Wall clock time and date at job start Tue Mar 31 2020 10:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38599 * 119.55123 * 2 1 4 4 C 1.38585 * 119.35097 * 179.97438 * 3 2 1 5 5 C 1.38635 * 118.48841 * 359.72911 * 4 3 2 6 6 C 1.39269 * 119.05715 * 0.52728 * 5 4 3 7 7 C 1.48174 * 119.71997 * 179.73254 * 6 5 4 8 8 O 1.21517 * 119.99985 * 359.73443 * 7 6 5 9 9 N 1.34775 * 119.99505 * 179.72831 * 7 6 5 10 10 C 1.48257 * 127.74072 * 359.97438 * 9 7 6 11 11 C 1.54714 * 104.66743 * 141.18636 * 10 9 7 12 12 C 1.53039 * 104.47511 * 23.66665 * 11 10 9 13 13 C 1.53893 * 111.37173 * 121.00916 * 12 11 10 14 14 C 1.55146 * 101.45103 * 154.99728 * 13 12 11 15 15 N 1.47543 * 105.06674 * 324.20824 * 14 13 12 16 16 C 1.36933 * 125.67013 * 203.97358 * 15 14 13 17 17 H 1.08000 * 119.99705 * 161.53429 * 16 15 14 18 18 C 1.38811 * 120.00238 * 341.53655 * 16 15 14 19 19 N 1.31611 * 120.00415 * 157.55885 * 18 16 15 20 20 Si 1.86803 * 119.99737 * 337.55880 * 18 16 15 21 21 H 1.48508 * 109.47049 * 84.53375 * 20 18 16 22 22 H 1.48504 * 109.47265 * 204.53539 * 20 18 16 23 23 H 1.48498 * 109.47123 * 324.53731 * 20 18 16 24 24 C 1.47593 * 108.51939 * 23.93693 * 15 14 13 25 25 C 1.48451 * 127.72831 * 179.97438 * 9 7 6 26 26 N 1.31495 * 119.54647 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47132 * 270.02991 * 1 2 3 28 28 H 1.09006 * 109.46858 * 30.02245 * 1 2 3 29 29 H 1.09000 * 109.47466 * 150.01958 * 1 2 3 30 30 H 1.07998 * 120.32724 * 359.94905 * 3 2 1 31 31 H 1.08005 * 120.75748 * 180.02562 * 4 3 2 32 32 H 1.07996 * 120.47199 * 180.28689 * 5 4 3 33 33 H 1.08998 * 110.39351 * 22.38910 * 10 9 7 34 34 H 1.08994 * 110.49303 * 260.03321 * 10 9 7 35 35 H 1.08999 * 110.43221 * 264.92106 * 11 10 9 36 36 H 1.09002 * 110.53972 * 142.46702 * 11 10 9 37 37 H 1.09000 * 111.02605 * 36.95132 * 13 12 11 38 38 H 1.08993 * 111.06101 * 273.05505 * 13 12 11 39 39 H 1.08997 * 110.33531 * 83.13663 * 14 13 12 40 40 H 1.08997 * 110.33394 * 205.28000 * 14 13 12 41 41 H 0.97001 * 120.00285 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.94871 * 238.65719 * 24 15 14 43 43 H 1.08997 * 109.96501 * 117.41540 * 24 15 14 44 44 H 1.08999 * 110.46457 * 99.70655 * 25 9 7 45 45 H 1.09000 * 110.46578 * 337.11366 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2008 0.0005 5 6 4.2334 -0.0199 0.0068 6 6 3.4820 -1.1925 0.0011 7 6 4.1691 -2.5053 0.0017 8 8 5.3832 -2.5556 0.0023 9 7 3.4474 -3.6435 0.0018 10 6 1.9713 -3.7821 0.0018 11 6 1.6902 -4.9798 -0.9362 12 6 2.9878 -5.7911 -0.9201 13 6 2.7451 -7.2274 -0.4237 14 6 3.9251 -7.9859 -1.0866 15 7 4.1077 -7.3386 -2.3998 16 6 4.6818 -7.9151 -3.5012 17 1 4.5110 -7.4951 -4.4814 18 6 5.4833 -9.0394 -3.3579 19 7 5.6730 -9.8470 -4.3797 20 14 6.2926 -9.4061 -1.7147 21 1 5.3375 -10.1391 -0.8452 22 1 7.5023 -10.2392 -1.9337 23 1 6.6812 -8.1317 -1.0590 24 6 3.5669 -5.9673 -2.3258 25 6 3.9525 -5.0394 0.0018 26 7 2.1554 -1.1439 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6486 2.1398 -0.0008 31 1 4.1320 2.1270 0.0010 32 1 5.3126 -0.0611 0.0121 33 1 1.5048 -2.8771 -0.3873 34 1 1.6079 -3.9936 1.0074 35 1 1.4727 -4.6300 -1.9454 36 1 0.8626 -5.5781 -0.5551 37 1 1.7871 -7.6072 -0.7787 38 1 2.8064 -7.2817 0.6631 39 1 4.8278 -7.8826 -0.4844 40 1 3.6743 -9.0388 -1.2147 41 1 6.2327 -10.6328 -4.2794 42 1 2.7821 -5.8363 -3.0709 43 1 4.3643 -5.2433 -2.4935 44 1 3.9203 -5.4563 1.0084 45 1 4.9668 -5.0777 -0.3954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041071641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:27 Heat of formation + Delta-G solvation = 22.775676 kcal Electronic energy + Delta-G solvation = -26619.624803 eV Core-core repulsion = 23023.296940 eV Total energy + Delta-G solvation = -3596.327863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93367 -40.95939 -39.57302 -37.39896 -34.69943 -33.98492 -33.61894 -32.44991 -30.84854 -29.85927 -28.74274 -27.88808 -26.24608 -24.72213 -23.52927 -23.09880 -22.73192 -20.98614 -20.29331 -18.97045 -18.40611 -17.59763 -17.19886 -16.97224 -16.81685 -16.70466 -16.31379 -15.64353 -15.36472 -15.27744 -15.11292 -14.78487 -14.63810 -14.18648 -13.97357 -13.84734 -13.58361 -13.25040 -13.20672 -13.08778 -13.05049 -12.96890 -12.80521 -12.65416 -12.34596 -12.29603 -11.82539 -11.69727 -11.49638 -11.43544 -11.25079 -10.93491 -10.82385 -10.27218 -10.07184 -9.71754 -9.09299 -8.22560 -5.48448 -0.39899 0.21739 1.24297 1.35177 1.43878 1.62369 1.77938 2.36629 2.78600 2.93446 3.00489 3.26545 3.43340 3.55823 3.66664 3.71191 3.86067 4.00063 4.06964 4.08561 4.27451 4.30377 4.39530 4.42842 4.55120 4.59214 4.66804 4.77603 4.79153 4.81141 4.81257 4.90213 4.97642 5.04174 5.07302 5.11684 5.13345 5.18180 5.21216 5.26858 5.35171 5.46088 5.62525 5.71684 6.05254 6.42198 6.67137 6.71657 6.99554 7.49120 8.06660 8.97707 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.003318 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.727799 B = 8435.700122 C = 8863.780995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.113 3.887 3 C -0.137 4.137 4 C -0.072 4.072 5 C -0.134 4.134 6 C 0.066 3.934 7 C 0.574 3.426 8 O -0.585 6.585 9 N -0.603 5.603 10 C 0.094 3.906 11 C -0.110 4.110 12 C -0.076 4.076 13 C -0.098 4.098 14 C 0.098 3.902 15 N -0.628 5.628 16 C -0.237 4.237 17 H 0.055 0.945 18 C -0.035 4.035 19 N -0.955 5.955 20 Si 0.946 3.054 21 H -0.259 1.259 22 H -0.306 1.306 23 H -0.281 1.281 24 C 0.149 3.851 25 C 0.120 3.880 26 N -0.466 5.466 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.180 0.820 31 H 0.175 0.825 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.016 0.984 40 H 0.045 0.955 41 H 0.264 0.736 42 H 0.038 0.962 43 H 0.002 0.998 44 H 0.096 0.904 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 24.881 15.594 33.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.027 4.027 3 C -0.157 4.157 4 C -0.097 4.097 5 C -0.155 4.155 6 C -0.071 4.071 7 C 0.363 3.637 8 O -0.466 6.466 9 N -0.333 5.333 10 C -0.027 4.027 11 C -0.149 4.149 12 C -0.077 4.077 13 C -0.136 4.136 14 C -0.027 4.027 15 N -0.355 5.355 16 C -0.366 4.366 17 H 0.073 0.927 18 C -0.229 4.229 19 N -0.602 5.602 20 Si 0.775 3.225 21 H -0.184 1.184 22 H -0.235 1.235 23 H -0.207 1.207 24 C 0.025 3.975 25 C -0.003 4.003 26 N -0.179 5.179 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.198 0.802 31 H 0.193 0.807 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.114 0.886 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.053 23.976 15.465 32.737 hybrid contribution 2.154 -0.109 -0.104 2.159 sum -13.899 23.867 15.360 31.603 Atomic orbital electron populations 1.20862 0.85676 1.04913 1.04449 1.22121 0.98920 0.87903 0.93798 1.22673 0.94719 1.00559 0.97738 1.22018 0.95212 0.98023 0.94474 1.22203 1.02100 0.92657 0.98567 1.20720 0.90679 0.92630 1.03036 1.18107 0.85622 0.83574 0.76400 1.90764 1.14918 1.87326 1.53552 1.49008 1.10050 1.04511 1.69731 1.23219 0.77599 1.00983 1.00909 1.22527 0.95568 0.95858 1.00914 1.21512 0.96406 0.96246 0.93537 1.22713 0.97991 0.91792 1.01111 1.22191 0.96973 0.97200 0.86318 1.45108 1.70106 1.11082 1.09212 1.18589 1.23278 1.08798 0.85915 0.92671 1.25600 0.99975 0.97100 1.00255 1.69954 1.42368 1.14524 1.33392 0.85953 0.78264 0.77136 0.81190 1.18404 1.23464 1.20740 1.21459 0.95277 0.85077 0.95724 1.22308 0.97260 0.80572 1.00150 1.67413 1.07482 1.30715 1.12315 0.88867 0.88077 0.90501 0.80248 0.80740 0.84609 0.85488 0.89294 0.91048 0.86713 0.88604 0.87482 0.96628 0.93688 0.92751 0.94358 0.97986 0.88590 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 10.17 71.24 0.72 0.08 16 2 C 0.11 1.53 6.78 42.69 0.29 1.82 16 3 C -0.14 -1.33 9.75 22.44 0.22 -1.11 16 4 C -0.07 -0.90 10.17 22.45 0.23 -0.67 16 5 C -0.13 -2.88 9.63 22.61 0.22 -2.66 16 6 C 0.07 1.71 6.73 41.90 0.28 1.99 16 7 C 0.57 19.29 7.90 86.88 0.69 19.98 16 8 O -0.58 -24.30 16.60 -3.77 -0.06 -24.36 16 9 N -0.60 -18.10 3.33 -811.65 -2.70 -20.80 16 10 C 0.09 2.00 6.54 86.63 0.57 2.56 16 11 C -0.11 -2.43 6.31 31.19 0.20 -2.24 16 12 C -0.08 -2.33 0.79 -51.80 -0.04 -2.37 16 13 C -0.10 -2.88 5.90 31.63 0.19 -2.70 16 14 C 0.10 4.20 4.62 86.92 0.40 4.60 16 15 N -0.63 -32.12 3.23 -692.24 -2.23 -34.35 16 16 C -0.24 -14.56 10.59 84.03 0.89 -13.67 16 17 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 18 C -0.03 -2.16 5.43 84.86 0.46 -1.70 16 19 N -0.96 -62.76 13.97 21.65 0.30 -62.45 16 20 Si 0.95 49.64 24.27 68.60 1.66 51.31 16 21 H -0.26 -12.37 6.49 99.48 0.65 -11.73 16 22 H -0.31 -16.11 7.11 99.48 0.71 -15.41 16 23 H -0.28 -14.83 6.66 99.48 0.66 -14.17 16 24 C 0.15 6.34 6.37 86.19 0.55 6.89 16 25 C 0.12 3.89 6.04 86.05 0.52 4.41 16 26 N -0.47 -9.62 6.52 -173.08 -1.13 -10.74 16 27 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.10 0.16 8.08 -2.38 -0.02 0.15 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 31 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 32 H 0.14 3.13 7.64 -2.91 -0.02 3.10 16 33 H 0.13 2.58 5.17 -2.39 -0.01 2.57 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.67 7.41 -2.39 -0.02 1.65 16 36 H 0.11 1.83 7.62 -2.39 -0.02 1.81 16 37 H 0.10 2.51 7.90 -2.39 -0.02 2.49 16 38 H 0.11 2.41 7.65 -2.39 -0.02 2.39 16 39 H 0.02 0.72 5.56 -2.39 -0.01 0.71 16 40 H 0.04 2.05 6.64 -2.39 -0.02 2.04 16 41 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 42 H 0.04 1.60 7.48 -2.39 -0.02 1.58 16 43 H 0.00 0.10 7.63 -2.39 -0.02 0.08 16 44 H 0.10 2.65 7.59 -2.39 -0.02 2.63 16 45 H 0.04 1.84 7.41 -2.39 -0.02 1.82 16 Total: -1.00 -84.72 352.58 3.10 -81.62 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.89 Total: 4.57 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 6.38 Total: 15.22 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -5.76 Total: -128.36 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.66 Total: 51.31 kcal Total: -84.72 3.10 -81.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041071641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.393 kcal (2) G-P(sol) polarization free energy of solvation -84.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds