Wall clock time and date at job start Tue Mar 31 2020 10:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38603 * 119.54767 * 2 1 4 4 C 1.38584 * 119.35166 * 180.27640 * 3 2 1 5 5 C 1.38630 * 118.48651 * 359.48666 * 4 3 2 6 6 C 1.39267 * 119.06142 * 0.53400 * 5 4 3 7 7 C 1.48166 * 119.72703 * 179.72858 * 6 5 4 8 8 O 1.21520 * 119.99667 * 339.14296 * 7 6 5 9 9 N 1.34776 * 120.00806 * 159.13920 * 7 6 5 10 10 C 1.46602 * 119.75022 * 1.40646 * 9 7 6 11 11 C 1.53496 * 110.93052 * 227.68259 * 10 9 7 12 12 C 1.51974 * 107.37215 * 308.44116 * 11 10 9 13 13 H 1.08997 * 111.57722 * 303.00067 * 12 11 10 14 14 C 1.53703 * 114.99833 * 175.28827 * 12 11 10 15 15 C 1.55298 * 101.81548 * 206.55574 * 14 12 11 16 16 N 1.48153 * 107.04703 * 22.44090 * 15 14 12 17 17 C 1.36936 * 126.40244 * 185.02093 * 16 15 14 18 18 H 1.08001 * 119.99923 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99750 * 359.97438 * 17 16 15 20 20 N 1.31615 * 119.99959 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00130 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46836 * 60.00165 * 21 19 17 23 23 H 1.48493 * 109.47310 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47042 * 300.00437 * 21 19 17 25 25 C 1.45506 * 107.20102 * 5.00885 * 16 15 14 26 26 H 1.08991 * 109.57077 * 85.83886 * 25 16 15 27 27 C 1.47798 * 119.76074 * 181.68058 * 9 7 6 28 28 N 1.31491 * 119.55088 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47089 * 89.99804 * 1 2 3 30 30 H 1.09008 * 109.46696 * 210.00118 * 1 2 3 31 31 H 1.09000 * 109.47003 * 329.99528 * 1 2 3 32 32 H 1.08005 * 120.32626 * 0.02562 * 3 2 1 33 33 H 1.07993 * 120.75829 * 179.73045 * 4 3 2 34 34 H 1.08001 * 120.47358 * 180.28915 * 5 4 3 35 35 H 1.08997 * 109.22739 * 348.08326 * 10 9 7 36 36 H 1.09000 * 109.22968 * 107.44647 * 10 9 7 37 37 H 1.09000 * 109.96627 * 188.90606 * 11 10 9 38 38 H 1.09001 * 109.80180 * 67.89063 * 11 10 9 39 39 H 1.08998 * 110.96067 * 88.42324 * 14 12 11 40 40 H 1.09001 * 110.99119 * 324.70098 * 14 12 11 41 41 H 1.09003 * 109.92069 * 263.09511 * 15 14 12 42 42 H 1.08999 * 110.08869 * 141.88693 * 15 14 12 43 43 H 0.97006 * 120.00071 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.06133 * 247.93494 * 27 9 7 45 45 H 1.08998 * 110.06475 * 9.50125 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2010 -0.0058 5 6 4.2334 -0.0196 -0.0006 6 6 3.4822 -1.1923 -0.0010 7 6 4.1692 -2.5050 -0.0015 8 8 5.3223 -2.5871 -0.3763 9 7 3.5155 -3.6081 0.4136 10 6 2.1151 -3.5083 0.8354 11 6 1.8922 -4.2295 2.1719 12 6 2.4619 -5.6314 2.0316 13 1 2.0069 -6.1675 1.1988 14 6 2.4329 -6.4758 3.3156 15 6 3.6171 -7.4526 3.0806 16 7 4.5186 -6.8129 2.0942 17 6 5.6351 -7.3716 1.5317 18 1 6.2200 -6.8089 0.8191 19 6 6.0152 -8.6611 1.8773 20 7 5.3021 -9.3469 2.7453 21 14 7.5378 -9.4236 1.1095 22 1 8.7263 -8.5979 1.4424 23 1 7.7247 -10.7977 1.6404 24 1 7.3725 -9.4814 -0.3651 25 6 3.9958 -5.4800 1.8345 26 1 4.3802 -4.7852 2.5811 27 6 4.2176 -4.9083 0.4461 28 7 2.1555 -1.1439 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6485 2.1399 0.0004 33 1 4.1318 2.1272 -0.0103 34 1 5.3126 -0.0608 -0.0002 35 1 1.8477 -2.4575 0.9465 36 1 1.4782 -3.9617 0.0759 37 1 0.8261 -4.2828 2.3928 38 1 2.4097 -3.6968 2.9698 39 1 1.4917 -7.0183 3.4042 40 1 2.6075 -5.8557 4.1948 41 1 3.2458 -8.3982 2.6856 42 1 4.1514 -7.6248 4.0149 43 1 5.5675 -10.2482 2.9866 44 1 3.7993 -5.5780 -0.3054 45 1 5.2829 -4.7626 0.2674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041935731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:42 Heat of formation + Delta-G solvation = 28.911302 kcal Electronic energy + Delta-G solvation = -26886.243997 eV Core-core repulsion = 23290.182195 eV Total energy + Delta-G solvation = -3596.061802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08402 -40.77493 -39.53633 -36.95988 -34.74972 -33.98581 -33.65694 -32.87359 -30.92789 -30.13938 -28.64069 -26.60392 -26.34349 -24.42728 -23.66768 -23.05934 -21.82572 -21.49847 -20.57091 -18.82107 -18.33973 -17.64597 -17.05942 -16.96153 -16.83627 -16.28143 -16.01669 -15.72768 -15.47607 -15.17341 -14.96467 -14.77391 -14.40331 -14.16744 -13.96469 -13.82737 -13.43560 -13.26559 -13.14609 -13.05398 -13.01296 -12.87588 -12.71775 -12.50567 -12.14671 -12.03093 -11.79594 -11.57693 -11.53736 -11.38062 -11.06052 -10.87311 -10.74732 -10.04846 -9.96501 -9.68566 -8.94181 -7.88515 -5.24029 -0.35836 0.20923 1.41749 1.45019 1.51317 1.60242 1.79576 2.47346 2.71513 2.96106 3.29177 3.47904 3.55906 3.80796 3.87352 3.94067 4.01345 4.01850 4.09716 4.24204 4.26151 4.33714 4.45485 4.54350 4.60712 4.61600 4.76460 4.81847 4.83466 4.91628 4.93120 5.06549 5.11628 5.13184 5.13954 5.15399 5.24577 5.29333 5.39902 5.47246 5.58190 5.63690 5.75318 5.77523 6.16325 6.29188 6.69515 7.00184 7.05413 7.73184 8.40677 9.22276 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.003597 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.667112 B = 7781.577017 C = 8816.903669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.111 3.889 3 C -0.135 4.135 4 C -0.069 4.069 5 C -0.132 4.132 6 C 0.065 3.935 7 C 0.554 3.446 8 O -0.583 6.583 9 N -0.583 5.583 10 C 0.077 3.923 11 C -0.110 4.110 12 C -0.097 4.097 13 H 0.073 0.927 14 C -0.121 4.121 15 C 0.181 3.819 16 N -0.613 5.613 17 C -0.242 4.242 18 H 0.074 0.926 19 C -0.061 4.061 20 N -0.948 5.948 21 Si 0.974 3.026 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.150 3.850 26 H 0.006 0.994 27 C 0.126 3.874 28 N -0.465 5.465 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.182 0.818 33 H 0.177 0.823 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.001 0.999 43 H 0.248 0.752 44 H 0.066 0.934 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.154 24.905 -3.639 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.028 4.028 3 C -0.155 4.155 4 C -0.094 4.094 5 C -0.153 4.153 6 C -0.071 4.071 7 C 0.342 3.658 8 O -0.463 6.463 9 N -0.313 5.313 10 C -0.044 4.044 11 C -0.148 4.148 12 C -0.117 4.117 13 H 0.092 0.908 14 C -0.159 4.159 15 C 0.057 3.943 16 N -0.338 5.338 17 C -0.371 4.371 18 H 0.092 0.908 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.802 3.198 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.203 1.203 25 C 0.042 3.958 26 H 0.023 0.977 27 C 0.002 3.998 28 N -0.179 5.179 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.199 0.801 33 H 0.194 0.806 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.019 0.981 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.882 23.829 -3.823 28.353 hybrid contribution 2.132 -0.724 -0.251 2.266 sum -12.750 23.106 -4.074 26.702 Atomic orbital electron populations 1.20882 0.85666 1.05137 1.04356 1.22183 0.98952 0.87964 0.93749 1.22664 0.94682 1.00458 0.97673 1.22026 0.95203 0.97970 0.94243 1.22174 1.02030 0.92528 0.98573 1.20711 0.90649 0.92753 1.02975 1.18645 0.85260 0.84390 0.77504 1.90744 1.18763 1.86318 1.50472 1.48251 1.14178 1.06620 1.62289 1.23052 0.78629 1.07015 0.95677 1.21771 1.02843 0.92971 0.97211 1.22227 0.94546 0.96697 0.98210 0.90815 1.22608 0.98412 0.97736 0.97185 1.21367 0.88674 0.93800 0.90487 1.44447 1.27970 1.12184 1.49229 1.19288 1.01274 0.97119 1.19418 0.90808 1.25576 1.02149 0.97419 1.00239 1.70144 1.41088 1.11261 1.37136 0.85224 0.79276 0.77216 0.78092 1.20739 1.21423 1.20312 1.21072 0.94522 0.86862 0.93320 0.97669 1.21383 0.97006 0.83371 0.97995 1.67308 1.07432 1.30236 1.12879 0.89223 0.90360 0.87691 0.80055 0.80561 0.84592 0.82846 0.91215 0.87071 0.92209 0.89388 0.91224 0.95785 0.98052 0.94252 0.91610 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.17 71.24 0.72 0.00 16 2 C 0.11 1.57 6.78 42.70 0.29 1.86 16 3 C -0.14 -1.32 9.75 22.44 0.22 -1.10 16 4 C -0.07 -0.88 10.17 22.45 0.23 -0.65 16 5 C -0.13 -2.91 9.63 22.61 0.22 -2.69 16 6 C 0.06 1.77 6.45 41.89 0.27 2.04 16 7 C 0.55 20.24 7.60 86.88 0.66 20.90 16 8 O -0.58 -25.61 15.89 -3.78 -0.06 -25.67 16 9 N -0.58 -20.76 3.01 -822.61 -2.48 -23.24 16 10 C 0.08 2.09 5.77 86.53 0.50 2.59 16 11 C -0.11 -2.88 5.70 30.42 0.17 -2.71 16 12 C -0.10 -3.42 2.62 -10.07 -0.03 -3.45 16 13 H 0.07 2.67 8.13 -2.39 -0.02 2.65 16 14 C -0.12 -4.49 6.54 31.62 0.21 -4.28 16 15 C 0.18 9.29 5.45 86.85 0.47 9.77 16 16 N -0.61 -33.45 3.35 -669.32 -2.24 -35.69 16 17 C -0.24 -14.43 9.88 84.03 0.83 -13.60 16 18 H 0.07 4.35 7.41 -2.91 -0.02 4.32 16 19 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 20 N -0.95 -58.82 10.43 21.65 0.23 -58.59 16 21 Si 0.97 48.30 29.55 68.60 2.03 50.32 16 22 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 25 C 0.15 6.74 2.77 45.60 0.13 6.86 16 26 H 0.01 0.28 7.90 -2.39 -0.02 0.26 16 27 C 0.13 5.41 5.68 85.73 0.49 5.90 16 28 N -0.46 -10.24 6.18 -173.08 -1.07 -11.31 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.10 0.16 8.08 -2.39 -0.02 0.14 16 32 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 33 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.14 3.19 7.79 -2.91 -0.02 3.17 16 35 H 0.16 3.69 3.98 -63.44 -0.25 3.44 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 1.64 7.97 -2.39 -0.02 1.62 16 39 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.07 2.39 8.12 -2.39 -0.02 2.37 16 41 H 0.02 1.36 7.21 -2.39 -0.02 1.34 16 42 H 0.00 0.07 7.76 -2.39 -0.02 0.05 16 43 H 0.25 14.95 8.31 -92.70 -0.77 14.17 16 44 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.06 2.91 6.77 -2.39 -0.02 2.89 16 Total: -1.00 -79.65 354.57 2.99 -76.66 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.74 Total: 9.24 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 5.85 Total: 18.29 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -5.56 Total: -128.83 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.32 kcal Total: -79.65 2.99 -76.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041935731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.569 kcal (2) G-P(sol) polarization free energy of solvation -79.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds