Wall clock time and date at job start Tue Mar 31 2020 10:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31700 * 119.71983 * 2 1 4 4 C 1.31925 * 121.87622 * 180.26568 * 3 2 1 5 5 C 1.38349 * 121.08312 * 359.75326 * 4 3 2 6 6 C 1.38359 * 119.30427 * 359.97161 * 5 4 3 7 7 C 1.39523 * 119.71536 * 179.73095 * 2 1 3 8 8 C 1.47834 * 120.56001 * 359.97438 * 7 2 1 9 9 O 1.21550 * 120.00308 * 322.31109 * 8 7 2 10 10 N 1.34778 * 120.00145 * 142.30679 * 8 7 2 11 11 C 1.47556 * 125.67646 * 354.85185 * 10 8 7 12 12 C 1.55179 * 105.00936 * 203.86195 * 11 10 8 13 13 C 1.53721 * 101.43744 * 324.52369 * 12 11 10 14 14 C 1.53662 * 111.40264 * 272.72341 * 13 12 11 15 15 C 1.55177 * 101.41878 * 272.69622 * 14 13 12 16 16 N 1.47562 * 105.01043 * 324.50686 * 15 14 13 17 17 C 1.36938 * 125.67736 * 203.85737 * 16 15 14 18 18 H 1.08000 * 119.99984 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99910 * 359.97438 * 17 16 15 20 20 N 1.31623 * 119.99973 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47066 * 90.00221 * 21 19 17 23 23 H 1.48498 * 109.47390 * 210.00331 * 21 19 17 24 24 H 1.48498 * 109.47262 * 330.00643 * 21 19 17 25 25 C 1.47407 * 108.64939 * 23.85818 * 16 15 14 26 26 C 1.47411 * 125.67423 * 174.85558 * 10 8 7 27 27 H 1.09001 * 109.47472 * 264.72512 * 1 2 3 28 28 H 1.09004 * 109.47210 * 24.72297 * 1 2 3 29 29 H 1.09004 * 109.47291 * 144.72578 * 1 2 3 30 30 H 1.08006 * 119.45315 * 179.72413 * 4 3 2 31 31 H 1.08001 * 120.34922 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.85070 * 179.97438 * 6 5 4 33 33 H 1.09004 * 110.33629 * 322.74701 * 11 10 8 34 34 H 1.08998 * 110.33573 * 84.87254 * 11 10 8 35 35 H 1.08999 * 111.03510 * 82.53875 * 12 11 10 36 36 H 1.09008 * 111.03655 * 206.42776 * 12 11 10 37 37 H 1.08995 * 111.03908 * 30.73745 * 14 13 12 38 38 H 1.09009 * 111.03045 * 154.66566 * 14 13 12 39 39 H 1.09001 * 110.33733 * 205.62061 * 15 14 13 40 40 H 1.08998 * 110.42276 * 83.43614 * 15 14 13 41 41 H 0.96999 * 119.99689 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.99035 * 238.54474 * 25 16 15 43 43 H 1.09003 * 109.98761 * 117.23532 * 25 16 15 44 44 H 1.08996 * 109.98313 * 297.24335 * 26 10 8 45 45 H 1.09007 * 109.98260 * 58.51104 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4782 1.1934 -0.0052 5 6 4.2365 0.0363 -0.0058 6 6 3.5986 -1.1915 -0.0003 7 6 2.1985 -1.2117 0.0057 8 6 1.4655 -2.4955 0.0123 9 8 0.4410 -2.6072 0.6568 10 7 1.9332 -3.5422 -0.6964 11 6 3.0973 -3.5166 -1.6028 12 6 2.8605 -4.6866 -2.5943 13 6 2.1910 -5.7277 -1.6828 14 6 3.2341 -6.6022 -0.9697 15 6 3.4574 -7.7276 -2.0145 16 7 2.1350 -7.9433 -2.6326 17 6 1.7196 -9.0932 -3.2494 18 1 0.7275 -9.1511 -3.6720 19 6 2.5739 -10.1842 -3.3314 20 7 3.7829 -10.1137 -2.8159 21 14 2.0071 -11.7530 -4.1722 22 1 2.3487 -11.6919 -5.6161 23 1 2.6850 -12.9197 -3.5521 24 1 0.5371 -11.8945 -4.0169 25 6 1.3353 -6.7150 -2.4755 26 6 1.3667 -4.9032 -0.6951 27 1 -0.3634 -0.0945 1.0233 28 1 -0.3634 0.9335 -0.4298 29 1 -0.3634 -0.8390 -0.5935 30 1 3.9734 2.1532 -0.0095 31 1 5.3151 0.0907 -0.0105 32 1 4.1660 -2.1104 -0.0010 33 1 3.1391 -2.5684 -2.1388 34 1 4.0181 -3.6743 -1.0412 35 1 2.1922 -4.3864 -3.4013 36 1 3.8046 -5.0613 -2.9900 37 1 4.1543 -6.0462 -0.7908 38 1 2.8355 -7.0060 -0.0389 39 1 3.7989 -8.6386 -1.5229 40 1 4.1798 -7.4104 -2.7666 41 1 4.3799 -10.8760 -2.8736 42 1 0.4179 -6.9348 -1.9295 43 1 1.0961 -6.2985 -3.4540 44 1 1.4389 -5.3357 0.3027 45 1 0.3246 -4.8732 -1.0135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041611290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:45 Heat of formation + Delta-G solvation = 36.200136 kcal Electronic energy + Delta-G solvation = -26456.764838 eV Core-core repulsion = 22861.019103 eV Total energy + Delta-G solvation = -3595.745735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.08564 -39.86148 -38.29941 -35.82633 -33.46550 -32.94934 -32.36644 -30.45404 -29.26423 -28.73505 -27.93950 -25.88731 -24.75257 -23.38570 -22.93795 -22.28482 -20.30649 -19.87749 -18.92178 -17.36866 -17.02507 -16.84942 -16.39263 -16.19430 -15.47131 -14.96687 -14.69706 -14.31228 -14.15943 -13.86398 -13.62236 -13.55368 -13.15389 -12.80542 -12.77908 -12.65924 -12.54451 -12.28527 -12.25937 -11.90728 -11.58174 -11.37415 -11.16329 -10.97483 -10.80252 -10.34653 -10.23510 -10.14821 -10.07292 -10.02474 -9.79107 -9.69733 -9.53242 -9.27536 -8.69841 -8.64463 -6.87230 -5.68924 -3.10206 0.45696 0.88170 2.60751 2.84402 3.38009 3.43439 3.45130 3.47945 3.95731 4.23269 4.40445 4.45955 4.46885 4.62285 4.71330 4.81657 4.92864 5.12305 5.21145 5.23782 5.28862 5.39654 5.42709 5.47990 5.53253 5.69826 5.73598 5.78807 5.80467 5.89389 5.91881 5.97124 6.06365 6.17054 6.18669 6.28831 6.32002 6.50083 6.54589 6.70190 6.78424 7.39863 7.45170 7.59100 7.61247 7.81278 8.00944 8.31781 9.18520 9.79035 10.43751 11.35195 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.033330 B = 0.002788 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.885890 B =10041.277896 C =10497.666776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.182 3.818 3 N -0.490 5.490 4 C 0.122 3.878 5 C -0.187 4.187 6 C -0.041 4.041 7 C -0.179 4.179 8 C 0.576 3.424 9 O -0.530 6.530 10 N -0.609 5.609 11 C 0.097 3.903 12 C -0.113 4.113 13 C -0.082 4.082 14 C -0.131 4.131 15 C 0.155 3.845 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.152 3.848 26 C 0.126 3.874 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.072 0.928 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 20.360 4.725 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.043 3.957 3 N -0.199 5.199 4 C -0.036 4.036 5 C -0.207 4.207 6 C -0.067 4.067 7 C -0.184 4.184 8 C 0.364 3.636 9 O -0.408 6.408 10 N -0.342 5.342 11 C -0.025 4.025 12 C -0.151 4.151 13 C -0.083 4.083 14 C -0.170 4.170 15 C 0.030 3.970 16 N -0.330 5.330 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.026 3.974 26 C 0.004 3.996 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.177 0.823 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.188 20.904 5.065 21.542 hybrid contribution 0.531 -1.563 -0.503 1.726 sum 1.720 19.341 4.562 19.946 Atomic orbital electron populations 1.20800 0.87798 1.03261 1.04161 1.21441 0.97421 0.86599 0.90194 1.67636 1.10048 1.28521 1.13694 1.22970 0.89397 0.98792 0.92405 1.22099 1.01851 0.92992 1.03719 1.21956 0.93091 0.99310 0.92385 1.20774 0.94641 0.94802 1.08217 1.17660 0.84219 0.82335 0.79396 1.90794 1.23709 1.83198 1.43094 1.48568 1.31113 1.10277 1.44226 1.22615 0.88482 0.99959 0.91485 1.22657 1.02326 0.93506 0.96631 1.21558 0.96774 0.94723 0.95212 1.22918 0.96589 0.97944 0.99550 1.21969 0.86796 0.96464 0.91783 1.44598 1.11867 1.09631 1.66867 1.19078 0.98433 0.88914 1.28569 0.90481 1.24776 0.96152 0.98396 1.01336 1.69796 1.06993 1.30191 1.50177 0.86074 0.77736 0.82812 0.78891 1.21655 1.21660 1.20690 1.21047 0.93416 0.87043 0.95942 1.21906 0.97822 0.79890 1.00000 0.89343 0.90657 0.90129 0.82259 0.84064 0.83909 0.90875 0.91137 0.90552 0.89109 0.92257 0.91858 0.87719 0.96954 0.93748 0.95475 0.95629 0.90975 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 8.83 36.00 0.32 -0.83 16 2 C 0.18 2.19 6.82 -82.17 -0.56 1.63 16 3 N -0.49 -5.53 10.26 -9.14 -0.09 -5.62 16 4 C 0.12 1.03 11.17 -17.47 -0.20 0.83 16 5 C -0.19 -1.41 10.10 -39.50 -0.40 -1.81 16 6 C -0.04 -0.39 8.34 -38.87 -0.32 -0.71 16 7 C -0.18 -2.15 5.39 -104.82 -0.57 -2.71 16 8 C 0.58 8.16 6.90 -12.33 -0.09 8.07 16 9 O -0.53 -8.98 15.34 5.32 0.08 -8.90 16 10 N -0.61 -8.11 3.34 -171.97 -0.57 -8.69 16 11 C 0.10 1.07 5.14 -2.31 -0.01 1.06 16 12 C -0.11 -1.51 5.89 -25.20 -0.15 -1.66 16 13 C -0.08 -1.30 0.62 -153.99 -0.10 -1.39 16 14 C -0.13 -2.29 5.89 -25.24 -0.15 -2.44 16 15 C 0.15 3.54 5.77 -2.31 -0.01 3.52 16 16 N -0.60 -14.84 3.41 -170.41 -0.58 -15.42 16 17 C -0.22 -6.04 10.28 -15.06 -0.15 -6.19 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -26.25 10.10 55.49 0.56 -25.69 16 21 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.15 3.01 6.42 -3.64 -0.02 2.98 16 26 C 0.13 1.87 6.05 -3.64 -0.02 1.85 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.96 6.78 -51.93 -0.35 0.61 16 30 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.14 1.14 5.94 -52.49 -0.31 0.83 16 33 H 0.07 0.71 7.32 -51.93 -0.38 0.33 16 34 H 0.07 0.68 6.91 -51.93 -0.36 0.32 16 35 H 0.08 1.01 7.80 -51.93 -0.40 0.60 16 36 H 0.09 1.24 7.89 -51.92 -0.41 0.83 16 37 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 38 H 0.06 1.12 7.79 -51.92 -0.40 0.72 16 39 H 0.11 2.75 5.89 -51.93 -0.31 2.45 16 40 H 0.01 0.30 8.10 -51.93 -0.42 -0.12 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.03 0.55 7.78 -51.93 -0.40 0.14 16 43 H 0.03 0.51 7.61 -51.93 -0.40 0.11 16 44 H 0.07 1.11 7.61 -51.93 -0.40 0.71 16 45 H 0.07 1.10 7.78 -51.93 -0.40 0.70 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -31.78 354.04 -9.41 -41.19 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.59 Total: -0.72 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.52 Total: 1.79 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.69 Total: -55.42 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.78 -9.41 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041611290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.393 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds