 179.72568 * 7 6 5 9 9 O 1.21511 * 119.99617 * 255.77062 * 8 7 6 10 10 N 1.34771 * 119.99930 * 75.76334 * 8 7 6 11 11 C 1.46943 * 120.44114 * 184.95584 * 10 8 7 12 12 C 1.53601 * 108.53158 * 125.75259 * 11 10 8 13 13 H 1.08997 * 110.59798 * 172.15880 * 12 11 10 14 14 C 1.53362 * 108.68889 * 294.36365 * 12 11 10 15 15 C 1.53002 * 109.27300 * 60.28611 * 14 12 11 16 16 C 1.53014 * 109.79425 * 60.57456 * 15 14 12 17 17 C 1.53375 * 109.25360 * 299.42136 * 16 15 14 18 18 H 1.09001 * 111.08492 * 177.82774 * 17 16 15 19 19 C 1.46945 * 120.44463 * 4.68358 * 10 8 7 20 20 N 1.47567 * 107.98495 * 56.37769 * 17 16 15 21 21 C 1.36934 * 121.61209 * 122.23725 * 20 17 16 22 22 H 1.07999 * 120.00160 * 31.96434 * 21 20 17 23 23 C 1.38811 * 120.00122 * 211.96545 * 21 20 17 24 24 N 1.31619 * 120.00153 * 10.33998 * 23 21 20 25 25 Si 1.86796 * 120.00155 * 190.34623 * 23 21 20 26 26 H 1.48509 * 109.47434 * 89.99817 * 25 23 21 27 27 H 1.48500 * 109.47246 * 209.99608 * 25 23 21 28 28 H 1.48504 * 109.47133 * 329.99615 * 25 23 21 29 29 H 1.08991 * 109.46962 * 85.25463 * 1 2 3 30 30 H 1.08995 * 109.46895 * 205.26081 * 1 2 3 31 31 H 1.09007 * 109.46888 * 325.25354 * 1 2 3 32 32 H 1.08003 * 120.74843 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.32049 * 179.97438 * 4 3 2 34 34 H 1.08002 * 119.55087 * 179.72635 * 5 4 3 35 35 H 1.09004 * 109.62691 * 245.46371 * 11 10 8 36 36 H 1.09002 * 109.63177 * 6.04455 * 11 10 8 37 37 H 1.08996 * 109.50574 * 180.23365 * 14 12 11 38 38 H 1.09004 * 109.50399 * 300.34980 * 14 12 11 39 39 H 1.08999 * 109.41937 * 300.47747 * 15 14 12 40 40 H 1.09003 * 109.36514 * 180.63514 * 15 14 12 41 41 H 1.08997 * 109.51355 * 179.48867 * 16 15 14 42 42 H 1.09001 * 109.54194 * 59.37255 * 16 15 14 43 43 H 1.08997 * 109.62450 * 353.95124 * 19 10 8 44 44 H 1.09004 * 109.62569 * 114.51964 * 19 10 8 45 45 H 0.96995 * 120.00551 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5950 1.1469 -0.0005 5 6 4.2322 -0.0839 -0.0069 6 7 3.5406 -1.2024 -0.0014 7 6 2.2132 -1.2004 -0.0005 8 6 1.4766 -2.4860 -0.0004 9 8 0.9494 -2.8842 -1.0202 10 7 1.3914 -3.2138 1.1307 11 6 0.7579 -4.5395 1.1171 12 6 1.7457 -5.5586 1.7046 13 1 1.2632 -6.5267 1.8390 14 6 2.9536 -5.6695 0.7663 15 6 3.6303 -4.3022 0.6505 16 6 4.1124 -3.8442 2.0286 17 6 2.9087 -3.7259 2.9718 18 1 3.2234 -3.4376 3.9748 19 6 1.9361 -2.6946 2.3929 20 7 2.2207 -5.0310 2.9984 21 6 2.0324 -5.7195 4.1670 22 1 1.8919 -5.1826 5.0935 23 6 2.0222 -7.1076 4.1609 24 7 2.3927 -7.7637 3.0817 25 14 1.4824 -8.0444 5.6841 26 1 0.0174 -8.2809 5.6267 27 1 2.1922 -9.3475 5.7412 28 1 1.8084 -7.2496 6.8955 29 1 -0.3633 0.0850 -1.0241 30 1 -0.3633 -0.9294 0.4385 31 1 -0.3633 0.8445 0.5858 32 1 1.6901 2.1415 -0.0004 33 1 4.1722 2.0597 -0.0010 34 1 5.3114 -0.1250 -0.0118 35 1 -0.1489 -4.5182 1.7215 36 1 0.5118 -4.8173 0.0922 37 1 3.6621 -6.3933 1.1690 38 1 2.6203 -5.9952 -0.2192 39 1 2.9179 -3.5774 0.2565 40 1 4.4825 -4.3767 -0.0251 41 1 4.6016 -2.8743 1.9394 42 1 4.8180 -4.5724 2.4286 43 1 2.4645 -1.7597 2.2065 44 1 1.1240 -2.5247 3.0998 45 1 2.3852 -8.7336 3.0772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039541406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:28 Heat of formation + Delta-G solvation = 38.859433 kcal Electronic energy + Delta-G solvation = -28458.267807 eV Core-core repulsion = 24862.637388 eV Total energy + Delta-G solvation = -3595.630419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48158 -40.78410 -39.13361 -35.70723 -34.64671 -34.37368 -33.67007 -32.94324 -32.07817 -28.93710 -28.18470 -27.19992 -25.91912 -24.88423 -23.25532 -23.06617 -22.84225 -21.22521 -20.03837 -19.00503 -18.21423 -17.52643 -17.35204 -16.69079 -16.39914 -16.19345 -15.72842 -15.53887 -15.23211 -15.09567 -14.72474 -14.61440 -14.43239 -14.09308 -13.97779 -13.73871 -13.60386 -13.42527 -13.40995 -13.10202 -12.95125 -12.69690 -12.67399 -12.45198 -12.08996 -11.93181 -11.75054 -11.67478 -11.40935 -11.12350 -11.04085 -10.69189 -10.46391 -10.34757 -9.88577 -9.48557 -8.42628 -7.79416 -5.33054 -0.06837 0.33595 1.35615 1.50043 1.51187 1.58988 1.90556 2.52923 2.75366 3.17663 3.34422 3.49080 3.67548 3.87283 4.02396 4.10679 4.12049 4.16219 4.21459 4.30762 4.37374 4.40802 4.51418 4.55095 4.60887 4.67270 4.70636 4.76665 4.81708 4.85115 4.88031 5.10074 5.12099 5.14281 5.19892 5.25060 5.30408 5.35777 5.42761 5.53937 5.67274 5.72898 5.73078 5.87494 6.34758 6.44746 6.89020 6.99686 7.17370 7.82931 8.44801 9.23611 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.004446 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.104259 B = 6296.481232 C = 6418.164613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C -0.073 4.073 4 C -0.138 4.138 5 C 0.083 3.917 6 N -0.478 5.478 7 C 0.065 3.935 8 C 0.578 3.422 9 O -0.577 6.577 10 N -0.577 5.577 11 C 0.102 3.898 12 C 0.182 3.818 13 H 0.085 0.915 14 C -0.108 4.108 15 C -0.124 4.124 16 C -0.103 4.103 17 C 0.146 3.854 18 H 0.084 0.916 19 C 0.112 3.888 20 N -0.591 5.591 21 C -0.257 4.257 22 H 0.070 0.930 23 C -0.042 4.042 24 N -0.925 5.925 25 Si 0.966 3.034 26 H -0.288 1.288 27 H -0.300 1.300 28 H -0.269 1.269 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.093 0.907 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.027 0.973 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 21.550 -3.864 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.112 4.112 3 C -0.098 4.098 4 C -0.158 4.158 5 C -0.076 4.076 6 N -0.188 5.188 7 C -0.073 4.073 8 C 0.367 3.633 9 O -0.457 6.457 10 N -0.308 5.308 11 C -0.022 4.022 12 C 0.074 3.926 13 H 0.102 0.898 14 C -0.147 4.147 15 C -0.162 4.162 16 C -0.142 4.142 17 C 0.039 3.961 18 H 0.102 0.898 19 C -0.012 4.012 20 N -0.313 5.313 21 C -0.387 4.387 22 H 0.088 0.912 23 C -0.238 4.238 24 N -0.570 5.570 25 Si 0.795 3.205 26 H -0.215 1.215 27 H -0.227 1.227 28 H -0.194 1.194 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.194 0.806 33 H 0.197 0.803 34 H 0.200 0.800 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.549 20.323 -4.344 20.789 hybrid contribution -0.398 -0.886 0.541 1.111 sum 0.152 19.438 -3.803 19.807 Atomic orbital electron populations 1.20813 0.89276 1.03317 1.03552 1.21032 0.98307 0.92811 0.99040 1.21874 0.94590 0.97928 0.95442 1.22743 0.95232 1.00350 0.97447 1.23374 1.01575 0.87322 0.95363 1.67626 1.06309 1.33736 1.11160 1.20645 0.91034 0.92643 1.02941 1.18222 0.78832 0.83451 0.82829 1.90737 1.49698 1.71780 1.33509 1.48104 1.56243 1.17487 1.08976 1.22306 0.96350 0.82473 1.01053 1.20940 0.91885 0.95299 0.84449 0.89753 1.21710 0.99032 0.97043 0.96932 1.21985 0.99672 0.97619 0.96941 1.21719 0.97453 0.99573 0.95436 1.21324 0.90946 0.86402 0.97403 0.89824 1.22165 0.97614 0.97106 0.84272 1.44499 1.64352 1.19394 1.03066 1.19430 1.42727 0.88705 0.87808 0.91250 1.25837 1.00486 0.97985 0.99488 1.70086 1.51223 1.06409 1.29328 0.85301 0.77350 0.77671 0.80206 1.21467 1.22736 1.19407 0.90170 0.93774 0.87602 0.80568 0.80265 0.79951 0.91601 0.90814 0.94424 0.95145 0.88946 0.95472 0.91165 0.95400 0.89262 0.90876 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 9.71 71.24 0.69 -1.55 16 2 C -0.11 -2.44 5.93 -19.52 -0.12 -2.55 16 3 C -0.07 -1.03 9.87 22.45 0.22 -0.81 16 4 C -0.14 -1.73 10.11 22.44 0.23 -1.50 16 5 C 0.08 1.56 11.18 84.83 0.95 2.51 16 6 N -0.48 -13.58 9.26 -184.91 -1.71 -15.30 16 7 C 0.07 1.96 4.57 41.90 0.19 2.15 16 8 C 0.58 21.56 3.24 86.88 0.28 21.84 16 9 O -0.58 -25.23 16.52 -3.75 -0.06 -25.29 16 10 N -0.58 -21.67 1.66 -821.20 -1.36 -23.04 16 11 C 0.10 4.30 5.88 86.50 0.51 4.81 16 12 C 0.18 8.76 2.63 45.11 0.12 8.88 16 13 H 0.08 4.67 5.93 -2.39 -0.01 4.65 16 14 C -0.11 -5.19 5.52 30.72 0.17 -5.02 16 15 C -0.12 -5.27 5.39 30.60 0.16 -5.11 16 16 C -0.10 -4.08 5.58 30.72 0.17 -3.91 16 17 C 0.15 5.84 3.62 44.95 0.16 6.00 16 18 H 0.08 3.20 8.01 -2.39 -0.02 3.18 16 19 C 0.11 3.82 5.76 86.34 0.50 4.32 16 20 N -0.59 -28.49 2.52 -646.52 -1.63 -30.13 16 21 C -0.26 -13.48 9.72 84.03 0.82 -12.66 16 22 H 0.07 3.52 7.85 -2.91 -0.02 3.50 16 23 C -0.04 -2.26 5.13 84.86 0.44 -1.83 16 24 N -0.93 -53.26 10.65 21.65 0.23 -53.03 16 25 Si 0.97 44.05 29.57 68.60 2.03 46.08 16 26 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.11 6.91 -2.39 -0.02 1.09 16 31 H 0.11 1.35 8.12 -2.38 -0.02 1.33 16 32 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.07 3.19 7.01 -2.39 -0.02 3.17 16 37 H 0.04 2.03 7.84 -2.39 -0.02 2.01 16 38 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.09 3.82 1.87 -3.41 -0.01 3.81 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 2.67 6.08 -2.39 -0.01 2.66 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -70.21 344.44 3.98 -66.23 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 1.00 Total: 18.90 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.49 Total: 15.57 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -4.47 Total: -121.49 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.06 Total: -25.29 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -70.21 3.98 -66.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039541406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.091 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds