Wall clock time and date at job start Tue Mar 31 2020 10:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38599 * 119.55123 * 2 1 4 4 C 1.38585 * 119.35097 * 179.97438 * 3 2 1 5 5 C 1.38635 * 118.48841 * 359.72911 * 4 3 2 6 6 C 1.39269 * 119.05715 * 0.52728 * 5 4 3 7 7 C 1.48174 * 119.71997 * 179.73254 * 6 5 4 8 8 O 1.21517 * 119.99985 * 359.73443 * 7 6 5 9 9 N 1.34775 * 119.99505 * 179.72831 * 7 6 5 10 10 C 1.48257 * 127.74072 * 359.97438 * 9 7 6 11 11 C 1.54714 * 104.66743 * 141.18636 * 10 9 7 12 12 C 1.53039 * 104.47511 * 23.66665 * 11 10 9 13 13 C 1.53893 * 111.37173 * 121.00916 * 12 11 10 14 14 C 1.55146 * 101.45103 * 154.99728 * 13 12 11 15 15 N 1.47543 * 105.06674 * 324.20824 * 14 13 12 16 16 C 1.36933 * 125.67013 * 203.97358 * 15 14 13 17 17 H 1.08000 * 119.99705 * 161.53429 * 16 15 14 18 18 C 1.38811 * 120.00238 * 341.53655 * 16 15 14 19 19 N 1.31611 * 120.00415 * 157.55885 * 18 16 15 20 20 Si 1.86803 * 119.99737 * 337.55880 * 18 16 15 21 21 H 1.48508 * 109.47049 * 84.53375 * 20 18 16 22 22 H 1.48504 * 109.47265 * 204.53539 * 20 18 16 23 23 H 1.48498 * 109.47123 * 324.53731 * 20 18 16 24 24 C 1.47593 * 108.51939 * 23.93693 * 15 14 13 25 25 C 1.48451 * 127.72831 * 179.97438 * 9 7 6 26 26 N 1.31495 * 119.54647 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47132 * 270.02991 * 1 2 3 28 28 H 1.09006 * 109.46858 * 30.02245 * 1 2 3 29 29 H 1.09000 * 109.47466 * 150.01958 * 1 2 3 30 30 H 1.07998 * 120.32724 * 359.94905 * 3 2 1 31 31 H 1.08005 * 120.75748 * 180.02562 * 4 3 2 32 32 H 1.07996 * 120.47199 * 180.28689 * 5 4 3 33 33 H 1.08998 * 110.39351 * 22.38910 * 10 9 7 34 34 H 1.08994 * 110.49303 * 260.03321 * 10 9 7 35 35 H 1.08999 * 110.43221 * 264.92106 * 11 10 9 36 36 H 1.09002 * 110.53972 * 142.46702 * 11 10 9 37 37 H 1.09000 * 111.02605 * 36.95132 * 13 12 11 38 38 H 1.08993 * 111.06101 * 273.05505 * 13 12 11 39 39 H 1.08997 * 110.33531 * 83.13663 * 14 13 12 40 40 H 1.08997 * 110.33394 * 205.28000 * 14 13 12 41 41 H 0.97001 * 120.00285 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.94871 * 238.65719 * 24 15 14 43 43 H 1.08997 * 109.96501 * 117.41540 * 24 15 14 44 44 H 1.08999 * 110.46457 * 99.70655 * 25 9 7 45 45 H 1.09000 * 110.46578 * 337.11366 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2008 0.0005 5 6 4.2334 -0.0199 0.0068 6 6 3.4820 -1.1925 0.0011 7 6 4.1691 -2.5053 0.0017 8 8 5.3832 -2.5556 0.0023 9 7 3.4474 -3.6435 0.0018 10 6 1.9713 -3.7821 0.0018 11 6 1.6902 -4.9798 -0.9362 12 6 2.9878 -5.7911 -0.9201 13 6 2.7451 -7.2274 -0.4237 14 6 3.9251 -7.9859 -1.0866 15 7 4.1077 -7.3386 -2.3998 16 6 4.6818 -7.9151 -3.5012 17 1 4.5110 -7.4951 -4.4814 18 6 5.4833 -9.0394 -3.3579 19 7 5.6730 -9.8470 -4.3797 20 14 6.2926 -9.4061 -1.7147 21 1 5.3375 -10.1391 -0.8452 22 1 7.5023 -10.2392 -1.9337 23 1 6.6812 -8.1317 -1.0590 24 6 3.5669 -5.9673 -2.3258 25 6 3.9525 -5.0394 0.0018 26 7 2.1554 -1.1439 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6486 2.1398 -0.0008 31 1 4.1320 2.1270 0.0010 32 1 5.3126 -0.0611 0.0121 33 1 1.5048 -2.8771 -0.3873 34 1 1.6079 -3.9936 1.0074 35 1 1.4727 -4.6300 -1.9454 36 1 0.8626 -5.5781 -0.5551 37 1 1.7871 -7.6072 -0.7787 38 1 2.8064 -7.2817 0.6631 39 1 4.8278 -7.8826 -0.4844 40 1 3.6743 -9.0388 -1.2147 41 1 6.2327 -10.6328 -4.2794 42 1 2.7821 -5.8363 -3.0709 43 1 4.3643 -5.2433 -2.4935 44 1 3.9203 -5.4563 1.0084 45 1 4.9668 -5.0777 -0.3954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041071641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:28 Heat of formation + Delta-G solvation = 47.168306 kcal Electronic energy + Delta-G solvation = -26618.567060 eV Core-core repulsion = 23023.296940 eV Total energy + Delta-G solvation = -3595.270119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99501 -39.84585 -38.29195 -35.88212 -33.36377 -33.13220 -32.37794 -30.85547 -29.37698 -28.47606 -28.08731 -26.47956 -24.75886 -23.58216 -22.52142 -22.20466 -20.82997 -19.98006 -18.89602 -17.54521 -16.88588 -16.67092 -16.12363 -15.80027 -15.63746 -15.12802 -14.79855 -14.68758 -14.45545 -13.90704 -13.62913 -13.46899 -13.42477 -13.14926 -12.74036 -12.61837 -12.58690 -12.27251 -12.11947 -11.93637 -11.74956 -11.56305 -11.45029 -10.94869 -10.88668 -10.52566 -10.33933 -10.28118 -10.16722 -9.94217 -9.84596 -9.45483 -9.33361 -9.32485 -8.64695 -8.57119 -6.97544 -5.88693 -3.18096 0.38022 0.85758 2.62362 2.86256 3.39319 3.53854 3.57453 3.59733 3.73599 4.27729 4.39412 4.61042 4.61993 4.72889 4.74632 4.81762 4.91361 4.99683 5.09958 5.15960 5.21142 5.23491 5.37343 5.40972 5.53580 5.62006 5.62375 5.68490 5.76458 5.83463 5.88448 5.91310 5.99410 6.08700 6.17362 6.20124 6.30518 6.39808 6.49324 6.60561 6.71463 6.73052 6.83918 7.40421 7.59044 7.76602 8.11604 8.36918 8.89358 9.75112 10.24753 11.27693 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.003318 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.727799 B = 8435.700122 C = 8863.780995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.123 3.877 3 C -0.154 4.154 4 C -0.077 4.077 5 C -0.119 4.119 6 C 0.096 3.904 7 C 0.585 3.415 8 O -0.534 6.534 9 N -0.599 5.599 10 C 0.089 3.911 11 C -0.120 4.120 12 C -0.086 4.086 13 C -0.116 4.116 14 C 0.109 3.891 15 N -0.610 5.610 16 C -0.239 4.239 17 H 0.091 0.909 18 C 0.021 3.979 19 N -0.911 5.911 20 Si 0.882 3.118 21 H -0.285 1.285 22 H -0.303 1.303 23 H -0.276 1.276 24 C 0.151 3.849 25 C 0.120 3.880 26 N -0.454 5.454 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.120 0.880 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.059 0.941 41 H 0.262 0.738 42 H 0.036 0.964 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 22.516 12.729 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.017 4.017 3 C -0.174 4.174 4 C -0.102 4.102 5 C -0.140 4.140 6 C -0.042 4.042 7 C 0.372 3.628 8 O -0.411 6.411 9 N -0.331 5.331 10 C -0.034 4.034 11 C -0.159 4.159 12 C -0.088 4.088 13 C -0.155 4.155 14 C -0.016 4.016 15 N -0.337 5.337 16 C -0.366 4.366 17 H 0.109 0.891 18 C -0.177 4.177 19 N -0.555 5.555 20 Si 0.712 3.288 21 H -0.212 1.212 22 H -0.231 1.231 23 H -0.202 1.202 24 C 0.026 3.974 25 C -0.002 4.002 26 N -0.166 5.166 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.541 21.599 12.569 27.960 hybrid contribution 1.146 0.459 0.885 1.519 sum -11.395 22.058 13.453 28.238 Atomic orbital electron populations 1.20752 0.88198 1.03887 1.03349 1.21439 0.97312 0.88116 0.94849 1.22176 0.95025 0.99429 1.00747 1.21632 0.94445 0.98282 0.95877 1.22126 1.02445 0.91701 0.97747 1.21127 0.89572 0.93990 0.99515 1.17440 0.85868 0.82131 0.77384 1.90815 1.12733 1.86398 1.51150 1.48858 1.08597 1.05301 1.70312 1.23037 0.79743 1.00884 0.99694 1.22515 0.96881 0.95964 1.00518 1.21617 0.94852 0.95277 0.97011 1.22707 0.99890 0.93629 0.99243 1.22025 0.94713 0.97238 0.87615 1.44959 1.70500 1.09049 1.09145 1.18638 1.23388 1.09097 0.85441 0.89129 1.24980 0.99136 0.96918 0.96695 1.69840 1.40993 1.13587 1.31057 0.86990 0.79211 0.77538 0.85036 1.21220 1.23105 1.20185 1.21330 0.96208 0.87773 0.92118 1.22391 0.99408 0.79111 0.99258 1.67538 1.08561 1.28974 1.11574 0.90162 0.90511 0.90059 0.84337 0.83994 0.83351 0.86286 0.91711 0.90671 0.90179 0.90597 0.91382 0.95819 0.92315 0.92777 0.94595 0.95138 0.90936 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 10.17 36.00 0.37 -0.18 16 2 C 0.12 1.03 6.78 -82.60 -0.56 0.47 16 3 C -0.15 -1.06 9.75 -39.32 -0.38 -1.44 16 4 C -0.08 -0.58 10.17 -39.31 -0.40 -0.98 16 5 C -0.12 -1.29 9.63 -39.05 -0.38 -1.66 16 6 C 0.10 1.25 6.73 -83.01 -0.56 0.69 16 7 C 0.58 9.44 7.90 -12.18 -0.10 9.35 16 8 O -0.53 -10.30 16.60 5.35 0.09 -10.21 16 9 N -0.60 -9.08 3.33 -170.51 -0.57 -9.65 16 10 C 0.09 1.07 6.54 -2.17 -0.01 1.05 16 11 C -0.12 -1.52 6.31 -25.81 -0.16 -1.68 16 12 C -0.09 -1.40 0.79 -153.92 -0.12 -1.52 16 13 C -0.12 -1.90 5.90 -25.13 -0.15 -2.05 16 14 C 0.11 2.41 4.62 -2.34 -0.01 2.39 16 15 N -0.61 -15.22 3.23 -170.15 -0.55 -15.77 16 16 C -0.24 -7.00 10.59 -15.06 -0.16 -7.16 16 17 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 18 C 0.02 0.63 5.43 -17.43 -0.09 0.53 16 19 N -0.91 -28.82 13.97 55.49 0.78 -28.05 16 20 Si 0.88 23.37 24.27 -169.99 -4.13 19.24 16 21 H -0.29 -7.18 6.49 56.52 0.37 -6.81 16 22 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 23 H -0.28 -7.31 6.66 56.52 0.38 -6.93 16 24 C 0.15 3.13 6.37 -3.42 -0.02 3.10 16 25 C 0.12 1.97 6.04 -2.89 -0.02 1.95 16 26 N -0.45 -5.08 6.52 -6.06 -0.04 -5.12 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 31 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 32 H 0.15 1.58 7.64 -52.49 -0.40 1.18 16 33 H 0.12 1.36 5.17 -51.93 -0.27 1.09 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.97 7.41 -51.93 -0.38 0.58 16 36 H 0.08 0.86 7.62 -51.93 -0.40 0.47 16 37 H 0.08 1.17 7.90 -51.93 -0.41 0.76 16 38 H 0.07 0.94 7.65 -51.93 -0.40 0.55 16 39 H 0.02 0.55 5.56 -51.93 -0.29 0.27 16 40 H 0.06 1.38 6.64 -51.93 -0.34 1.03 16 41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 42 H 0.04 0.73 7.48 -51.93 -0.39 0.34 16 43 H 0.03 0.68 7.63 -51.93 -0.40 0.28 16 44 H 0.07 1.08 7.59 -51.93 -0.39 0.68 16 45 H 0.09 1.73 7.41 -51.93 -0.38 1.35 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -35.45 352.58 -8.47 -43.92 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.61 Total: -2.54 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.76 Total: 2.86 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.38 Total: -58.59 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.13 Total: 19.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.45 -8.47 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041071641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.092 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds