Wall clock time and date at job start Tue Mar 31 2020 10:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31700 * 119.71983 * 2 1 4 4 C 1.31925 * 121.87622 * 180.26568 * 3 2 1 5 5 C 1.38349 * 121.08312 * 359.75326 * 4 3 2 6 6 C 1.38359 * 119.30427 * 359.97161 * 5 4 3 7 7 C 1.39523 * 119.71536 * 179.73095 * 2 1 3 8 8 C 1.47834 * 120.56001 * 359.97438 * 7 2 1 9 9 O 1.21550 * 120.00308 * 322.31109 * 8 7 2 10 10 N 1.34778 * 120.00145 * 142.30679 * 8 7 2 11 11 C 1.47556 * 125.67646 * 354.85185 * 10 8 7 12 12 C 1.55179 * 105.00936 * 203.86195 * 11 10 8 13 13 C 1.53721 * 101.43744 * 324.52369 * 12 11 10 14 14 C 1.53662 * 111.40264 * 272.72341 * 13 12 11 15 15 C 1.55177 * 101.41878 * 272.69622 * 14 13 12 16 16 N 1.47562 * 105.01043 * 324.50686 * 15 14 13 17 17 C 1.36938 * 125.67736 * 203.85737 * 16 15 14 18 18 H 1.08000 * 119.99984 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99910 * 359.97438 * 17 16 15 20 20 N 1.31623 * 119.99973 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47066 * 90.00221 * 21 19 17 23 23 H 1.48498 * 109.47390 * 210.00331 * 21 19 17 24 24 H 1.48498 * 109.47262 * 330.00643 * 21 19 17 25 25 C 1.47407 * 108.64939 * 23.85818 * 16 15 14 26 26 C 1.47411 * 125.67423 * 174.85558 * 10 8 7 27 27 H 1.09001 * 109.47472 * 264.72512 * 1 2 3 28 28 H 1.09004 * 109.47210 * 24.72297 * 1 2 3 29 29 H 1.09004 * 109.47291 * 144.72578 * 1 2 3 30 30 H 1.08006 * 119.45315 * 179.72413 * 4 3 2 31 31 H 1.08001 * 120.34922 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.85070 * 179.97438 * 6 5 4 33 33 H 1.09004 * 110.33629 * 322.74701 * 11 10 8 34 34 H 1.08998 * 110.33573 * 84.87254 * 11 10 8 35 35 H 1.08999 * 111.03510 * 82.53875 * 12 11 10 36 36 H 1.09008 * 111.03655 * 206.42776 * 12 11 10 37 37 H 1.08995 * 111.03908 * 30.73745 * 14 13 12 38 38 H 1.09009 * 111.03045 * 154.66566 * 14 13 12 39 39 H 1.09001 * 110.33733 * 205.62061 * 15 14 13 40 40 H 1.08998 * 110.42276 * 83.43614 * 15 14 13 41 41 H 0.96999 * 119.99689 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.99035 * 238.54474 * 25 16 15 43 43 H 1.09003 * 109.98761 * 117.23532 * 25 16 15 44 44 H 1.08996 * 109.98313 * 297.24335 * 26 10 8 45 45 H 1.09007 * 109.98260 * 58.51104 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4782 1.1934 -0.0052 5 6 4.2365 0.0363 -0.0058 6 6 3.5986 -1.1915 -0.0003 7 6 2.1985 -1.2117 0.0057 8 6 1.4655 -2.4955 0.0123 9 8 0.4410 -2.6072 0.6568 10 7 1.9332 -3.5422 -0.6964 11 6 3.0973 -3.5166 -1.6028 12 6 2.8605 -4.6866 -2.5943 13 6 2.1910 -5.7277 -1.6828 14 6 3.2341 -6.6022 -0.9697 15 6 3.4574 -7.7276 -2.0145 16 7 2.1350 -7.9433 -2.6326 17 6 1.7196 -9.0932 -3.2494 18 1 0.7275 -9.1511 -3.6720 19 6 2.5739 -10.1842 -3.3314 20 7 3.7829 -10.1137 -2.8159 21 14 2.0071 -11.7530 -4.1722 22 1 2.3487 -11.6919 -5.6161 23 1 2.6850 -12.9197 -3.5521 24 1 0.5371 -11.8945 -4.0169 25 6 1.3353 -6.7150 -2.4755 26 6 1.3667 -4.9032 -0.6951 27 1 -0.3634 -0.0945 1.0233 28 1 -0.3634 0.9335 -0.4298 29 1 -0.3634 -0.8390 -0.5935 30 1 3.9734 2.1532 -0.0095 31 1 5.3151 0.0907 -0.0105 32 1 4.1660 -2.1104 -0.0010 33 1 3.1391 -2.5684 -2.1388 34 1 4.0181 -3.6743 -1.0412 35 1 2.1922 -4.3864 -3.4013 36 1 3.8046 -5.0613 -2.9900 37 1 4.1543 -6.0462 -0.7908 38 1 2.8355 -7.0060 -0.0389 39 1 3.7989 -8.6386 -1.5229 40 1 4.1798 -7.4104 -2.7666 41 1 4.3799 -10.8760 -2.8736 42 1 0.4179 -6.9348 -1.9295 43 1 1.0961 -6.2985 -3.4540 44 1 1.4389 -5.3357 0.3027 45 1 0.3246 -4.8732 -1.0135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041611290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:45 Heat of formation + Delta-G solvation = 16.788620 kcal Electronic energy + Delta-G solvation = -26457.606584 eV Core-core repulsion = 22861.019103 eV Total energy + Delta-G solvation = -3596.587481 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01777 -40.92274 -39.49331 -37.27766 -34.71289 -33.93424 -33.49198 -31.95498 -30.56403 -30.22936 -28.84072 -27.38872 -25.98840 -24.74216 -23.92942 -23.11456 -22.10222 -20.85105 -20.24992 -18.88084 -18.25037 -17.75776 -17.33958 -17.15231 -16.77338 -16.45131 -15.97707 -15.63768 -15.38672 -14.99441 -14.77418 -14.55900 -14.32438 -14.05565 -14.01595 -13.84844 -13.60184 -13.45369 -13.14902 -13.06354 -13.01240 -12.96442 -12.67358 -12.63563 -12.42935 -12.00972 -11.80539 -11.59120 -11.43263 -11.28647 -11.16837 -10.88360 -10.72384 -10.49717 -10.03361 -9.71595 -8.86347 -7.76560 -5.19771 -0.29906 0.19487 1.47431 1.48388 1.57109 1.61508 1.81989 2.50181 2.73815 3.19214 3.30484 3.36885 3.51049 3.57902 3.65187 3.71513 3.84593 3.90497 4.06991 4.19929 4.23974 4.34786 4.46617 4.55582 4.57984 4.60635 4.66216 4.67620 4.71625 4.74974 4.84954 4.88933 5.01598 5.03430 5.05805 5.09283 5.11979 5.21055 5.27942 5.32130 5.48451 5.63885 5.68073 5.85132 6.33086 6.37394 6.89597 6.95732 7.12995 7.79528 8.43151 9.25053 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.033330 B = 0.002788 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.885890 B =10041.277896 C =10497.666776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.163 3.837 3 N -0.511 5.511 4 C 0.120 3.880 5 C -0.172 4.172 6 C -0.041 4.041 7 C -0.198 4.198 8 C 0.575 3.425 9 O -0.569 6.569 10 N -0.607 5.607 11 C 0.104 3.896 12 C -0.110 4.110 13 C -0.070 4.070 14 C -0.114 4.114 15 C 0.158 3.842 16 N -0.625 5.625 17 C -0.238 4.238 18 H 0.077 0.923 19 C -0.065 4.065 20 N -0.946 5.946 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.273 1.273 25 C 0.147 3.853 26 C 0.133 3.867 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.194 0.806 31 H 0.180 0.820 32 H 0.160 0.840 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.068 0.932 40 H -0.004 1.004 41 H 0.247 0.753 42 H 0.022 0.978 43 H 0.028 0.972 44 H 0.067 0.933 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 22.506 4.677 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.025 3.975 3 N -0.221 5.221 4 C -0.037 4.037 5 C -0.191 4.191 6 C -0.067 4.067 7 C -0.203 4.203 8 C 0.365 3.635 9 O -0.449 6.449 10 N -0.340 5.340 11 C -0.018 4.018 12 C -0.148 4.148 13 C -0.071 4.071 14 C -0.152 4.152 15 C 0.033 3.967 16 N -0.352 5.352 17 C -0.367 4.367 18 H 0.095 0.905 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.022 3.978 26 C 0.010 3.990 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.210 0.790 31 H 0.198 0.802 32 H 0.178 0.822 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.014 0.986 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.916 23.078 5.007 23.794 hybrid contribution 0.015 -2.169 -0.499 2.226 sum 2.931 20.909 4.508 21.589 Atomic orbital electron populations 1.20707 0.88327 1.03110 1.03435 1.21465 0.97547 0.87158 0.91310 1.67657 1.11729 1.28120 1.14561 1.23644 0.88556 1.00834 0.90682 1.22511 1.03653 0.91665 1.01256 1.22210 0.91849 1.00956 0.91716 1.20632 0.95852 0.93267 1.10537 1.18053 0.83805 0.83015 0.78624 1.90768 1.25511 1.83886 1.44755 1.48565 1.31647 1.09332 1.44423 1.22748 0.88347 0.99864 0.90825 1.22632 1.02028 0.93392 0.96741 1.21363 0.95909 0.94417 0.95403 1.22743 0.98472 0.96422 0.97561 1.21752 0.85895 0.96762 0.92275 1.44889 1.13060 1.10434 1.66781 1.19414 0.98546 0.90233 1.28511 0.90531 1.25559 0.96457 1.01254 1.02450 1.70043 1.07788 1.30556 1.51222 0.85101 0.77591 0.79048 0.77727 1.21344 1.21955 1.19786 1.21197 0.93520 0.86459 0.96613 1.21651 0.97231 0.80892 0.99207 0.90193 0.89620 0.91593 0.78958 0.80215 0.82217 0.88740 0.88575 0.90485 0.88973 0.88934 0.92348 0.91439 0.98557 0.94342 0.96042 0.95415 0.91471 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.24 8.83 71.23 0.63 -1.61 16 2 C 0.16 3.75 6.82 42.89 0.29 4.05 16 3 N -0.51 -10.45 10.26 -182.85 -1.88 -12.33 16 4 C 0.12 1.56 11.17 84.71 0.95 2.51 16 5 C -0.17 -1.77 10.10 22.32 0.23 -1.55 16 6 C -0.04 -0.62 8.34 22.73 0.19 -0.43 16 7 C -0.20 -4.38 5.39 -20.00 -0.11 -4.49 16 8 C 0.58 15.77 6.90 86.78 0.60 16.37 16 9 O -0.57 -19.55 15.34 -3.87 -0.06 -19.61 16 10 N -0.61 -15.10 3.34 -816.28 -2.73 -17.82 16 11 C 0.10 1.92 5.14 86.92 0.45 2.37 16 12 C -0.11 -2.68 5.89 31.58 0.19 -2.49 16 13 C -0.07 -2.15 0.62 -51.84 -0.03 -2.18 16 14 C -0.11 -3.83 5.89 31.56 0.19 -3.64 16 15 C 0.16 7.33 5.77 86.92 0.50 7.83 16 16 N -0.63 -31.35 3.41 -693.06 -2.36 -33.71 16 17 C -0.24 -13.22 10.28 84.03 0.86 -12.35 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 20 N -0.95 -55.20 10.10 21.65 0.22 -54.98 16 21 Si 0.98 45.32 29.55 68.60 2.03 47.34 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.15 5.88 6.42 86.14 0.55 6.44 16 26 C 0.13 3.84 6.05 86.14 0.52 4.37 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.65 6.78 -2.38 -0.02 1.63 16 30 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 31 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 32 H 0.16 1.77 5.94 -2.91 -0.02 1.76 16 33 H 0.09 1.44 7.32 -2.39 -0.02 1.42 16 34 H 0.10 1.36 6.91 -2.39 -0.02 1.35 16 35 H 0.08 1.88 7.80 -2.39 -0.02 1.86 16 36 H 0.09 2.27 7.89 -2.38 -0.02 2.25 16 37 H 0.09 2.52 7.88 -2.39 -0.02 2.50 16 38 H 0.06 2.03 7.79 -2.38 -0.02 2.01 16 39 H 0.07 3.67 5.89 -2.39 -0.01 3.65 16 40 H 0.00 -0.17 8.10 -2.39 -0.02 -0.19 16 41 H 0.25 14.01 8.31 -92.71 -0.77 13.23 16 42 H 0.02 0.88 7.78 -2.39 -0.02 0.86 16 43 H 0.03 1.10 7.61 -2.39 -0.02 1.08 16 44 H 0.07 2.02 7.61 -2.39 -0.02 2.00 16 45 H 0.06 1.93 7.78 -2.38 -0.02 1.91 16 Total: -1.00 -72.01 354.04 2.68 -69.33 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.99 Total: 9.75 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 6.47 Total: 12.04 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -6.75 Total: -118.84 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.06 Total: -19.61 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.01 2.68 -69.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041611290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.118 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds