Wall clock time and date at job start Tue Mar 31 2020 10:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38180 * 119.55000 * 2 1 4 4 C 1.39791 * 118.99707 * 179.97438 * 3 2 1 5 5 C 1.48152 * 120.91790 * 179.97438 * 4 3 2 6 6 O 1.21512 * 119.99994 * 24.02077 * 5 4 3 7 7 N 1.34780 * 119.99917 * 204.01054 * 5 4 3 8 8 C 1.47613 * 126.92103 * 356.53712 * 7 5 4 9 9 C 1.54348 * 107.21903 * 155.05769 * 8 7 5 10 10 C 1.53093 * 104.62628 * 2.12332 * 9 8 7 11 11 C 1.53641 * 111.77678 * 259.50082 * 10 9 8 12 12 C 1.55182 * 101.41473 * 272.05314 * 11 10 9 13 13 N 1.47562 * 105.01066 * 324.52287 * 12 11 10 14 14 C 1.36944 * 125.67401 * 203.84225 * 13 12 11 15 15 H 1.08002 * 119.99485 * 180.02562 * 14 13 12 16 16 C 1.38807 * 119.99853 * 0.02562 * 14 13 12 17 17 N 1.31616 * 120.00331 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99624 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46810 * 90.00377 * 18 16 14 20 20 H 1.48499 * 109.47319 * 209.99926 * 18 16 14 21 21 H 1.48497 * 109.47392 * 330.00490 * 18 16 14 22 22 C 1.47405 * 108.65074 * 23.86188 * 13 12 11 23 23 C 1.48690 * 127.06273 * 176.32689 * 7 5 4 24 24 C 1.39839 * 118.15813 * 0.25242 * 4 3 2 25 25 C 1.38121 * 119.00244 * 359.52470 * 24 4 3 26 26 N 1.31795 * 119.55411 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47125 * 90.00290 * 1 2 3 28 28 H 1.08998 * 109.46916 * 209.99837 * 1 2 3 29 29 H 1.09001 * 109.47443 * 330.00245 * 1 2 3 30 30 H 1.07995 * 120.49624 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.91395 * 35.61050 * 8 7 5 32 32 H 1.08994 * 109.91832 * 274.51332 * 8 7 5 33 33 H 1.09002 * 110.40156 * 120.91213 * 9 8 7 34 34 H 1.09001 * 110.40388 * 243.21939 * 9 8 7 35 35 H 1.08996 * 111.03504 * 30.08746 * 11 10 9 36 36 H 1.08996 * 111.03076 * 154.01989 * 11 10 9 37 37 H 1.09009 * 110.32964 * 205.63812 * 12 11 10 38 38 H 1.08999 * 110.42396 * 83.45528 * 12 11 10 39 39 H 0.97002 * 119.99701 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.99027 * 238.52403 * 22 13 12 41 41 H 1.09003 * 110.01945 * 117.23684 * 22 13 12 42 42 H 1.08992 * 110.53622 * 99.11974 * 23 7 5 43 43 H 1.09005 * 110.85860 * 336.09177 * 23 7 5 44 44 H 1.08006 * 120.49426 * 179.72579 * 24 4 3 45 45 H 1.08001 * 119.55197 * 180.23361 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2021 0.0000 4 6 3.5863 1.1886 0.0005 5 6 4.3598 2.4522 0.0000 6 8 3.8570 3.4725 0.4275 7 7 5.6211 2.4700 -0.4745 8 6 6.4021 1.3155 -0.9604 9 6 7.4598 1.8605 -1.9435 10 6 7.2545 3.3776 -1.9302 11 6 6.4518 3.8549 -3.1502 12 6 7.5803 4.0806 -4.1912 13 7 8.7256 4.5856 -3.4097 14 6 9.7571 5.3405 -3.9013 15 1 10.5520 5.6616 -3.2444 16 6 9.7810 5.6928 -5.2437 17 7 8.8120 5.3018 -6.0440 18 14 11.1876 6.7231 -5.9140 19 1 12.2754 5.8288 -6.3853 20 1 10.6999 7.5491 -7.0475 21 1 11.7060 7.6104 -4.8420 22 6 8.5751 4.1419 -2.0122 23 6 6.5075 3.6550 -0.6193 24 6 4.2343 -0.0506 -0.0044 25 6 3.4741 -1.2038 0.0005 26 7 2.1570 -1.1465 -0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6492 2.1378 -0.0004 31 1 5.7456 0.6126 -1.4734 32 1 6.8936 0.8206 -0.1228 33 1 8.4633 1.6097 -1.5995 34 1 7.2908 1.4611 -2.9435 35 1 5.7571 3.0853 -3.4869 36 1 5.9273 4.7855 -2.9337 37 1 7.2711 4.8194 -4.9307 38 1 7.8399 3.1418 -4.6804 39 1 8.8286 5.5484 -6.9820 40 1 8.5475 5.0056 -1.3479 41 1 9.4021 3.4872 -1.7373 42 1 7.2050 3.7151 0.2161 43 1 5.9215 4.5709 -0.6965 44 1 5.3130 -0.1050 -0.0086 45 1 3.9654 -2.1656 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041747845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:52 Heat of formation + Delta-G solvation = 24.205247 kcal Electronic energy + Delta-G solvation = -26284.944509 eV Core-core repulsion = 22688.678637 eV Total energy + Delta-G solvation = -3596.265872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99922 -40.91374 -39.58240 -37.33288 -34.83634 -33.95189 -33.40870 -31.94402 -30.75825 -30.15979 -28.59816 -27.60981 -26.18127 -24.41997 -24.36122 -23.21677 -22.18902 -20.82188 -20.18930 -18.88366 -18.39335 -17.43931 -17.20485 -16.94038 -16.78479 -16.56838 -15.86694 -15.68213 -15.53367 -15.46169 -15.04728 -14.48834 -14.41900 -14.20969 -14.09363 -13.70306 -13.58325 -13.32379 -13.11922 -13.04731 -12.98939 -12.78588 -12.64267 -12.49909 -12.35829 -12.02732 -11.79954 -11.63473 -11.48487 -11.42812 -11.17173 -10.95727 -10.73323 -10.48587 -9.98310 -9.80889 -8.87474 -7.76936 -5.20524 -0.33197 0.05149 1.47004 1.48567 1.57069 1.59042 1.77540 2.50117 2.74582 3.14976 3.32017 3.34574 3.48291 3.61068 3.67129 3.74593 3.80061 3.93207 4.02059 4.20153 4.27322 4.29575 4.42401 4.50537 4.55188 4.62476 4.66818 4.71084 4.71752 4.77718 4.84892 4.88338 4.94632 4.97919 5.03500 5.05034 5.16897 5.18333 5.28025 5.37095 5.48348 5.62086 5.62579 5.81864 6.30333 6.34910 6.87357 6.90481 7.11130 7.78891 8.42994 9.25206 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029604 B = 0.002718 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.581381 B =10299.817452 C =10338.642901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.118 3.882 3 C -0.133 4.133 4 C -0.092 4.092 5 C 0.571 3.429 6 O -0.577 6.577 7 N -0.607 5.607 8 C 0.093 3.907 9 C -0.112 4.112 10 C -0.073 4.073 11 C -0.114 4.114 12 C 0.162 3.838 13 N -0.626 5.626 14 C -0.235 4.235 15 H 0.083 0.917 16 C -0.069 4.069 17 N -0.950 5.950 18 Si 0.979 3.021 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.270 1.270 22 C 0.148 3.852 23 C 0.128 3.872 24 C -0.155 4.155 25 C 0.103 3.897 26 N -0.490 5.490 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.064 0.936 38 H -0.006 1.006 39 H 0.246 0.754 40 H 0.026 0.974 41 H 0.041 0.959 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.178 0.822 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 -15.515 13.665 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.019 4.019 3 C -0.154 4.154 4 C -0.103 4.103 5 C 0.361 3.639 6 O -0.458 6.458 7 N -0.338 5.338 8 C -0.029 4.029 9 C -0.150 4.150 10 C -0.075 4.075 11 C -0.153 4.153 12 C 0.036 3.964 13 N -0.352 5.352 14 C -0.364 4.364 15 H 0.101 0.899 16 C -0.262 4.262 17 N -0.600 5.600 18 Si 0.807 3.193 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.195 1.195 22 C 0.023 3.977 23 C 0.006 3.994 24 C -0.175 4.175 25 C -0.054 4.054 26 N -0.201 5.201 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.157 0.843 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.012 0.988 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.195 0.805 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.545 -15.648 13.762 23.823 hybrid contribution 1.260 1.849 -0.881 2.405 sum -10.285 -13.799 12.880 21.496 Atomic orbital electron populations 1.20814 0.86516 1.04524 1.04180 1.21661 0.98609 0.87257 0.94395 1.22167 0.93242 1.00501 0.99451 1.20259 0.94518 0.93422 1.02051 1.18188 0.80033 0.88246 0.77411 1.90763 1.69946 1.36031 1.49066 1.48848 1.12201 1.11526 1.61242 1.22901 0.93317 0.88202 0.98443 1.22395 1.00144 0.92214 1.00240 1.21428 0.94980 0.96842 0.94202 1.22648 0.97040 0.99710 0.95859 1.21674 0.85420 0.96246 0.93013 1.44892 1.24504 1.60667 1.05145 1.19466 0.99968 1.23785 0.93165 0.89924 1.25620 1.01175 1.02751 0.96606 1.70068 1.34145 1.51497 1.04338 0.85068 0.78393 0.78171 0.77647 1.21242 1.22307 1.19455 1.21246 0.94473 0.95835 0.86170 1.22290 0.91756 0.88553 0.96841 1.23153 1.03948 0.91370 0.98984 1.23362 0.88674 0.99731 0.93625 1.67484 1.11438 1.29544 1.11631 0.89267 0.89710 0.89350 0.84258 0.88351 0.87183 0.88529 0.90642 0.90908 0.93400 0.91821 0.98814 0.94476 0.95549 0.94107 0.88726 0.91693 0.80532 0.78594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.17 71.24 0.72 -0.61 16 2 C 0.12 2.24 6.78 42.55 0.29 2.53 16 3 C -0.13 -2.91 9.32 22.63 0.21 -2.70 16 4 C -0.09 -2.06 5.79 -19.88 -0.12 -2.17 16 5 C 0.57 16.01 7.75 86.88 0.67 16.69 16 6 O -0.58 -20.82 16.95 -3.75 -0.06 -20.88 16 7 N -0.61 -14.82 3.32 -812.93 -2.70 -17.52 16 8 C 0.09 1.56 5.12 86.62 0.44 2.00 16 9 C -0.11 -2.56 6.04 31.08 0.19 -2.38 16 10 C -0.07 -2.25 0.68 -51.86 -0.04 -2.29 16 11 C -0.11 -4.28 5.95 31.56 0.19 -4.09 16 12 C 0.16 7.86 5.84 86.92 0.51 8.37 16 13 N -0.63 -31.40 3.41 -693.07 -2.36 -33.76 16 14 C -0.23 -12.96 10.28 84.03 0.86 -12.09 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 17 N -0.95 -56.67 10.09 21.65 0.22 -56.45 16 18 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.15 5.64 6.51 86.14 0.56 6.20 16 23 C 0.13 3.54 5.90 86.10 0.51 4.05 16 24 C -0.15 -2.41 8.15 22.63 0.18 -2.22 16 25 C 0.10 1.50 11.17 84.66 0.95 2.44 16 26 N -0.49 -9.37 10.25 -184.04 -1.89 -11.26 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 0.92 8.08 -2.39 -0.02 0.91 16 30 H 0.14 3.08 7.92 -2.91 -0.02 3.06 16 31 H 0.10 1.38 5.96 -2.39 -0.01 1.37 16 32 H 0.11 1.14 7.48 -2.39 -0.02 1.12 16 33 H 0.10 1.97 7.47 -2.39 -0.02 1.95 16 34 H 0.07 1.87 7.79 -2.39 -0.02 1.86 16 35 H 0.07 2.48 7.93 -2.39 -0.02 2.46 16 36 H 0.05 1.91 7.84 -2.39 -0.02 1.89 16 37 H 0.06 3.63 5.89 -2.38 -0.01 3.62 16 38 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.03 1.01 7.87 -2.39 -0.02 0.99 16 41 H 0.04 1.46 7.43 -2.39 -0.02 1.44 16 42 H 0.09 2.27 8.09 -2.39 -0.02 2.25 16 43 H 0.06 2.11 7.60 -2.38 -0.02 2.09 16 44 H 0.18 1.76 4.49 -2.91 -0.01 1.74 16 45 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -74.06 356.29 2.83 -71.23 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.00 Total: 10.86 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.60 Total: 10.30 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -6.73 Total: -118.99 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.88 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.06 2.83 -71.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041747845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.433 kcal (2) G-P(sol) polarization free energy of solvation -74.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds